Wall clock time and date at job start Mon Mar 30 2020 02:22:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09003 * 115.55269 * 2 1 4 4 C 1.53078 * 117.51327 * 214.27217 * 2 1 3 5 5 C 1.53005 * 59.98485 * 252.52288 * 4 2 1 6 6 C 1.52995 * 117.49899 * 252.49983 * 5 4 2 7 7 C 1.52996 * 117.49729 * 107.49870 * 5 4 2 8 8 N 1.46505 * 109.46819 * 111.25166 * 7 5 4 9 9 C 1.46499 * 120.00339 * 270.00146 * 8 7 5 10 10 C 1.36936 * 119.99693 * 90.00242 * 8 7 5 11 11 H 1.08007 * 120.00437 * 19.39781 * 10 8 7 12 12 C 1.38810 * 119.99950 * 199.39758 * 10 8 7 13 13 N 1.31612 * 119.99986 * 15.39176 * 12 10 8 14 14 Si 1.86802 * 120.00046 * 195.39974 * 12 10 8 15 15 H 1.48499 * 109.47675 * 84.99241 * 14 12 10 16 16 H 1.48497 * 109.47268 * 205.00034 * 14 12 10 17 17 H 1.48507 * 109.47143 * 324.99274 * 14 12 10 18 18 H 1.08995 * 109.47348 * 274.33320 * 1 2 3 19 19 H 1.08997 * 109.46749 * 34.33677 * 1 2 3 20 20 H 1.09001 * 109.46764 * 154.33240 * 1 2 3 21 21 H 1.09005 * 117.49081 * 145.03757 * 4 2 1 22 22 H 1.08991 * 117.51436 * 0.02562 * 4 2 1 23 23 H 1.09001 * 109.47299 * 248.74616 * 6 5 4 24 24 H 1.08995 * 109.47769 * 8.74748 * 6 5 4 25 25 H 1.09005 * 109.47190 * 128.74989 * 6 5 4 26 26 H 1.08991 * 109.47829 * 231.25328 * 7 5 4 27 27 H 1.09008 * 109.47208 * 351.25757 * 7 5 4 28 28 H 1.08992 * 109.47104 * 95.11390 * 9 8 7 29 29 H 1.09003 * 109.47205 * 215.12032 * 9 8 7 30 30 H 1.09003 * 109.47189 * 335.11416 * 9 8 7 31 31 H 0.97006 * 120.00134 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0002 0.9834 0.0000 4 6 2.2372 -1.1219 -0.7645 5 6 2.2365 -1.1207 0.7655 6 6 3.5487 -0.7752 1.4723 7 6 1.3588 -2.1555 1.4723 8 7 2.2101 -3.1413 2.1431 9 6 2.6342 -4.3489 1.4302 10 6 2.6094 -2.9340 3.4364 11 1 2.0707 -2.2386 4.0631 12 6 3.7067 -3.6175 3.9421 13 7 4.5401 -4.2224 3.1225 14 14 4.0003 -3.6790 5.7858 15 1 3.2142 -4.7924 6.3755 16 1 5.4449 -3.8987 6.0500 17 1 3.5751 -2.3945 6.3979 18 1 -0.3634 0.0776 1.0247 19 1 -0.3633 0.8486 -0.5797 20 1 -0.3633 -0.9263 -0.4451 21 1 3.1724 -0.8762 -1.2676 22 1 1.6124 -1.8597 -1.2678 23 1 3.9373 -1.6629 1.9714 24 1 4.2746 -0.4235 0.7392 25 1 3.3691 0.0070 2.2099 26 1 0.7306 -1.6563 2.2099 27 1 0.7284 -2.6589 0.7392 28 1 3.6185 -4.1851 0.9917 29 1 2.6818 -5.1849 2.1279 30 1 1.9177 -4.5751 0.6405 31 1 5.3071 -4.6998 3.4758 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000704044112.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:22:00 Heat of formation + Delta-G solvation = 39.318419 kcal Electronic energy + Delta-G solvation = -11667.059488 eV Core-core repulsion = 9756.952686 eV Total energy + Delta-G solvation = -1910.106802 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 183.132 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -38.17730 -34.89086 -31.03294 -29.18000 -26.60061 -25.96549 -25.56617 -21.35067 -20.52513 -17.77691 -16.56217 -14.89118 -14.40114 -14.09083 -13.58104 -12.93626 -12.69731 -12.25956 -12.03999 -11.62818 -11.26075 -10.97565 -10.87640 -10.80448 -10.64257 -10.35073 -10.17880 -9.91630 -9.81706 -9.11816 -8.68087 -8.41143 -6.70778 -5.65964 -3.07842 3.42455 3.49095 3.49609 4.36857 4.57972 5.26935 5.37211 5.47278 5.54827 5.69879 5.87659 6.10711 6.18457 6.21076 6.34489 6.37887 6.49455 6.64580 6.75535 6.81929 6.92159 6.96124 7.06610 7.46737 7.73784 7.81343 7.88744 8.45244 9.31093 9.95268 10.43800 11.38645 Molecular weight = 183.13amu Principal moments of inertia in cm(-1) A = 0.058537 B = 0.012114 C = 0.011693 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 478.216624 B = 2310.809626 C = 2394.035754 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.170 4.170 3 H 0.090 0.910 4 C -0.178 4.178 5 C -0.117 4.117 6 C -0.114 4.114 7 C 0.186 3.814 8 N -0.598 5.598 9 C 0.165 3.835 10 C -0.244 4.244 11 H 0.068 0.932 12 C -0.002 4.002 13 N -0.908 5.908 14 Si 0.900 3.100 15 H -0.289 1.289 16 H -0.292 1.292 17 H -0.281 1.281 18 H 0.056 0.944 19 H 0.048 0.952 20 H 0.053 0.947 21 H 0.080 0.920 22 H 0.083 0.917 23 H 0.111 0.889 24 H 0.026 0.974 25 H 0.039 0.961 26 H 0.046 0.954 27 H 0.037 0.963 28 H 0.028 0.972 29 H 0.042 0.958 30 H -0.005 1.005 31 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.922 5.100 -4.822 8.572 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.189 4.189 3 H 0.109 0.891 4 C -0.215 4.215 5 C -0.120 4.120 6 C -0.171 4.171 7 C 0.059 3.941 8 N -0.320 5.320 9 C 0.021 3.979 10 C -0.374 4.374 11 H 0.086 0.914 12 C -0.200 4.200 13 N -0.554 5.554 14 Si 0.731 3.269 15 H -0.216 1.216 16 H -0.219 1.219 17 H -0.207 1.207 18 H 0.075 0.925 19 H 0.067 0.933 20 H 0.072 0.928 21 H 0.099 0.901 22 H 0.102 0.898 23 H 0.130 0.870 24 H 0.045 0.955 25 H 0.058 0.942 26 H 0.065 0.935 27 H 0.055 0.945 28 H 0.047 0.953 29 H 0.061 0.939 30 H 0.013 0.987 31 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -4.775 4.969 -4.768 8.380 hybrid contribution 0.404 0.070 0.826 0.922 sum -4.371 5.038 -3.942 7.748 Atomic orbital electron populations 1.21257 0.93707 1.00928 1.01330 1.22399 0.94620 0.94293 1.07598 0.89146 1.23139 1.01492 1.01028 0.95833 1.22710 0.99193 0.98069 0.91984 1.21364 0.93517 1.03702 0.98497 1.20374 0.91246 0.88622 0.93882 1.43990 1.58049 1.18405 1.11584 1.20770 0.95470 0.88465 0.93223 1.19175 1.08142 1.23304 0.86790 0.91373 1.24903 0.95903 1.01553 0.97594 1.70088 1.14111 1.38799 1.32356 0.86330 0.76847 0.77872 0.85882 1.21633 1.21887 1.20660 0.92456 0.93293 0.92841 0.90106 0.89805 0.87004 0.95458 0.94187 0.93545 0.94451 0.95326 0.93911 0.98677 0.93850 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.61 9.21 37.16 0.34 -1.27 16 2 C -0.17 -2.79 6.13 -90.58 -0.56 -3.34 16 3 H 0.09 1.42 8.14 -51.93 -0.42 1.00 16 4 C -0.18 -3.09 9.47 -26.69 -0.25 -3.34 16 5 C -0.12 -2.30 2.57 -154.51 -0.40 -2.70 16 6 C -0.11 -2.46 9.37 37.15 0.35 -2.11 16 7 C 0.19 3.97 4.92 -4.04 -0.02 3.95 16 8 N -0.60 -15.11 2.19 -181.12 -0.40 -15.51 16 9 C 0.17 4.15 9.02 59.85 0.54 4.69 16 10 C -0.24 -6.65 7.72 -15.06 -0.12 -6.77 16 11 H 0.07 1.84 7.86 -52.48 -0.41 1.43 16 12 C 0.00 -0.05 4.99 -17.43 -0.09 -0.14 16 13 N -0.91 -26.21 10.63 55.49 0.59 -25.62 16 14 Si 0.90 21.94 29.58 -169.99 -5.03 16.91 16 15 H -0.29 -7.07 7.11 56.52 0.40 -6.66 16 16 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 17 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 18 H 0.06 0.80 8.02 -51.93 -0.42 0.39 16 19 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 20 H 0.05 0.73 7.77 -51.93 -0.40 0.33 16 21 H 0.08 1.36 8.05 -51.93 -0.42 0.94 16 22 H 0.08 1.39 7.96 -51.93 -0.41 0.98 16 23 H 0.11 2.90 5.57 -51.93 -0.29 2.62 16 24 H 0.03 0.54 7.90 -51.93 -0.41 0.13 16 25 H 0.04 0.83 8.14 -51.93 -0.42 0.40 16 26 H 0.05 0.98 7.91 -51.93 -0.41 0.57 16 27 H 0.04 0.74 7.49 -51.92 -0.39 0.36 16 28 H 0.03 0.77 7.42 -51.93 -0.39 0.39 16 29 H 0.04 1.14 7.16 -51.93 -0.37 0.77 16 30 H -0.01 -0.12 7.84 -51.93 -0.41 -0.53 16 31 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 LS Contribution 250.81 15.07 3.78 3.78 Total: -1.00 -28.18 250.81 -6.38 -34.56 By element: Atomic # 1 Polarization: 2.03 SS G_CDS: -5.13 Total: -3.10 kcal Atomic # 6 Polarization: -10.83 SS G_CDS: -0.20 Total: -11.02 kcal Atomic # 7 Polarization: -41.32 SS G_CDS: 0.19 Total: -41.13 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.03 Total: 16.91 kcal Total LS contribution 3.78 Total: 3.78 kcal Total: -28.18 -6.38 -34.56 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000704044112.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.881 kcal (2) G-P(sol) polarization free energy of solvation -28.180 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.701 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.383 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.563 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.318 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds