Wall clock time and date at job start Mon Mar 30 2020 02:21:58
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53001 * 1
3 3 H 1.09000 * 115.56429 * 2 1
4 4 C 1.53074 * 117.51116 * 145.71039 * 2 1 3
5 5 C 1.53002 * 117.49572 * 214.31770 * 2 1 3
6 6 C 1.53002 * 117.49968 * 144.99792 * 5 2 1
7 7 C 1.53005 * 117.49602 * 359.97438 * 5 2 1
8 8 N 1.46503 * 109.46591 * 180.08996 * 7 5 2
9 9 C 1.46502 * 120.00112 * 269.99894 * 8 7 5
10 10 C 1.36936 * 120.00014 * 90.00599 * 8 7 5
11 11 H 1.07999 * 120.00185 * 336.87117 * 10 8 7
12 12 C 1.38810 * 120.00073 * 156.88087 * 10 8 7
13 13 N 1.31620 * 120.00190 * 330.78202 * 12 10 8
14 14 Si 1.86801 * 120.00315 * 151.05747 * 12 10 8
15 15 H 1.48497 * 109.47401 * 179.72133 * 14 12 10
16 16 H 1.48500 * 109.46830 * 299.72455 * 14 12 10
17 17 H 1.48501 * 109.47009 * 59.71829 * 14 12 10
18 18 H 1.08991 * 109.47352 * 205.68605 * 1 2 3
19 19 H 1.09000 * 109.46578 * 325.68401 * 1 2 3
20 20 H 1.09004 * 109.47328 * 85.68074 * 1 2 3
21 21 H 1.08998 * 117.51513 * 359.97438 * 4 2 1
22 22 H 1.09002 * 117.51449 * 214.95456 * 4 2 1
23 23 H 1.09000 * 109.46859 * 299.91059 * 6 5 2
24 24 H 1.08998 * 109.46852 * 59.91500 * 6 5 2
25 25 H 1.09004 * 109.46663 * 179.90915 * 6 5 2
26 26 H 1.08992 * 109.47122 * 60.09247 * 7 5 2
27 27 H 1.08998 * 109.47147 * 300.08857 * 7 5 2
28 28 H 1.09004 * 109.47173 * 272.47189 * 9 8 7
29 29 H 1.08996 * 109.47112 * 32.46867 * 9 8 7
30 30 H 1.08998 * 109.47477 * 152.46935 * 9 8 7
31 31 H 0.97004 * 119.99615 * 354.28695 * 13 12 10
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 2.0004 0.9833 0.0000
4 6 2.2371 -1.1217 0.7649
5 6 2.2364 -1.1209 -0.7652
6 6 3.5487 -0.7757 -1.4721
7 6 1.3586 -2.1563 -1.4712
8 7 2.2099 -3.1423 -2.1417
9 6 2.6367 -2.9211 -3.5256
10 6 2.6066 -4.2706 -1.4749
11 1 2.6288 -4.2801 -0.3952
12 6 2.9804 -5.4022 -2.1867
13 7 2.4530 -5.6400 -3.3689
14 14 4.2262 -6.5915 -1.4634
15 1 4.4475 -7.7133 -2.4108
16 1 5.5092 -5.8818 -1.2281
17 1 3.7121 -7.1246 -0.1763
18 1 -0.3633 -0.9260 0.4454
19 1 -0.3632 0.8488 0.5794
20 1 -0.3634 0.0774 -1.0248
21 1 1.6123 -1.8594 1.2684
22 1 3.1724 -0.8763 1.2679
23 1 3.3691 0.0062 -2.2099
24 1 4.2746 -0.4239 -0.7390
25 1 3.9371 -1.6637 -1.9708
26 1 0.7302 -1.6575 -2.2088
27 1 0.7285 -2.6593 -0.7376
28 1 1.8846 -3.3207 -4.2060
29 1 2.7556 -1.8523 -3.7028
30 1 3.5872 -3.4259 -3.6978
31 1 1.7436 -5.0712 -3.7068
RHF calculation, no. of doubly occupied orbitals= 35
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000704044110.mol2 31
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 02:21:58
Heat of formation + Delta-G solvation = 19.291484 kcal
Electronic energy + Delta-G solvation = -11624.099226 eV
Core-core repulsion = 9713.123990 eV
Total energy + Delta-G solvation = -1910.975235 eV
No. of doubly occupied orbitals = 35
Molecular weight
(most abundant/longest-lived isotopes) = 183.132 amu
Computer time = 0.16 seconds
Orbital eigenvalues (eV)
-39.83293 -37.10649 -33.14082 -30.60488 -28.63521 -27.85979 -27.24408 -23.27698
-21.91740 -19.77688 -18.97217 -16.43141 -16.25921 -15.73692 -15.57745 -15.18705
-14.29430 -14.11881 -13.75553 -13.13227 -12.98724 -12.94971 -12.63552 -12.54178
-12.40786 -12.25863 -11.94852 -11.90808 -11.50307 -10.71343 -10.46309 -10.17770
-8.94634 -8.22723 -5.32862 1.57392 1.64587 1.83813 2.66043 2.88157
3.21426 3.61865 3.85157 3.96130 4.12589 4.37675 4.46751 4.63908
4.67647 4.75614 4.88106 4.94571 4.96380 4.98895 5.08495 5.12857
5.17631 5.21320 5.35184 5.49094 5.58388 5.86568 6.41010 7.08200
7.82832 8.21515 9.01791
Molecular weight = 183.13amu
Principal moments of inertia in cm(-1)
A = 0.052874 B = 0.012162 C = 0.011503
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 529.430269 B = 2301.640186 C = 2433.667251
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.119 4.119
2 C -0.135 4.135
3 H 0.114 0.886
4 C -0.175 4.175
5 C -0.148 4.148
6 C -0.104 4.104
7 C 0.189 3.811
8 N -0.613 5.613
9 C 0.148 3.852
10 C -0.351 4.351
11 H 0.048 0.952
12 C -0.076 4.076
13 N -0.942 5.942
14 Si 1.107 2.893
15 H -0.292 1.292
16 H -0.282 1.282
17 H -0.277 1.277
18 H 0.045 0.955
19 H 0.077 0.923
20 H 0.058 0.942
21 H 0.078 0.922
22 H 0.093 0.907
23 H 0.058 0.942
24 H 0.053 0.947
25 H 0.049 0.951
26 H 0.044 0.956
27 H 0.034 0.966
28 H -0.009 1.009
29 H 0.049 0.951
30 H 0.024 0.976
31 H 0.255 0.745
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -0.612 10.774 5.641 12.177
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.176 4.176
2 C -0.154 4.154
3 H 0.132 0.868
4 C -0.212 4.212
5 C -0.151 4.151
6 C -0.161 4.161
7 C 0.063 3.937
8 N -0.337 5.337
9 C 0.003 3.997
10 C -0.480 4.480
11 H 0.066 0.934
12 C -0.272 4.272
13 N -0.584 5.584
14 Si 0.932 3.068
15 H -0.218 1.218
16 H -0.209 1.209
17 H -0.203 1.203
18 H 0.064 0.936
19 H 0.096 0.904
20 H 0.077 0.923
21 H 0.097 0.903
22 H 0.111 0.889
23 H 0.077 0.923
24 H 0.072 0.928
25 H 0.068 0.932
26 H 0.062 0.938
27 H 0.052 0.948
28 H 0.009 0.991
29 H 0.067 0.933
30 H 0.043 0.957
31 H 0.065 0.935
Dipole moment (debyes) X Y Z Total
from point charges 0.248 9.391 5.336 10.804
hybrid contribution -0.963 1.047 0.183 1.434
sum -0.715 10.439 5.519 11.829
Atomic orbital electron populations
1.21327 0.92309 1.02016 1.01940 1.22522 0.95703 0.93898 1.03235
0.86791 1.23183 1.02360 1.01607 0.94069 1.22317 0.99040 0.99952
0.93771 1.21212 0.94574 1.00683 0.99648 1.20295 0.90505 0.88549
0.94323 1.44065 1.57304 1.20852 1.11444 1.20831 0.96532 0.97294
0.85041 1.20071 1.44241 0.92033 0.91677 0.93448 1.27000 1.03874
0.98675 0.97659 1.70909 1.26234 1.38506 1.22792 0.82962 0.74895
0.74132 0.74784 1.21812 1.20851 1.20317 0.93558 0.90365 0.92344
0.90328 0.88901 0.92349 0.92791 0.93158 0.93769 0.94797 0.99054
0.93299 0.95732 0.93492
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.12 -2.91 9.21 71.98 0.66 -2.25 16
2 C -0.13 -3.74 6.13 -10.77 -0.07 -3.81 16
3 H 0.11 2.73 8.14 -2.39 -0.02 2.71 16
4 C -0.18 -5.63 9.47 30.62 0.29 -5.34 16
5 C -0.15 -5.28 2.57 -52.18 -0.13 -5.41 16
6 C -0.10 -3.63 8.84 71.98 0.64 -3.00 16
7 C 0.19 8.05 4.87 86.38 0.42 8.47 16
8 N -0.61 -31.39 1.97 -726.93 -1.43 -32.82 16
9 C 0.15 7.27 7.57 127.77 0.97 8.24 16
10 C -0.35 -20.04 9.48 84.03 0.80 -19.24 16
11 H 0.05 2.75 7.98 -2.91 -0.02 2.73 16
12 C -0.08 -4.39 4.63 84.86 0.39 -4.00 16
13 N -0.94 -58.58 12.71 21.65 0.28 -58.31 16
14 Si 1.11 52.24 30.01 68.60 2.06 54.30 16
15 H -0.29 -13.96 7.11 99.48 0.71 -13.25 16
16 H -0.28 -12.62 7.11 99.48 0.71 -11.92 16
17 H -0.28 -12.23 7.11 99.48 0.71 -11.52 16
18 H 0.05 1.22 7.77 -2.39 -0.02 1.20 16
19 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16
20 H 0.06 1.43 8.02 -2.39 -0.02 1.41 16
21 H 0.08 2.65 7.96 -2.39 -0.02 2.63 16
22 H 0.09 2.77 8.05 -2.39 -0.02 2.75 16
23 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16
24 H 0.05 1.69 7.90 -2.39 -0.02 1.67 16
25 H 0.05 2.10 5.56 -2.38 -0.01 2.09 16
26 H 0.04 1.77 7.95 -2.39 -0.02 1.75 16
27 H 0.03 1.51 7.67 -2.39 -0.02 1.49 16
28 H -0.01 -0.44 6.82 -2.38 -0.02 -0.46 16
29 H 0.05 2.04 7.05 -2.39 -0.02 2.02 16
30 H 0.02 1.29 7.26 -2.39 -0.02 1.27 16
31 H 0.25 16.13 6.31 -92.71 -0.58 15.54 16
Total: -1.00 -63.91 249.48 6.13 -57.78
By element:
Atomic # 1 Polarization: 4.13 SS G_CDS: 1.26 Total: 5.39 kcal
Atomic # 6 Polarization: -30.30 SS G_CDS: 3.97 Total: -26.33 kcal
Atomic # 7 Polarization: -89.97 SS G_CDS: -1.15 Total: -91.13 kcal
Atomic # 14 Polarization: 52.24 SS G_CDS: 2.06 Total: 54.30 kcal
Total: -63.91 6.13 -57.78 kcal
The number of atoms in the molecule is 31
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000704044110.mol2 31
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 77.072 kcal
(2) G-P(sol) polarization free energy of solvation -63.910 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.162 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.129 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.780 kcal
(6) G-S(sol) free energy of system = (1) + (5) 19.291 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.16 seconds