Wall clock time and date at job start Mon Mar 30 2020 01:46:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08995 * 109.46920 * 2 1 4 4 C 1.53001 * 109.47092 * 240.00563 * 2 1 3 5 5 C 1.50703 * 109.47236 * 174.99795 * 4 2 1 6 6 H 1.08003 * 119.99711 * 359.97438 * 5 4 2 7 7 C 1.37868 * 119.99963 * 180.02562 * 5 4 2 8 8 N 1.31520 * 119.99734 * 180.02562 * 7 5 4 9 9 Si 1.86799 * 120.00419 * 359.97438 * 7 5 4 10 10 H 1.48498 * 109.46923 * 90.00066 * 9 7 5 11 11 H 1.48496 * 109.47381 * 210.00304 * 9 7 5 12 12 H 1.48503 * 109.46934 * 330.00492 * 9 7 5 13 13 N 1.46894 * 109.47237 * 120.00459 * 2 1 3 14 14 C 1.47481 * 111.00306 * 33.18179 * 13 2 1 15 15 C 1.53509 * 87.93208 * 221.29919 * 14 13 2 16 16 C 1.52998 * 114.17040 * 272.37542 * 15 14 13 17 17 C 1.47485 * 111.00082 * 297.20930 * 13 2 1 18 18 H 1.09008 * 109.47011 * 169.91224 * 1 2 3 19 19 H 1.09000 * 109.47084 * 289.90891 * 1 2 3 20 20 H 1.09003 * 109.47389 * 49.91417 * 1 2 3 21 21 H 1.09002 * 109.46978 * 294.99826 * 4 2 1 22 22 H 1.09002 * 109.47376 * 54.99819 * 4 2 1 23 23 H 0.97001 * 119.99884 * 179.97438 * 8 7 5 24 24 H 1.09005 * 113.47222 * 336.06379 * 14 13 2 25 25 H 1.09000 * 113.47717 * 106.53037 * 14 13 2 26 26 H 1.08999 * 114.34925 * 139.68310 * 15 14 13 27 27 H 1.09000 * 109.47398 * 153.84079 * 16 15 14 28 28 H 1.09006 * 109.47450 * 273.84320 * 16 15 14 29 29 H 1.08998 * 109.47207 * 33.83765 * 16 15 14 30 30 H 1.08998 * 113.47515 * 253.47313 * 17 13 2 31 31 H 1.09001 * 113.47318 * 23.87496 * 17 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7211 -1.2493 5 6 3.5419 -0.6148 -1.3128 6 1 4.0789 -0.0853 -0.5397 7 6 4.2303 -1.1923 -2.3585 8 7 5.5411 -1.0999 -2.4136 9 14 3.3015 -2.1074 -3.6961 10 1 2.9397 -1.1621 -4.7828 11 1 4.1602 -3.1874 -4.2450 12 1 2.0659 -2.7000 -3.1239 13 7 2.0197 -0.6926 1.1993 14 6 1.1095 -1.7864 1.5867 15 6 1.3058 -1.3577 3.0476 16 6 2.5089 -2.0070 3.7347 17 6 1.6023 0.0137 2.4249 18 1 -0.3633 -1.0119 -0.1800 19 1 -0.3633 0.3499 0.9662 20 1 -0.3634 0.6618 -0.7862 21 1 1.7516 -1.7714 -1.2057 22 1 1.6054 -0.2616 -2.1370 23 1 6.0254 -1.5066 -3.1491 24 1 0.0893 -1.6501 1.2276 25 1 1.5050 -2.7784 1.3683 26 1 0.3983 -1.3873 3.6505 27 1 2.8612 -1.3601 4.5381 28 1 2.2144 -2.9718 4.1477 29 1 3.3080 -2.1517 3.0078 30 1 2.4155 0.5473 2.9169 31 1 0.7144 0.6312 2.2892 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000698504759.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:46:00 Heat of formation + Delta-G solvation = 35.268803 kcal Electronic energy + Delta-G solvation = -11542.119151 eV Core-core repulsion = 9631.836745 eV Total energy + Delta-G solvation = -1910.282407 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 183.132 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -40.13980 -34.27130 -32.10629 -29.31956 -27.75660 -25.61781 -25.01322 -22.37843 -19.66242 -18.10476 -16.55393 -16.23015 -14.75293 -14.48854 -13.76473 -13.19252 -12.85079 -12.75573 -12.48593 -12.11461 -11.74157 -11.43216 -11.04266 -10.72952 -10.63655 -10.60897 -10.04038 -9.87454 -9.60872 -9.51975 -9.02076 -8.40490 -7.95894 -5.88671 -3.82735 3.37000 3.44525 3.47874 4.56377 4.60438 4.73541 5.21812 5.40964 5.49123 5.54965 5.65867 5.70279 5.83943 5.88346 5.98185 6.01282 6.22375 6.25910 6.33855 6.40751 6.47192 6.71309 6.78803 6.97712 7.22874 7.47887 7.81878 7.98074 8.74403 9.22881 9.74230 11.25526 Molecular weight = 183.13amu Principal moments of inertia in cm(-1) A = 0.047971 B = 0.012166 C = 0.011045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 583.544449 B = 2300.912033 C = 2534.488077 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.057 3.943 3 H 0.074 0.926 4 C -0.001 4.001 5 C -0.491 4.491 6 H 0.077 0.923 7 C 0.061 3.939 8 N -0.909 5.909 9 Si 0.875 3.125 10 H -0.280 1.280 11 H -0.289 1.289 12 H -0.269 1.269 13 N -0.433 5.433 14 C -0.013 4.013 15 C -0.121 4.121 16 C -0.127 4.127 17 C -0.011 4.011 18 H 0.058 0.942 19 H 0.049 0.951 20 H 0.056 0.944 21 H 0.015 0.985 22 H 0.012 0.988 23 H 0.259 0.741 24 H 0.075 0.925 25 H 0.078 0.922 26 H 0.071 0.929 27 H 0.052 0.948 28 H 0.049 0.951 29 H 0.072 0.928 30 H 0.077 0.923 31 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.431 -0.277 8.541 13.484 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C -0.052 4.052 3 H 0.093 0.907 4 C -0.038 4.038 5 C -0.530 4.530 6 H 0.095 0.905 7 C -0.139 4.139 8 N -0.549 5.549 9 Si 0.703 3.297 10 H -0.206 1.206 11 H -0.216 1.216 12 H -0.193 1.193 13 N -0.154 5.154 14 C -0.142 4.142 15 C -0.140 4.140 16 C -0.184 4.184 17 C -0.140 4.140 18 H 0.077 0.923 19 H 0.068 0.932 20 H 0.075 0.925 21 H 0.033 0.967 22 H 0.030 0.970 23 H 0.069 0.931 24 H 0.093 0.907 25 H 0.096 0.904 26 H 0.089 0.911 27 H 0.071 0.929 28 H 0.068 0.932 29 H 0.091 0.909 30 H 0.095 0.905 31 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -9.552 -0.441 8.246 12.626 hybrid contribution -1.279 -0.260 -0.840 1.552 sum -10.830 -0.701 7.406 13.139 Atomic orbital electron populations 1.22589 0.99258 1.01620 1.00936 1.22122 0.90431 0.99117 0.93546 0.90732 1.19542 0.97860 0.95177 0.91233 1.21056 0.89490 1.33824 1.08592 0.90499 1.25012 0.94699 0.96266 0.97878 1.69920 1.06418 1.46258 1.32302 0.86868 0.80208 0.80040 0.82620 1.20596 1.21568 1.19338 1.69285 1.41279 1.04948 0.99911 1.24077 0.97481 0.98622 0.93981 1.22527 0.98704 0.96950 0.95821 1.21472 0.97605 0.99166 1.00181 1.23933 0.99731 0.96072 0.94252 0.92323 0.93197 0.92487 0.96686 0.96993 0.93075 0.90696 0.90359 0.91111 0.92933 0.93154 0.90942 0.90477 0.91957 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.01 7.72 37.16 0.29 -2.72 16 2 C 0.06 1.16 2.36 -67.72 -0.16 1.00 16 3 H 0.07 1.58 8.14 -51.93 -0.42 1.16 16 4 C 0.00 -0.01 3.64 -27.88 -0.10 -0.12 16 5 C -0.49 -14.45 9.39 -34.44 -0.32 -14.77 16 6 H 0.08 2.47 7.99 -52.48 -0.42 2.05 16 7 C 0.06 1.83 5.47 -17.82 -0.10 1.74 16 8 N -0.91 -28.97 13.96 55.43 0.77 -28.20 16 9 Si 0.87 22.44 27.47 -169.99 -4.67 17.77 16 10 H -0.28 -7.03 7.11 56.52 0.40 -6.63 16 11 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 12 H -0.27 -6.65 6.54 56.52 0.37 -6.28 16 13 N -0.43 -8.54 5.86 -236.58 -1.39 -9.93 16 14 C -0.01 -0.21 6.79 -7.54 -0.05 -0.26 16 15 C -0.12 -1.72 4.77 -90.09 -0.43 -2.15 16 16 C -0.13 -1.75 9.71 37.16 0.36 -1.39 16 17 C -0.01 -0.17 7.11 -7.54 -0.05 -0.22 16 18 H 0.06 0.93 6.52 -51.92 -0.34 0.59 16 19 H 0.05 0.71 5.83 -51.93 -0.30 0.40 16 20 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 21 H 0.01 0.38 7.12 -51.93 -0.37 0.01 16 22 H 0.01 0.29 7.57 -51.93 -0.39 -0.10 16 23 H 0.26 7.76 8.31 -40.82 -0.34 7.43 16 24 H 0.08 1.15 4.83 -51.93 -0.25 0.90 16 25 H 0.08 1.38 8.12 -51.93 -0.42 0.95 16 26 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 27 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 28 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.07 1.19 7.92 -51.93 -0.41 0.78 16 30 H 0.08 1.21 8.12 -51.93 -0.42 0.79 16 31 H 0.06 0.89 5.98 -51.93 -0.31 0.58 16 LS Contribution 244.01 15.07 3.68 3.68 Total: -1.00 -31.54 244.01 -7.09 -38.63 By element: Atomic # 1 Polarization: 1.86 SS G_CDS: -4.92 Total: -3.06 kcal Atomic # 6 Polarization: -18.32 SS G_CDS: -0.57 Total: -18.89 kcal Atomic # 7 Polarization: -37.51 SS G_CDS: -0.61 Total: -38.13 kcal Atomic # 14 Polarization: 22.44 SS G_CDS: -4.67 Total: 17.77 kcal Total LS contribution 3.68 Total: 3.68 kcal Total: -31.54 -7.09 -38.63 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000698504759.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.899 kcal (2) G-P(sol) polarization free energy of solvation -31.537 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.363 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.094 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.631 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.269 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds