Wall clock time and date at job start Mon Mar 30 2020 02:22:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 109.47297 * 2 1 4 4 C 1.50699 * 109.47492 * 239.99474 * 2 1 3 5 5 H 1.07996 * 120.00495 * 245.87938 * 4 2 1 6 6 C 1.37878 * 119.99649 * 65.87295 * 4 2 1 7 7 N 1.31513 * 119.99672 * 186.71771 * 6 4 2 8 8 Si 1.86798 * 120.00193 * 6.71737 * 6 4 2 9 9 H 1.48496 * 109.47518 * 270.00016 * 8 6 4 10 10 H 1.48500 * 109.46908 * 29.99812 * 8 6 4 11 11 H 1.48496 * 109.47121 * 149.99557 * 8 6 4 12 12 N 1.46905 * 109.46979 * 119.99976 * 2 1 3 13 13 C 1.46902 * 110.99579 * 272.08189 * 12 2 1 14 14 C 1.53000 * 115.55117 * 294.85827 * 13 12 2 15 15 C 1.53004 * 117.50311 * 80.53251 * 13 12 2 16 16 C 1.53001 * 117.50058 * 149.19578 * 13 12 2 17 17 H 1.08997 * 117.50612 * 145.01551 * 16 13 12 18 18 C 1.53004 * 117.49758 * 0.02562 * 16 13 12 19 19 H 1.09005 * 109.47470 * 185.27016 * 1 2 3 20 20 H 1.08994 * 109.47174 * 305.26947 * 1 2 3 21 21 H 1.09002 * 109.46943 * 65.26845 * 1 2 3 22 22 H 0.97001 * 120.00423 * 354.95597 * 7 6 4 23 23 H 1.00900 * 111.00295 * 148.12542 * 12 2 1 24 24 H 1.09004 * 109.46908 * 56.09606 * 14 13 12 25 25 H 1.08999 * 109.47320 * 176.09542 * 14 13 12 26 26 H 1.09001 * 109.47255 * 296.10122 * 14 13 12 27 27 H 1.08997 * 117.50142 * 214.97803 * 15 13 12 28 28 H 1.09000 * 117.49345 * 0.02562 * 15 13 12 29 29 H 1.09006 * 109.46799 * 60.00160 * 18 16 13 30 30 H 1.08999 * 109.47097 * 180.02562 * 18 16 13 31 31 H 1.08998 * 109.47473 * 300.00983 * 18 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.5728 -1.6406 -1.1341 6 6 1.8020 -0.1731 -2.4790 7 7 2.1221 -0.8546 -3.5574 8 14 1.0354 1.5227 -2.6392 9 1 -0.4430 1.3945 -2.6950 10 1 1.4164 2.3509 -1.4669 11 1 1.5233 2.1711 -3.8828 12 7 2.0196 -0.6925 1.1995 13 6 2.1481 0.2380 2.3289 14 6 3.1982 1.3381 2.1615 15 6 0.8764 0.5875 3.1046 16 6 1.9321 -0.3240 3.7355 17 1 2.5377 0.0901 4.5415 18 6 1.5994 -1.8124 3.8581 19 1 -0.3634 -1.0233 0.0944 20 1 -0.3633 0.5934 0.8390 21 1 -0.3633 0.4300 -0.9334 22 1 2.5864 -1.7023 -3.4754 23 1 2.8943 -1.1605 1.0152 24 1 2.9919 1.9018 1.2516 25 1 3.1623 2.0084 3.0202 26 1 4.1885 0.8878 2.0931 27 1 0.7880 1.6010 3.4959 28 1 -0.0555 0.1266 2.7771 29 1 2.4118 -2.4024 3.4337 30 1 1.4727 -2.0710 4.9093 31 1 0.6764 -2.0241 3.3183 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575579309.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:22:30 Heat of formation + Delta-G solvation = -8.538259 kcal Electronic energy + Delta-G solvation = -11582.341523 eV Core-core repulsion = 9670.159499 eV Total energy + Delta-G solvation = -1912.182023 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 183.132 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.79320 -36.36762 -33.89481 -31.04513 -29.58300 -27.85463 -26.66263 -22.40255 -21.60782 -20.04593 -19.46447 -16.52808 -16.42682 -15.91143 -15.19769 -14.67913 -14.34108 -14.07614 -13.78455 -13.55646 -13.14853 -12.99488 -12.88236 -12.67855 -12.27073 -12.11620 -11.88041 -11.66350 -10.91374 -10.82284 -10.58332 -10.26293 -9.18510 -8.71943 -6.41386 1.40577 1.49728 1.67077 2.44216 2.87560 3.06952 3.38803 3.86174 4.05131 4.26491 4.54592 4.56155 4.63297 4.80697 4.82661 4.86582 4.94152 4.99736 5.05317 5.09415 5.15253 5.28180 5.33409 5.60694 5.64182 5.79218 5.98630 6.28577 6.71647 6.80067 7.38463 8.63477 Molecular weight = 183.13amu Principal moments of inertia in cm(-1) A = 0.054406 B = 0.012596 C = 0.011991 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 514.521177 B = 2222.334671 C = 2334.595574 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.189 3.811 3 H 0.005 0.995 4 C -0.597 4.597 5 H 0.022 0.978 6 C -0.024 4.024 7 N -0.946 5.946 8 Si 1.093 2.907 9 H -0.263 1.263 10 H -0.255 1.255 11 H -0.291 1.291 12 N -0.647 5.647 13 C 0.010 3.990 14 C -0.136 4.136 15 C -0.160 4.160 16 C -0.126 4.126 17 H 0.120 0.880 18 C -0.105 4.105 19 H 0.039 0.961 20 H 0.055 0.945 21 H 0.035 0.965 22 H 0.251 0.749 23 H 0.330 0.670 24 H 0.041 0.959 25 H 0.082 0.918 26 H 0.054 0.946 27 H 0.108 0.892 28 H 0.087 0.913 29 H 0.046 0.954 30 H 0.071 0.929 31 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.500 5.221 14.436 15.424 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.079 3.921 3 H 0.023 0.977 4 C -0.636 4.636 5 H 0.040 0.960 6 C -0.221 4.221 7 N -0.582 5.582 8 Si 0.916 3.084 9 H -0.189 1.189 10 H -0.179 1.179 11 H -0.217 1.217 12 N -0.276 5.276 13 C -0.082 4.082 14 C -0.195 4.195 15 C -0.198 4.198 16 C -0.144 4.144 17 H 0.138 0.862 18 C -0.163 4.163 19 H 0.058 0.942 20 H 0.073 0.927 21 H 0.054 0.946 22 H 0.060 0.940 23 H 0.148 0.852 24 H 0.060 0.940 25 H 0.101 0.899 26 H 0.073 0.927 27 H 0.126 0.874 28 H 0.105 0.895 29 H 0.066 0.934 30 H 0.090 0.910 31 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -2.687 6.066 13.525 15.065 hybrid contribution 1.620 -1.269 0.155 2.064 sum -1.068 4.797 13.681 14.537 Atomic orbital electron populations 1.21976 0.97471 1.00315 0.99108 1.19372 0.92654 0.92745 0.87308 0.97713 1.22480 1.38914 1.08467 0.93713 0.95955 1.27160 0.96368 1.06839 0.91777 1.70936 1.40106 1.15734 1.31472 0.83392 0.76965 0.71730 0.76361 1.18852 1.17942 1.21744 1.60342 1.33370 1.28622 1.05305 1.21778 0.99037 0.96491 0.90893 1.21727 0.97873 0.97941 1.01979 1.23287 0.93204 1.00669 1.02607 1.22587 1.01931 0.95868 0.94035 0.86175 1.21108 1.00878 0.93138 1.01134 0.94166 0.92657 0.94607 0.93968 0.85224 0.94007 0.89916 0.92726 0.87419 0.89484 0.93446 0.91009 0.93825 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.76 8.83 71.98 0.64 -5.13 16 2 C 0.19 8.97 2.10 44.17 0.09 9.06 16 3 H 0.01 0.26 4.57 -2.39 -0.01 0.25 16 4 C -0.60 -34.49 8.90 25.60 0.23 -34.26 16 5 H 0.02 1.41 7.86 -2.91 -0.02 1.39 16 6 C -0.02 -1.43 5.42 84.66 0.46 -0.97 16 7 N -0.95 -60.43 13.70 21.45 0.29 -60.14 16 8 Si 1.09 51.53 25.42 68.60 1.74 53.27 16 9 H -0.26 -11.52 6.76 99.48 0.67 -10.85 16 10 H -0.25 -10.89 6.35 99.48 0.63 -10.26 16 11 H -0.29 -13.65 7.11 99.48 0.71 -12.94 16 12 N -0.65 -26.86 5.80 -452.08 -2.62 -29.48 16 13 C 0.01 0.34 2.23 3.53 0.01 0.34 16 14 C -0.14 -4.14 9.68 71.98 0.70 -3.44 16 15 C -0.16 -4.53 8.83 30.62 0.27 -4.26 16 16 C -0.13 -3.32 6.13 -10.77 -0.07 -3.38 16 17 H 0.12 2.58 8.14 -2.39 -0.02 2.56 16 18 C -0.11 -2.78 9.64 71.98 0.69 -2.09 16 19 H 0.04 1.81 8.14 -2.38 -0.02 1.79 16 20 H 0.05 2.08 6.21 -2.39 -0.01 2.07 16 21 H 0.04 1.59 4.56 -2.39 -0.01 1.58 16 22 H 0.25 16.30 8.72 -92.71 -0.81 15.49 16 23 H 0.33 14.43 8.27 -89.69 -0.74 13.69 16 24 H 0.04 1.44 6.59 -2.38 -0.02 1.42 16 25 H 0.08 1.97 8.10 -2.39 -0.02 1.96 16 26 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 27 H 0.11 2.54 8.14 -2.39 -0.02 2.52 16 28 H 0.09 2.68 6.94 -2.39 -0.02 2.66 16 29 H 0.05 1.33 8.14 -2.38 -0.02 1.31 16 30 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 31 H 0.04 1.30 7.90 -2.39 -0.02 1.28 16 Total: -1.00 -64.12 245.47 2.65 -61.47 By element: Atomic # 1 Polarization: 18.78 SS G_CDS: 0.21 Total: 19.00 kcal Atomic # 6 Polarization: -47.14 SS G_CDS: 3.02 Total: -44.13 kcal Atomic # 7 Polarization: -87.29 SS G_CDS: -2.33 Total: -89.62 kcal Atomic # 14 Polarization: 51.53 SS G_CDS: 1.74 Total: 53.27 kcal Total: -64.12 2.65 -61.47 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575579309.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.935 kcal (2) G-P(sol) polarization free energy of solvation -64.122 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.188 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.649 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.473 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.538 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds