Wall clock time and date at job start Mon Mar 30 2020 02:21:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 115.56429 * 2 1 4 4 C 1.53074 * 117.51116 * 145.71039 * 2 1 3 5 5 C 1.53002 * 117.49572 * 214.31770 * 2 1 3 6 6 C 1.53002 * 117.49968 * 144.99792 * 5 2 1 7 7 C 1.53005 * 117.49602 * 359.97438 * 5 2 1 8 8 N 1.46503 * 109.46591 * 180.08996 * 7 5 2 9 9 C 1.46502 * 120.00112 * 269.99894 * 8 7 5 10 10 C 1.36936 * 120.00014 * 90.00599 * 8 7 5 11 11 H 1.07999 * 120.00185 * 336.87117 * 10 8 7 12 12 C 1.38810 * 120.00073 * 156.88087 * 10 8 7 13 13 N 1.31620 * 120.00190 * 330.78202 * 12 10 8 14 14 Si 1.86801 * 120.00315 * 151.05747 * 12 10 8 15 15 H 1.48497 * 109.47401 * 179.72133 * 14 12 10 16 16 H 1.48500 * 109.46830 * 299.72455 * 14 12 10 17 17 H 1.48501 * 109.47009 * 59.71829 * 14 12 10 18 18 H 1.08991 * 109.47352 * 205.68605 * 1 2 3 19 19 H 1.09000 * 109.46578 * 325.68401 * 1 2 3 20 20 H 1.09004 * 109.47328 * 85.68074 * 1 2 3 21 21 H 1.08998 * 117.51513 * 359.97438 * 4 2 1 22 22 H 1.09002 * 117.51449 * 214.95456 * 4 2 1 23 23 H 1.09000 * 109.46859 * 299.91059 * 6 5 2 24 24 H 1.08998 * 109.46852 * 59.91500 * 6 5 2 25 25 H 1.09004 * 109.46663 * 179.90915 * 6 5 2 26 26 H 1.08992 * 109.47122 * 60.09247 * 7 5 2 27 27 H 1.08998 * 109.47147 * 300.08857 * 7 5 2 28 28 H 1.09004 * 109.47173 * 272.47189 * 9 8 7 29 29 H 1.08996 * 109.47112 * 32.46867 * 9 8 7 30 30 H 1.08998 * 109.47477 * 152.46935 * 9 8 7 31 31 H 0.97004 * 119.99615 * 354.28695 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0004 0.9833 0.0000 4 6 2.2371 -1.1217 0.7649 5 6 2.2364 -1.1209 -0.7652 6 6 3.5487 -0.7757 -1.4721 7 6 1.3586 -2.1563 -1.4712 8 7 2.2099 -3.1423 -2.1417 9 6 2.6367 -2.9211 -3.5256 10 6 2.6066 -4.2706 -1.4749 11 1 2.6288 -4.2801 -0.3952 12 6 2.9804 -5.4022 -2.1867 13 7 2.4530 -5.6400 -3.3689 14 14 4.2262 -6.5915 -1.4634 15 1 4.4475 -7.7133 -2.4108 16 1 5.5092 -5.8818 -1.2281 17 1 3.7121 -7.1246 -0.1763 18 1 -0.3633 -0.9260 0.4454 19 1 -0.3632 0.8488 0.5794 20 1 -0.3634 0.0774 -1.0248 21 1 1.6123 -1.8594 1.2684 22 1 3.1724 -0.8763 1.2679 23 1 3.3691 0.0062 -2.2099 24 1 4.2746 -0.4239 -0.7390 25 1 3.9371 -1.6637 -1.9708 26 1 0.7302 -1.6575 -2.2088 27 1 0.7285 -2.6593 -0.7376 28 1 1.8846 -3.3207 -4.2060 29 1 2.7556 -1.8523 -3.7028 30 1 3.5872 -3.4259 -3.6978 31 1 1.7436 -5.0712 -3.7068 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000704044110.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:21:58 Heat of formation + Delta-G solvation = 19.291484 kcal Electronic energy + Delta-G solvation = -11624.099226 eV Core-core repulsion = 9713.123990 eV Total energy + Delta-G solvation = -1910.975235 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 183.132 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.83293 -37.10649 -33.14082 -30.60488 -28.63521 -27.85979 -27.24408 -23.27698 -21.91740 -19.77688 -18.97217 -16.43141 -16.25921 -15.73692 -15.57745 -15.18705 -14.29430 -14.11881 -13.75553 -13.13227 -12.98724 -12.94971 -12.63552 -12.54178 -12.40786 -12.25863 -11.94852 -11.90808 -11.50307 -10.71343 -10.46309 -10.17770 -8.94634 -8.22723 -5.32862 1.57392 1.64587 1.83813 2.66043 2.88157 3.21426 3.61865 3.85157 3.96130 4.12589 4.37675 4.46751 4.63908 4.67647 4.75614 4.88106 4.94571 4.96380 4.98895 5.08495 5.12857 5.17631 5.21320 5.35184 5.49094 5.58388 5.86568 6.41010 7.08200 7.82832 8.21515 9.01791 Molecular weight = 183.13amu Principal moments of inertia in cm(-1) A = 0.052874 B = 0.012162 C = 0.011503 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 529.430269 B = 2301.640186 C = 2433.667251 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.135 4.135 3 H 0.114 0.886 4 C -0.175 4.175 5 C -0.148 4.148 6 C -0.104 4.104 7 C 0.189 3.811 8 N -0.613 5.613 9 C 0.148 3.852 10 C -0.351 4.351 11 H 0.048 0.952 12 C -0.076 4.076 13 N -0.942 5.942 14 Si 1.107 2.893 15 H -0.292 1.292 16 H -0.282 1.282 17 H -0.277 1.277 18 H 0.045 0.955 19 H 0.077 0.923 20 H 0.058 0.942 21 H 0.078 0.922 22 H 0.093 0.907 23 H 0.058 0.942 24 H 0.053 0.947 25 H 0.049 0.951 26 H 0.044 0.956 27 H 0.034 0.966 28 H -0.009 1.009 29 H 0.049 0.951 30 H 0.024 0.976 31 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.612 10.774 5.641 12.177 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.154 4.154 3 H 0.132 0.868 4 C -0.212 4.212 5 C -0.151 4.151 6 C -0.161 4.161 7 C 0.063 3.937 8 N -0.337 5.337 9 C 0.003 3.997 10 C -0.480 4.480 11 H 0.066 0.934 12 C -0.272 4.272 13 N -0.584 5.584 14 Si 0.932 3.068 15 H -0.218 1.218 16 H -0.209 1.209 17 H -0.203 1.203 18 H 0.064 0.936 19 H 0.096 0.904 20 H 0.077 0.923 21 H 0.097 0.903 22 H 0.111 0.889 23 H 0.077 0.923 24 H 0.072 0.928 25 H 0.068 0.932 26 H 0.062 0.938 27 H 0.052 0.948 28 H 0.009 0.991 29 H 0.067 0.933 30 H 0.043 0.957 31 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 0.248 9.391 5.336 10.804 hybrid contribution -0.963 1.047 0.183 1.434 sum -0.715 10.439 5.519 11.829 Atomic orbital electron populations 1.21327 0.92309 1.02016 1.01940 1.22522 0.95703 0.93898 1.03235 0.86791 1.23183 1.02360 1.01607 0.94069 1.22317 0.99040 0.99952 0.93771 1.21212 0.94574 1.00683 0.99648 1.20295 0.90505 0.88549 0.94323 1.44065 1.57304 1.20852 1.11444 1.20831 0.96532 0.97294 0.85041 1.20071 1.44241 0.92033 0.91677 0.93448 1.27000 1.03874 0.98675 0.97659 1.70909 1.26234 1.38506 1.22792 0.82962 0.74895 0.74132 0.74784 1.21812 1.20851 1.20317 0.93558 0.90365 0.92344 0.90328 0.88901 0.92349 0.92791 0.93158 0.93769 0.94797 0.99054 0.93299 0.95732 0.93492 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.91 9.21 71.98 0.66 -2.25 16 2 C -0.13 -3.74 6.13 -10.77 -0.07 -3.81 16 3 H 0.11 2.73 8.14 -2.39 -0.02 2.71 16 4 C -0.18 -5.63 9.47 30.62 0.29 -5.34 16 5 C -0.15 -5.28 2.57 -52.18 -0.13 -5.41 16 6 C -0.10 -3.63 8.84 71.98 0.64 -3.00 16 7 C 0.19 8.05 4.87 86.38 0.42 8.47 16 8 N -0.61 -31.39 1.97 -726.93 -1.43 -32.82 16 9 C 0.15 7.27 7.57 127.77 0.97 8.24 16 10 C -0.35 -20.04 9.48 84.03 0.80 -19.24 16 11 H 0.05 2.75 7.98 -2.91 -0.02 2.73 16 12 C -0.08 -4.39 4.63 84.86 0.39 -4.00 16 13 N -0.94 -58.58 12.71 21.65 0.28 -58.31 16 14 Si 1.11 52.24 30.01 68.60 2.06 54.30 16 15 H -0.29 -13.96 7.11 99.48 0.71 -13.25 16 16 H -0.28 -12.62 7.11 99.48 0.71 -11.92 16 17 H -0.28 -12.23 7.11 99.48 0.71 -11.52 16 18 H 0.05 1.22 7.77 -2.39 -0.02 1.20 16 19 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 20 H 0.06 1.43 8.02 -2.39 -0.02 1.41 16 21 H 0.08 2.65 7.96 -2.39 -0.02 2.63 16 22 H 0.09 2.77 8.05 -2.39 -0.02 2.75 16 23 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 24 H 0.05 1.69 7.90 -2.39 -0.02 1.67 16 25 H 0.05 2.10 5.56 -2.38 -0.01 2.09 16 26 H 0.04 1.77 7.95 -2.39 -0.02 1.75 16 27 H 0.03 1.51 7.67 -2.39 -0.02 1.49 16 28 H -0.01 -0.44 6.82 -2.38 -0.02 -0.46 16 29 H 0.05 2.04 7.05 -2.39 -0.02 2.02 16 30 H 0.02 1.29 7.26 -2.39 -0.02 1.27 16 31 H 0.25 16.13 6.31 -92.71 -0.58 15.54 16 Total: -1.00 -63.91 249.48 6.13 -57.78 By element: Atomic # 1 Polarization: 4.13 SS G_CDS: 1.26 Total: 5.39 kcal Atomic # 6 Polarization: -30.30 SS G_CDS: 3.97 Total: -26.33 kcal Atomic # 7 Polarization: -89.97 SS G_CDS: -1.15 Total: -91.13 kcal Atomic # 14 Polarization: 52.24 SS G_CDS: 2.06 Total: 54.30 kcal Total: -63.91 6.13 -57.78 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000704044110.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.072 kcal (2) G-P(sol) polarization free energy of solvation -63.910 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.162 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.129 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.780 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.291 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds