Wall clock time and date at job start Mon Mar 30 2020 01:50:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53003 * 109.46930 * 2 1 4 4 C 1.53002 * 109.46810 * 299.99987 * 3 2 1 5 5 N 1.46498 * 109.46719 * 180.02562 * 3 2 1 6 6 C 1.36936 * 119.99671 * 300.53328 * 5 3 2 7 7 H 1.08000 * 120.00258 * 353.84830 * 6 5 3 8 8 C 1.38816 * 119.99591 * 173.84007 * 6 5 3 9 9 N 1.31614 * 120.00382 * 0.02562 * 8 6 5 10 10 Si 1.86800 * 119.99645 * 180.02562 * 8 6 5 11 11 H 1.48497 * 109.47342 * 0.02562 * 10 8 6 12 12 H 1.48501 * 109.47224 * 120.00473 * 10 8 6 13 13 H 1.48506 * 109.47295 * 239.99898 * 10 8 6 14 14 C 1.52996 * 109.47221 * 59.99734 * 3 2 1 15 15 C 1.52993 * 117.50184 * 251.72527 * 14 3 2 16 16 C 1.52997 * 60.00214 * 252.51306 * 15 14 3 17 17 H 1.09001 * 109.47097 * 59.99909 * 1 2 3 18 18 H 1.09003 * 109.47092 * 180.02562 * 1 2 3 19 19 H 1.08995 * 109.47184 * 300.00154 * 1 2 3 20 20 H 1.09002 * 109.46566 * 240.00014 * 2 1 3 21 21 H 1.08996 * 109.46971 * 119.99626 * 2 1 3 22 22 H 1.09003 * 109.47458 * 299.99990 * 4 3 2 23 23 H 1.08991 * 109.47358 * 60.00422 * 4 3 2 24 24 H 1.09003 * 109.47030 * 180.02562 * 4 3 2 25 25 H 0.97001 * 119.99746 * 120.81715 * 5 3 2 26 26 H 0.96997 * 120.00168 * 179.97438 * 9 8 6 27 27 H 1.09000 * 115.54557 * 37.44202 * 14 3 2 28 28 H 1.08997 * 117.49673 * 0.02562 * 15 14 3 29 29 H 1.09004 * 117.50005 * 145.02216 * 15 14 3 30 30 H 1.09001 * 117.49877 * 252.50537 * 16 15 14 31 31 H 1.08996 * 117.49603 * 107.48888 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.5299 2.1637 -1.2493 5 7 3.5050 1.4425 -0.0006 6 6 4.1900 0.8398 1.0205 7 1 3.6550 0.4522 1.8749 8 6 5.5721 0.7269 0.9573 9 7 6.2242 1.1995 -0.0837 10 14 6.5065 -0.0959 2.3499 11 1 5.5489 -0.5390 3.3948 12 1 7.2439 -1.2727 1.8239 13 1 7.4698 0.8694 2.9380 14 6 1.5299 2.1638 1.2492 15 6 0.4429 3.2234 1.0588 16 6 1.8733 3.6473 1.3980 17 1 -0.3633 0.5139 -0.8900 18 1 -0.3633 -1.0277 0.0005 19 1 -0.3633 0.5138 0.8899 20 1 1.8933 -0.5139 -0.8900 21 1 1.8933 -0.5138 0.8900 22 1 1.8933 1.6499 -2.1393 23 1 0.4400 2.1637 -1.2493 24 1 1.8936 3.1913 -1.2495 25 1 3.9897 1.8730 -0.7222 26 1 7.1900 1.1209 -0.1276 27 1 1.4933 1.5621 2.1573 28 1 0.0908 3.4064 0.0436 29 1 -0.3095 3.3190 1.8418 30 1 2.0620 4.0218 2.4041 31 1 2.4624 4.1095 0.6059 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000691516350.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:50:17 Heat of formation + Delta-G solvation = 26.179144 kcal Electronic energy + Delta-G solvation = -11703.982600 eV Core-core repulsion = 9793.306036 eV Total energy + Delta-G solvation = -1910.676564 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 183.132 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -38.48946 -34.14853 -32.55559 -30.08860 -27.96536 -24.41177 -23.10626 -21.67266 -21.57375 -17.77130 -16.86835 -15.40303 -14.85642 -14.27447 -13.80966 -13.26469 -12.83686 -12.33455 -11.76876 -11.59582 -11.27627 -10.88530 -10.82232 -10.77768 -10.61836 -10.35149 -10.18774 -9.81635 -9.58699 -9.42169 -9.14072 -8.76164 -6.85866 -5.68825 -2.96286 3.46817 3.52743 3.54613 4.50095 4.69564 5.33101 5.47596 5.57981 5.69617 5.78179 5.79098 5.90722 5.94254 6.04219 6.08660 6.21049 6.43981 6.46929 6.49868 6.67730 6.70168 6.74279 6.85299 6.93857 7.11500 7.27739 7.81097 8.50840 9.61349 10.20116 10.55891 11.54334 Molecular weight = 183.13amu Principal moments of inertia in cm(-1) A = 0.045133 B = 0.013166 C = 0.012509 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 620.245303 B = 2126.203902 C = 2237.833108 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.122 4.122 3 C 0.227 3.773 4 C -0.151 4.151 5 N -0.715 5.715 6 C -0.222 4.222 7 H 0.069 0.931 8 C -0.017 4.017 9 N -0.935 5.935 10 Si 0.901 3.099 11 H -0.281 1.281 12 H -0.293 1.293 13 H -0.293 1.293 14 C -0.132 4.132 15 C -0.201 4.201 16 C -0.164 4.164 17 H 0.049 0.951 18 H 0.040 0.960 19 H 0.052 0.948 20 H 0.055 0.945 21 H 0.061 0.939 22 H 0.052 0.948 23 H 0.059 0.941 24 H 0.051 0.949 25 H 0.382 0.618 26 H 0.252 0.748 27 H 0.089 0.911 28 H 0.092 0.908 29 H 0.078 0.922 30 H 0.079 0.921 31 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.621 1.492 0.262 10.728 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.162 4.162 3 C 0.135 3.865 4 C -0.209 4.209 5 N -0.355 5.355 6 C -0.353 4.353 7 H 0.087 0.913 8 C -0.212 4.212 9 N -0.585 5.585 10 Si 0.733 3.267 11 H -0.207 1.207 12 H -0.221 1.221 13 H -0.221 1.221 14 C -0.152 4.152 15 C -0.239 4.239 16 C -0.201 4.201 17 H 0.068 0.932 18 H 0.059 0.941 19 H 0.071 0.929 20 H 0.074 0.926 21 H 0.079 0.921 22 H 0.071 0.929 23 H 0.077 0.923 24 H 0.070 0.930 25 H 0.216 0.784 26 H 0.062 0.938 27 H 0.107 0.893 28 H 0.110 0.890 29 H 0.096 0.904 30 H 0.098 0.902 31 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -10.538 1.385 0.394 10.636 hybrid contribution 0.855 -0.315 0.680 1.137 sum -9.683 1.070 1.075 9.801 Atomic orbital electron populations 1.21852 0.97409 1.00087 1.01313 1.21931 0.93523 0.98725 1.02014 1.19069 0.85247 0.91850 0.90291 1.22129 1.00225 1.00348 0.98185 1.42475 0.98668 1.66606 1.27727 1.19181 0.89237 1.29103 0.97812 0.91312 1.24716 0.96626 1.02108 0.97775 1.69668 1.07101 1.51984 1.29697 0.86197 0.80024 0.78854 0.81656 1.20669 1.22054 1.22085 1.22819 1.00177 0.91120 1.01103 1.23119 0.92163 1.06820 1.01784 1.22646 0.96715 0.99071 1.01658 0.93247 0.94128 0.92909 0.92598 0.92066 0.92901 0.92268 0.92972 0.78363 0.93777 0.89306 0.88968 0.90371 0.90220 0.89176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.23 9.32 37.16 0.35 -1.88 16 2 C -0.12 -2.30 4.94 -26.73 -0.13 -2.44 16 3 C 0.23 4.49 0.74 -131.82 -0.10 4.39 16 4 C -0.15 -2.58 6.86 37.16 0.25 -2.33 16 5 N -0.72 -17.78 5.06 -47.23 -0.24 -18.02 16 6 C -0.22 -6.10 8.73 -15.06 -0.13 -6.23 16 7 H 0.07 1.87 7.32 -52.49 -0.38 1.48 16 8 C -0.02 -0.49 5.50 -17.43 -0.10 -0.59 16 9 N -0.94 -28.49 13.07 55.49 0.73 -27.77 16 10 Si 0.90 22.72 29.55 -169.99 -5.02 17.70 16 11 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 12 H -0.29 -7.46 7.11 56.52 0.40 -7.05 16 13 H -0.29 -7.47 7.11 56.52 0.40 -7.07 16 14 C -0.13 -2.45 3.46 -90.63 -0.31 -2.76 16 15 C -0.20 -3.09 9.47 -26.74 -0.25 -3.34 16 16 C -0.16 -2.92 9.81 -26.73 -0.26 -3.19 16 17 H 0.05 0.68 6.43 -51.93 -0.33 0.35 16 18 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 19 H 0.05 0.77 7.08 -51.93 -0.37 0.40 16 20 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 21 H 0.06 1.26 7.37 -51.93 -0.38 0.87 16 22 H 0.05 0.91 8.14 -51.93 -0.42 0.48 16 23 H 0.06 0.87 5.11 -51.93 -0.27 0.60 16 24 H 0.05 0.89 7.01 -51.93 -0.36 0.52 16 25 H 0.38 10.23 7.69 -40.82 -0.31 9.92 16 26 H 0.25 7.47 8.31 -40.82 -0.34 7.13 16 27 H 0.09 1.73 8.13 -51.93 -0.42 1.31 16 28 H 0.09 1.32 5.87 -51.93 -0.30 1.02 16 29 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 30 H 0.08 1.37 8.14 -51.93 -0.42 0.94 16 31 H 0.09 1.70 7.41 -51.93 -0.38 1.32 16 LS Contribution 246.28 15.07 3.71 3.71 Total: -1.00 -29.25 246.28 -6.28 -35.53 By element: Atomic # 1 Polarization: 11.98 SS G_CDS: -4.77 Total: 7.21 kcal Atomic # 6 Polarization: -17.68 SS G_CDS: -0.68 Total: -18.36 kcal Atomic # 7 Polarization: -46.28 SS G_CDS: 0.49 Total: -45.79 kcal Atomic # 14 Polarization: 22.72 SS G_CDS: -5.02 Total: 17.70 kcal Total LS contribution 3.71 Total: 3.71 kcal Total: -29.25 -6.28 -35.53 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691516350.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.711 kcal (2) G-P(sol) polarization free energy of solvation -29.248 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.462 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.283 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.532 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.179 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds