Wall clock time and date at job start Mon Mar 30 2020 01:50:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53003 * 109.46930 * 2 1 4 4 C 1.53002 * 109.46810 * 299.99987 * 3 2 1 5 5 N 1.46498 * 109.46719 * 180.02562 * 3 2 1 6 6 C 1.36936 * 119.99671 * 300.53328 * 5 3 2 7 7 H 1.08000 * 120.00258 * 353.84830 * 6 5 3 8 8 C 1.38816 * 119.99591 * 173.84007 * 6 5 3 9 9 N 1.31614 * 120.00382 * 0.02562 * 8 6 5 10 10 Si 1.86800 * 119.99645 * 180.02562 * 8 6 5 11 11 H 1.48497 * 109.47342 * 0.02562 * 10 8 6 12 12 H 1.48501 * 109.47224 * 120.00473 * 10 8 6 13 13 H 1.48506 * 109.47295 * 239.99898 * 10 8 6 14 14 C 1.52996 * 109.47221 * 59.99734 * 3 2 1 15 15 C 1.52993 * 117.50184 * 251.72527 * 14 3 2 16 16 C 1.52997 * 60.00214 * 252.51306 * 15 14 3 17 17 H 1.09001 * 109.47097 * 59.99909 * 1 2 3 18 18 H 1.09003 * 109.47092 * 180.02562 * 1 2 3 19 19 H 1.08995 * 109.47184 * 300.00154 * 1 2 3 20 20 H 1.09002 * 109.46566 * 240.00014 * 2 1 3 21 21 H 1.08996 * 109.46971 * 119.99626 * 2 1 3 22 22 H 1.09003 * 109.47458 * 299.99990 * 4 3 2 23 23 H 1.08991 * 109.47358 * 60.00422 * 4 3 2 24 24 H 1.09003 * 109.47030 * 180.02562 * 4 3 2 25 25 H 0.97001 * 119.99746 * 120.81715 * 5 3 2 26 26 H 0.96997 * 120.00168 * 179.97438 * 9 8 6 27 27 H 1.09000 * 115.54557 * 37.44202 * 14 3 2 28 28 H 1.08997 * 117.49673 * 0.02562 * 15 14 3 29 29 H 1.09004 * 117.50005 * 145.02216 * 15 14 3 30 30 H 1.09001 * 117.49877 * 252.50537 * 16 15 14 31 31 H 1.08996 * 117.49603 * 107.48888 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.5299 2.1637 -1.2493 5 7 3.5050 1.4425 -0.0006 6 6 4.1900 0.8398 1.0205 7 1 3.6550 0.4522 1.8749 8 6 5.5721 0.7269 0.9573 9 7 6.2242 1.1995 -0.0837 10 14 6.5065 -0.0959 2.3499 11 1 5.5489 -0.5390 3.3948 12 1 7.2439 -1.2727 1.8239 13 1 7.4698 0.8694 2.9380 14 6 1.5299 2.1638 1.2492 15 6 0.4429 3.2234 1.0588 16 6 1.8733 3.6473 1.3980 17 1 -0.3633 0.5139 -0.8900 18 1 -0.3633 -1.0277 0.0005 19 1 -0.3633 0.5138 0.8899 20 1 1.8933 -0.5139 -0.8900 21 1 1.8933 -0.5138 0.8900 22 1 1.8933 1.6499 -2.1393 23 1 0.4400 2.1637 -1.2493 24 1 1.8936 3.1913 -1.2495 25 1 3.9897 1.8730 -0.7222 26 1 7.1900 1.1209 -0.1276 27 1 1.4933 1.5621 2.1573 28 1 0.0908 3.4064 0.0436 29 1 -0.3095 3.3190 1.8418 30 1 2.0620 4.0218 2.4041 31 1 2.4624 4.1095 0.6059 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000691516350.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:50:17 Heat of formation + Delta-G solvation = 8.361486 kcal Electronic energy + Delta-G solvation = -11704.755232 eV Core-core repulsion = 9793.306036 eV Total energy + Delta-G solvation = -1911.449195 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 183.132 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.99862 -35.83425 -34.33821 -31.90913 -29.54594 -26.08668 -24.96546 -23.08776 -22.91687 -19.49093 -18.79916 -16.99087 -16.50517 -15.78663 -15.63731 -15.14279 -14.23378 -13.90241 -13.32790 -13.00607 -12.85804 -12.82011 -12.51540 -12.26534 -12.12127 -11.99442 -11.88247 -11.59920 -11.19679 -11.00733 -10.70333 -10.63224 -8.90314 -7.88210 -5.13981 1.45577 1.45877 1.55263 2.58502 3.13489 3.45016 3.91266 4.01636 4.20278 4.34135 4.38682 4.46991 4.61974 4.70482 4.80379 4.92334 5.00381 5.08564 5.15197 5.25644 5.33458 5.36178 5.42029 5.47108 5.60329 5.65996 5.78282 6.36442 7.40828 8.20049 8.42856 9.36190 Molecular weight = 183.13amu Principal moments of inertia in cm(-1) A = 0.045133 B = 0.013166 C = 0.012509 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 620.245303 B = 2126.203902 C = 2237.833108 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.119 4.119 3 C 0.216 3.784 4 C -0.145 4.145 5 N -0.727 5.727 6 C -0.207 4.207 7 H 0.069 0.931 8 C -0.082 4.082 9 N -0.973 5.973 10 Si 0.961 3.039 11 H -0.269 1.269 12 H -0.297 1.297 13 H -0.297 1.297 14 C -0.153 4.153 15 C -0.159 4.159 16 C -0.180 4.180 17 H 0.066 0.934 18 H 0.054 0.946 19 H 0.060 0.940 20 H 0.039 0.961 21 H 0.035 0.965 22 H 0.046 0.954 23 H 0.092 0.908 24 H 0.049 0.951 25 H 0.369 0.631 26 H 0.246 0.754 27 H 0.076 0.924 28 H 0.109 0.891 29 H 0.103 0.897 30 H 0.082 0.918 31 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.911 1.655 0.718 13.037 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.159 4.159 3 C 0.127 3.873 4 C -0.202 4.202 5 N -0.366 5.366 6 C -0.340 4.340 7 H 0.087 0.913 8 C -0.274 4.274 9 N -0.626 5.626 10 Si 0.791 3.209 11 H -0.193 1.193 12 H -0.224 1.224 13 H -0.225 1.225 14 C -0.173 4.173 15 C -0.196 4.196 16 C -0.218 4.218 17 H 0.085 0.915 18 H 0.073 0.927 19 H 0.079 0.921 20 H 0.058 0.942 21 H 0.054 0.946 22 H 0.065 0.935 23 H 0.110 0.890 24 H 0.068 0.932 25 H 0.200 0.800 26 H 0.055 0.945 27 H 0.094 0.906 28 H 0.128 0.872 29 H 0.122 0.878 30 H 0.101 0.899 31 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -12.891 1.541 0.870 13.012 hybrid contribution 1.479 -0.349 0.531 1.610 sum -11.412 1.191 1.401 11.560 Atomic orbital electron populations 1.21764 0.93801 1.01545 1.02508 1.21848 0.96663 0.97398 0.99967 1.19411 0.82448 0.93043 0.92415 1.22088 1.02124 0.99620 0.96368 1.42720 1.01057 1.66183 1.26599 1.19436 0.89420 1.27130 0.97998 0.91288 1.25432 0.97748 1.03997 1.00186 1.69815 1.06789 1.54267 1.31705 0.85235 0.78712 0.77529 0.79384 1.19314 1.22437 1.22481 1.22634 1.03455 0.91325 0.99868 1.23196 0.90924 1.01932 1.03540 1.22658 0.99234 0.98383 1.01492 0.91474 0.92715 0.92097 0.94190 0.94611 0.93488 0.88979 0.93191 0.79962 0.94459 0.90567 0.87239 0.87837 0.89937 0.90743 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.69 9.32 71.98 0.67 -3.02 16 2 C -0.12 -4.37 4.94 30.60 0.15 -4.21 16 3 C 0.22 8.34 0.74 3.60 0.00 8.34 16 4 C -0.14 -4.63 6.86 71.98 0.49 -4.14 16 5 N -0.73 -36.59 5.06 -303.34 -1.54 -38.12 16 6 C -0.21 -11.54 8.73 84.03 0.73 -10.81 16 7 H 0.07 3.77 7.32 -2.91 -0.02 3.75 16 8 C -0.08 -4.82 5.50 84.86 0.47 -4.35 16 9 N -0.97 -60.80 13.07 21.65 0.28 -60.52 16 10 Si 0.96 47.47 29.55 68.60 2.03 49.50 16 11 H -0.27 -12.51 7.11 99.48 0.71 -11.81 16 12 H -0.30 -14.71 7.11 99.48 0.71 -14.00 16 13 H -0.30 -14.74 7.11 99.48 0.71 -14.03 16 14 C -0.15 -5.39 3.46 -10.80 -0.04 -5.43 16 15 C -0.16 -4.25 9.47 30.59 0.29 -3.96 16 16 C -0.18 -6.16 9.81 30.59 0.30 -5.86 16 17 H 0.07 1.56 6.43 -2.39 -0.02 1.55 16 18 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 19 H 0.06 1.54 7.08 -2.39 -0.02 1.52 16 20 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 21 H 0.04 1.45 7.37 -2.39 -0.02 1.44 16 22 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 23 H 0.09 2.31 5.11 -2.39 -0.01 2.30 16 24 H 0.05 1.61 7.01 -2.39 -0.02 1.60 16 25 H 0.37 20.22 7.69 -92.71 -0.71 19.50 16 26 H 0.25 15.01 8.31 -92.71 -0.77 14.24 16 27 H 0.08 2.87 8.13 -2.39 -0.02 2.85 16 28 H 0.11 2.59 5.87 -2.39 -0.01 2.57 16 29 H 0.10 2.33 8.14 -2.38 -0.02 2.31 16 30 H 0.08 2.73 8.14 -2.39 -0.02 2.71 16 31 H 0.07 2.77 7.41 -2.39 -0.02 2.75 16 Total: -1.00 -63.22 246.28 4.23 -58.99 By element: Atomic # 1 Polarization: 23.21 SS G_CDS: 0.39 Total: 23.60 kcal Atomic # 6 Polarization: -36.51 SS G_CDS: 3.07 Total: -33.44 kcal Atomic # 7 Polarization: -97.39 SS G_CDS: -1.25 Total: -98.64 kcal Atomic # 14 Polarization: 47.47 SS G_CDS: 2.03 Total: 49.50 kcal Total: -63.22 4.23 -58.99 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691516350.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.350 kcal (2) G-P(sol) polarization free energy of solvation -63.223 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.127 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.988 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.361 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds