Wall clock time and date at job start Mon Mar 30 2020 02:21:58
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53001 * 1
3 3 H 1.09000 * 115.56429 * 2 1
4 4 C 1.53074 * 117.51116 * 145.71039 * 2 1 3
5 5 C 1.53002 * 117.49572 * 214.31770 * 2 1 3
6 6 C 1.53002 * 117.49968 * 144.99792 * 5 2 1
7 7 C 1.53005 * 117.49602 * 359.97438 * 5 2 1
8 8 N 1.46503 * 109.46591 * 180.08996 * 7 5 2
9 9 C 1.46502 * 120.00112 * 269.99894 * 8 7 5
10 10 C 1.36936 * 120.00014 * 90.00599 * 8 7 5
11 11 H 1.07999 * 120.00185 * 336.87117 * 10 8 7
12 12 C 1.38810 * 120.00073 * 156.88087 * 10 8 7
13 13 N 1.31620 * 120.00190 * 330.78202 * 12 10 8
14 14 Si 1.86801 * 120.00315 * 151.05747 * 12 10 8
15 15 H 1.48497 * 109.47401 * 179.72133 * 14 12 10
16 16 H 1.48500 * 109.46830 * 299.72455 * 14 12 10
17 17 H 1.48501 * 109.47009 * 59.71829 * 14 12 10
18 18 H 1.08991 * 109.47352 * 205.68605 * 1 2 3
19 19 H 1.09000 * 109.46578 * 325.68401 * 1 2 3
20 20 H 1.09004 * 109.47328 * 85.68074 * 1 2 3
21 21 H 1.08998 * 117.51513 * 359.97438 * 4 2 1
22 22 H 1.09002 * 117.51449 * 214.95456 * 4 2 1
23 23 H 1.09000 * 109.46859 * 299.91059 * 6 5 2
24 24 H 1.08998 * 109.46852 * 59.91500 * 6 5 2
25 25 H 1.09004 * 109.46663 * 179.90915 * 6 5 2
26 26 H 1.08992 * 109.47122 * 60.09247 * 7 5 2
27 27 H 1.08998 * 109.47147 * 300.08857 * 7 5 2
28 28 H 1.09004 * 109.47173 * 272.47189 * 9 8 7
29 29 H 1.08996 * 109.47112 * 32.46867 * 9 8 7
30 30 H 1.08998 * 109.47477 * 152.46935 * 9 8 7
31 31 H 0.97004 * 119.99615 * 354.28695 * 13 12 10
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 2.0004 0.9833 0.0000
4 6 2.2371 -1.1217 0.7649
5 6 2.2364 -1.1209 -0.7652
6 6 3.5487 -0.7757 -1.4721
7 6 1.3586 -2.1563 -1.4712
8 7 2.2099 -3.1423 -2.1417
9 6 2.6367 -2.9211 -3.5256
10 6 2.6066 -4.2706 -1.4749
11 1 2.6288 -4.2801 -0.3952
12 6 2.9804 -5.4022 -2.1867
13 7 2.4530 -5.6400 -3.3689
14 14 4.2262 -6.5915 -1.4634
15 1 4.4475 -7.7133 -2.4108
16 1 5.5092 -5.8818 -1.2281
17 1 3.7121 -7.1246 -0.1763
18 1 -0.3633 -0.9260 0.4454
19 1 -0.3632 0.8488 0.5794
20 1 -0.3634 0.0774 -1.0248
21 1 1.6123 -1.8594 1.2684
22 1 3.1724 -0.8763 1.2679
23 1 3.3691 0.0062 -2.2099
24 1 4.2746 -0.4239 -0.7390
25 1 3.9371 -1.6637 -1.9708
26 1 0.7302 -1.6575 -2.2088
27 1 0.7285 -2.6593 -0.7376
28 1 1.8846 -3.3207 -4.2060
29 1 2.7556 -1.8523 -3.7028
30 1 3.5872 -3.4259 -3.6978
31 1 1.7436 -5.0712 -3.7068
RHF calculation, no. of doubly occupied orbitals= 35
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000704044110.mol2 31
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 02:21:58
Heat of formation + Delta-G solvation = 35.708974 kcal
Electronic energy + Delta-G solvation = -11623.387310 eV
Core-core repulsion = 9713.123990 eV
Total energy + Delta-G solvation = -1910.263319 eV
No. of doubly occupied orbitals = 35
Molecular weight
(most abundant/longest-lived isotopes) = 183.132 amu
Computer time = 0.16 seconds
Orbital eigenvalues (eV)
-38.35080 -35.18510 -31.11680 -29.23898 -26.82319 -26.41751 -25.24710 -21.28214
-20.60599 -18.07945 -17.05008 -14.86316 -14.50369 -13.98217 -13.69205 -13.38618
-12.86036 -12.46728 -12.40593 -11.85329 -11.29116 -11.21182 -10.96644 -10.78532
-10.64114 -10.52740 -10.38577 -9.97773 -9.42184 -9.30419 -8.87525 -8.24371
-6.84631 -5.99050 -3.10882 3.54038 3.57836 3.75697 4.23383 4.67724
5.13795 5.23022 5.34854 5.48080 5.59193 5.71043 5.92773 6.06534
6.09595 6.22131 6.27360 6.33248 6.34818 6.54517 6.61664 6.66277
6.71949 6.86929 7.00102 7.10419 7.17397 8.08965 8.65081 9.20692
9.95132 10.34303 11.28235
Molecular weight = 183.13amu
Principal moments of inertia in cm(-1)
A = 0.052874 B = 0.012162 C = 0.011503
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 529.430269 B = 2301.640186 C = 2433.667251
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.117 4.117
2 C -0.166 4.166
3 H 0.092 0.908
4 C -0.170 4.170
5 C -0.122 4.122
6 C -0.110 4.110
7 C 0.188 3.812
8 N -0.599 5.599
9 C 0.134 3.866
10 C -0.350 4.350
11 H 0.057 0.943
12 C -0.024 4.024
13 N -0.915 5.915
14 Si 1.057 2.943
15 H -0.287 1.287
16 H -0.295 1.295
17 H -0.294 1.294
18 H 0.055 0.945
19 H 0.050 0.950
20 H 0.056 0.944
21 H 0.087 0.913
22 H 0.082 0.918
23 H 0.042 0.958
24 H 0.038 0.962
25 H 0.084 0.916
26 H 0.036 0.964
27 H 0.048 0.952
28 H 0.008 0.992
29 H 0.017 0.983
30 H 0.050 0.950
31 H 0.269 0.731
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -0.869 9.240 4.494 10.311
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.174 4.174
2 C -0.185 4.185
3 H 0.110 0.890
4 C -0.207 4.207
5 C -0.125 4.125
6 C -0.168 4.168
7 C 0.060 3.940
8 N -0.322 5.322
9 C -0.012 4.012
10 C -0.479 4.479
11 H 0.075 0.925
12 C -0.226 4.226
13 N -0.555 5.555
14 Si 0.888 3.112
15 H -0.212 1.212
16 H -0.222 1.222
17 H -0.221 1.221
18 H 0.074 0.926
19 H 0.069 0.931
20 H 0.075 0.925
21 H 0.106 0.894
22 H 0.100 0.900
23 H 0.061 0.939
24 H 0.057 0.943
25 H 0.102 0.898
26 H 0.054 0.946
27 H 0.067 0.933
28 H 0.026 0.974
29 H 0.036 0.964
30 H 0.068 0.932
31 H 0.080 0.920
Dipole moment (debyes) X Y Z Total
from point charges 0.007 7.817 4.165 8.857
hybrid contribution -0.821 1.447 0.511 1.741
sum -0.815 9.264 4.675 10.409
Atomic orbital electron populations
1.21271 0.93532 1.01239 1.01346 1.22402 0.94814 0.94099 1.07207
0.89011 1.23125 1.01544 1.00688 0.95312 1.22536 0.98573 0.98391
0.92995 1.21310 0.94541 1.01769 0.99135 1.20233 0.90433 0.88747
0.94540 1.43881 1.56450 1.20755 1.11066 1.21018 0.98495 0.95921
0.85725 1.19908 1.45014 0.91144 0.91859 0.92535 1.25695 1.02533
0.96723 0.97634 1.70786 1.25351 1.37876 1.21496 0.83638 0.76588
0.76029 0.74992 1.21237 1.22201 1.22094 0.92599 0.93107 0.92533
0.89406 0.89977 0.93921 0.94277 0.89760 0.94623 0.93331 0.97433
0.96444 0.93168 0.91982
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.12 -1.61 9.21 37.16 0.34 -1.27 16
2 C -0.17 -2.59 6.13 -90.58 -0.56 -3.14 16
3 H 0.09 1.32 8.14 -51.93 -0.42 0.90 16
4 C -0.17 -2.91 9.47 -26.69 -0.25 -3.16 16
5 C -0.12 -2.29 2.57 -154.50 -0.40 -2.68 16
6 C -0.11 -2.04 8.84 37.16 0.33 -1.71 16
7 C 0.19 4.05 4.87 -4.04 -0.02 4.03 16
8 N -0.60 -15.23 1.97 -181.12 -0.36 -15.58 16
9 C 0.13 3.24 7.57 59.85 0.45 3.69 16
10 C -0.35 -9.92 9.48 -15.06 -0.14 -10.06 16
11 H 0.06 1.63 7.98 -52.49 -0.42 1.21 16
12 C -0.02 -0.68 4.63 -17.43 -0.08 -0.76 16
13 N -0.91 -27.89 12.71 55.49 0.71 -27.18 16
14 Si 1.06 25.78 30.01 -169.99 -5.10 20.68 16
15 H -0.29 -7.08 7.11 56.52 0.40 -6.67 16
16 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16
17 H -0.29 -6.89 7.11 56.52 0.40 -6.48 16
18 H 0.05 0.79 7.77 -51.93 -0.40 0.39 16
19 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16
20 H 0.06 0.77 8.02 -51.93 -0.42 0.36 16
21 H 0.09 1.53 7.96 -51.93 -0.41 1.12 16
22 H 0.08 1.33 8.05 -51.93 -0.42 0.91 16
23 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16
24 H 0.04 0.66 7.90 -51.93 -0.41 0.25 16
25 H 0.08 1.80 5.56 -51.93 -0.29 1.51 16
26 H 0.04 0.73 7.95 -51.93 -0.41 0.32 16
27 H 0.05 1.08 7.67 -51.93 -0.40 0.68 16
28 H 0.01 0.19 6.82 -51.93 -0.35 -0.16 16
29 H 0.02 0.36 7.05 -51.93 -0.37 0.00 16
30 H 0.05 1.31 7.26 -51.93 -0.38 0.93 16
31 H 0.27 8.26 6.31 -40.82 -0.26 8.00 16
LS Contribution 249.48 15.07 3.76 3.76
Total: -1.00 -29.93 249.48 -6.31 -36.24
By element:
Atomic # 1 Polarization: 2.15 SS G_CDS: -5.00 Total: -2.84 kcal
Atomic # 6 Polarization: -14.75 SS G_CDS: -0.32 Total: -15.07 kcal
Atomic # 7 Polarization: -43.12 SS G_CDS: 0.35 Total: -42.77 kcal
Atomic # 14 Polarization: 25.78 SS G_CDS: -5.10 Total: 20.68 kcal
Total LS contribution 3.76 Total: 3.76 kcal
Total: -29.93 -6.31 -36.24 kcal
The number of atoms in the molecule is 31
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000704044110.mol2 31
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 71.952 kcal
(2) G-P(sol) polarization free energy of solvation -29.930 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.023 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.314 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.243 kcal
(6) G-S(sol) free energy of system = (1) + (5) 35.709 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.17 seconds