Wall clock time and date at job start Mon Mar 30 2020 02:22:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09003 * 115.55269 * 2 1 4 4 C 1.53078 * 117.51327 * 214.27217 * 2 1 3 5 5 C 1.53005 * 59.98485 * 252.52288 * 4 2 1 6 6 C 1.52995 * 117.49899 * 252.49983 * 5 4 2 7 7 C 1.52996 * 117.49729 * 107.49870 * 5 4 2 8 8 N 1.46505 * 109.46819 * 111.25166 * 7 5 4 9 9 C 1.46499 * 120.00339 * 270.00146 * 8 7 5 10 10 C 1.36936 * 119.99693 * 90.00242 * 8 7 5 11 11 H 1.08007 * 120.00437 * 19.39781 * 10 8 7 12 12 C 1.38810 * 119.99950 * 199.39758 * 10 8 7 13 13 N 1.31612 * 119.99986 * 15.39176 * 12 10 8 14 14 Si 1.86802 * 120.00046 * 195.39974 * 12 10 8 15 15 H 1.48499 * 109.47675 * 84.99241 * 14 12 10 16 16 H 1.48497 * 109.47268 * 205.00034 * 14 12 10 17 17 H 1.48507 * 109.47143 * 324.99274 * 14 12 10 18 18 H 1.08995 * 109.47348 * 274.33320 * 1 2 3 19 19 H 1.08997 * 109.46749 * 34.33677 * 1 2 3 20 20 H 1.09001 * 109.46764 * 154.33240 * 1 2 3 21 21 H 1.09005 * 117.49081 * 145.03757 * 4 2 1 22 22 H 1.08991 * 117.51436 * 0.02562 * 4 2 1 23 23 H 1.09001 * 109.47299 * 248.74616 * 6 5 4 24 24 H 1.08995 * 109.47769 * 8.74748 * 6 5 4 25 25 H 1.09005 * 109.47190 * 128.74989 * 6 5 4 26 26 H 1.08991 * 109.47829 * 231.25328 * 7 5 4 27 27 H 1.09008 * 109.47208 * 351.25757 * 7 5 4 28 28 H 1.08992 * 109.47104 * 95.11390 * 9 8 7 29 29 H 1.09003 * 109.47205 * 215.12032 * 9 8 7 30 30 H 1.09003 * 109.47189 * 335.11416 * 9 8 7 31 31 H 0.97006 * 120.00134 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0002 0.9834 0.0000 4 6 2.2372 -1.1219 -0.7645 5 6 2.2365 -1.1207 0.7655 6 6 3.5487 -0.7752 1.4723 7 6 1.3588 -2.1555 1.4723 8 7 2.2101 -3.1413 2.1431 9 6 2.6342 -4.3489 1.4302 10 6 2.6094 -2.9340 3.4364 11 1 2.0707 -2.2386 4.0631 12 6 3.7067 -3.6175 3.9421 13 7 4.5401 -4.2224 3.1225 14 14 4.0003 -3.6790 5.7858 15 1 3.2142 -4.7924 6.3755 16 1 5.4449 -3.8987 6.0500 17 1 3.5751 -2.3945 6.3979 18 1 -0.3634 0.0776 1.0247 19 1 -0.3633 0.8486 -0.5797 20 1 -0.3633 -0.9263 -0.4451 21 1 3.1724 -0.8762 -1.2676 22 1 1.6124 -1.8597 -1.2678 23 1 3.9373 -1.6629 1.9714 24 1 4.2746 -0.4235 0.7392 25 1 3.3691 0.0070 2.2099 26 1 0.7306 -1.6563 2.2099 27 1 0.7284 -2.6589 0.7392 28 1 3.6185 -4.1851 0.9917 29 1 2.6818 -5.1849 2.1279 30 1 1.9177 -4.5751 0.6405 31 1 5.3071 -4.6998 3.4758 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000704044112.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:22:00 Heat of formation + Delta-G solvation = 24.357991 kcal Electronic energy + Delta-G solvation = -11667.708221 eV Core-core repulsion = 9756.952686 eV Total energy + Delta-G solvation = -1910.755535 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 183.132 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.69369 -36.77909 -33.04571 -30.61102 -28.27144 -27.73110 -27.45323 -23.31024 -21.85503 -19.35889 -18.60182 -16.75543 -15.98541 -15.71534 -15.47125 -14.68673 -14.24139 -13.81456 -13.59608 -13.21387 -12.87507 -12.82578 -12.64554 -12.54450 -12.27192 -12.14864 -12.00140 -11.85386 -11.72189 -10.58040 -10.52615 -10.11052 -8.74225 -7.76126 -5.19438 1.47835 1.49295 1.56592 2.54846 2.98005 3.36977 3.74183 3.95495 4.08908 4.25304 4.49353 4.53757 4.79418 4.87935 4.94645 4.98511 5.04682 5.05165 5.23221 5.25432 5.30537 5.36485 5.44748 5.57570 5.68707 5.77072 5.92166 6.37865 7.21784 7.94771 8.37996 9.27144 Molecular weight = 183.13amu Principal moments of inertia in cm(-1) A = 0.058537 B = 0.012114 C = 0.011693 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 478.216624 B = 2310.809626 C = 2394.035754 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.143 4.143 3 H 0.100 0.900 4 C -0.172 4.172 5 C -0.149 4.149 6 C -0.105 4.105 7 C 0.187 3.813 8 N -0.611 5.611 9 C 0.181 3.819 10 C -0.244 4.244 11 H 0.067 0.933 12 C -0.053 4.053 13 N -0.936 5.936 14 Si 0.959 3.041 15 H -0.288 1.288 16 H -0.298 1.298 17 H -0.272 1.272 18 H 0.056 0.944 19 H 0.073 0.927 20 H 0.056 0.944 21 H 0.084 0.916 22 H 0.094 0.906 23 H 0.066 0.934 24 H 0.036 0.964 25 H 0.039 0.961 26 H 0.045 0.955 27 H 0.054 0.946 28 H 0.002 0.998 29 H 0.016 0.984 30 H 0.025 0.975 31 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.273 6.290 -5.452 10.423 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.162 4.162 3 H 0.119 0.881 4 C -0.209 4.209 5 C -0.151 4.151 6 C -0.163 4.163 7 C 0.061 3.939 8 N -0.334 5.334 9 C 0.036 3.964 10 C -0.374 4.374 11 H 0.085 0.915 12 C -0.247 4.247 13 N -0.583 5.583 14 Si 0.788 3.212 15 H -0.215 1.215 16 H -0.225 1.225 17 H -0.197 1.197 18 H 0.075 0.925 19 H 0.092 0.908 20 H 0.075 0.925 21 H 0.102 0.898 22 H 0.112 0.888 23 H 0.085 0.915 24 H 0.055 0.945 25 H 0.058 0.942 26 H 0.064 0.936 27 H 0.072 0.928 28 H 0.020 0.980 29 H 0.035 0.965 30 H 0.043 0.957 31 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -6.157 6.184 -5.406 10.265 hybrid contribution 0.784 -0.251 0.968 1.270 sum -5.373 5.933 -4.438 9.153 Atomic orbital electron populations 1.21301 0.91686 1.02335 1.01872 1.22506 0.96077 0.93705 1.03926 0.88147 1.23212 1.02106 1.01748 0.93813 1.22437 0.98800 1.00483 0.93416 1.21171 0.94936 1.01514 0.98637 1.20456 0.90917 0.88359 0.94132 1.44174 1.58220 1.19460 1.11504 1.20492 0.95032 0.87822 0.93067 1.19377 1.07645 1.22546 0.87849 0.91477 1.25563 0.96050 1.02004 1.01120 1.70246 1.14509 1.39923 1.33672 0.85400 0.76141 0.78017 0.81634 1.21516 1.22481 1.19663 0.92524 0.90757 0.92470 0.89777 0.88797 0.91540 0.94474 0.94234 0.93622 0.92811 0.97982 0.96500 0.95651 0.94567 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.77 9.21 71.98 0.66 -2.11 16 2 C -0.14 -4.21 6.13 -10.77 -0.07 -4.28 16 3 H 0.10 2.79 8.14 -2.39 -0.02 2.77 16 4 C -0.17 -5.48 9.47 30.62 0.29 -5.19 16 5 C -0.15 -5.61 2.57 -52.18 -0.13 -5.75 16 6 C -0.11 -4.52 9.37 71.98 0.67 -3.84 16 7 C 0.19 7.70 4.92 86.38 0.42 8.12 16 8 N -0.61 -30.77 2.19 -726.93 -1.59 -32.37 16 9 C 0.18 9.14 9.02 127.77 1.15 10.29 16 10 C -0.24 -13.33 7.72 84.03 0.65 -12.68 16 11 H 0.07 3.62 7.86 -2.91 -0.02 3.59 16 12 C -0.05 -2.95 4.99 84.86 0.42 -2.53 16 13 N -0.94 -55.44 10.63 21.65 0.23 -55.21 16 14 Si 0.96 45.58 29.58 68.60 2.03 47.61 16 15 H -0.29 -13.55 7.11 99.48 0.71 -12.84 16 16 H -0.30 -14.33 7.11 99.48 0.71 -13.63 16 17 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 18 H 0.06 1.39 8.02 -2.39 -0.02 1.37 16 19 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 20 H 0.06 1.34 7.77 -2.39 -0.02 1.33 16 21 H 0.08 2.62 8.05 -2.38 -0.02 2.60 16 22 H 0.09 2.80 7.96 -2.39 -0.02 2.78 16 23 H 0.07 3.50 5.57 -2.39 -0.01 3.49 16 24 H 0.04 1.45 7.90 -2.39 -0.02 1.43 16 25 H 0.04 1.62 8.14 -2.38 -0.02 1.60 16 26 H 0.05 1.85 7.91 -2.39 -0.02 1.84 16 27 H 0.05 2.01 7.49 -2.38 -0.02 1.99 16 28 H 0.00 0.10 7.42 -2.39 -0.02 0.09 16 29 H 0.02 0.90 7.16 -2.39 -0.02 0.88 16 30 H 0.03 1.09 7.84 -2.39 -0.02 1.07 16 31 H 0.25 14.24 8.31 -92.70 -0.77 13.47 16 Total: -1.00 -60.13 250.81 5.82 -54.32 By element: Atomic # 1 Polarization: 2.53 SS G_CDS: 1.07 Total: 3.60 kcal Atomic # 6 Polarization: -22.03 SS G_CDS: 4.08 Total: -17.96 kcal Atomic # 7 Polarization: -86.21 SS G_CDS: -1.36 Total: -87.57 kcal Atomic # 14 Polarization: 45.58 SS G_CDS: 2.03 Total: 47.61 kcal Total: -60.13 5.82 -54.32 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000704044112.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.676 kcal (2) G-P(sol) polarization free energy of solvation -60.134 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.542 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.816 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.318 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.358 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds