Wall clock time and date at job start Mon Mar 30 2020 02:22:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 115.54867 * 2 1 4 4 C 1.52999 * 117.50101 * 214.33387 * 2 1 3 5 5 C 1.52996 * 117.50050 * 145.67246 * 2 1 3 6 6 C 1.52997 * 117.49829 * 359.97202 * 5 2 1 7 7 N 1.46907 * 117.49576 * 214.98007 * 5 2 1 8 8 C 1.46911 * 110.99715 * 179.97438 * 7 5 2 9 9 C 1.52996 * 109.46826 * 180.02562 * 8 7 5 10 10 C 1.50704 * 109.46936 * 180.02562 * 9 8 7 11 11 H 1.08000 * 119.99697 * 359.97438 * 10 9 8 12 12 C 1.37878 * 119.99895 * 179.97438 * 10 9 8 13 13 N 1.31516 * 120.00308 * 359.97438 * 12 10 9 14 14 Si 1.86798 * 119.99612 * 179.97438 * 12 10 9 15 15 H 1.48503 * 109.47076 * 90.00128 * 14 12 10 16 16 H 1.48503 * 109.47221 * 209.99676 * 14 12 10 17 17 H 1.48496 * 109.47320 * 329.99796 * 14 12 10 18 18 H 1.09002 * 109.47153 * 274.41543 * 1 2 3 19 19 H 1.09001 * 109.46832 * 154.41734 * 1 2 3 20 20 H 1.09004 * 109.47261 * 34.41715 * 1 2 3 21 21 H 1.08998 * 117.49862 * 359.97438 * 4 2 1 22 22 H 1.09000 * 117.50295 * 145.02180 * 4 2 1 23 23 H 1.09005 * 109.46973 * 60.00755 * 6 5 2 24 24 H 1.09005 * 109.46914 * 180.02562 * 6 5 2 25 25 H 1.09000 * 109.47214 * 300.00291 * 6 5 2 26 26 H 1.00902 * 111.00237 * 303.94555 * 7 5 2 27 27 H 1.08996 * 109.46969 * 299.99754 * 8 7 5 28 28 H 1.08999 * 109.47230 * 59.99767 * 8 7 5 29 29 H 1.09009 * 109.47043 * 299.99779 * 9 8 7 30 30 H 1.08999 * 109.47527 * 59.99801 * 9 8 7 31 31 H 0.96991 * 120.00277 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0001 0.9834 0.0000 4 6 2.2365 -1.1207 -0.7654 5 6 2.2364 -1.1207 0.7653 6 6 1.3589 -2.1553 1.4726 7 7 3.4967 -0.7891 1.4435 8 6 4.0496 -1.9639 2.1309 9 6 5.3582 -1.5800 2.8242 10 6 5.9257 -2.7852 3.5288 11 1 5.4048 -3.7303 3.4867 12 6 7.1099 -2.6813 4.2273 13 7 7.7446 -1.5305 4.2782 14 14 7.8129 -4.1751 5.1013 15 1 8.7111 -4.9124 4.1766 16 1 8.5824 -3.7350 6.2927 17 1 6.7042 -5.0654 5.5293 18 1 -0.3633 0.0791 1.0246 19 1 -0.3633 -0.9269 -0.4438 20 1 -0.3634 0.8478 -0.5809 21 1 1.6113 -1.8582 -1.2687 22 1 3.1716 -0.8747 -1.2686 23 1 0.7292 -2.6597 0.7395 24 1 1.9923 -2.8877 1.9732 25 1 0.7299 -1.6555 2.2093 26 1 4.1654 -0.4015 0.7948 27 1 3.3358 -2.3193 2.8740 28 1 4.2409 -2.7534 1.4042 29 1 6.0723 -1.2242 2.0813 30 1 5.1665 -0.7906 3.5510 31 1 8.5775 -1.4573 4.7699 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000704269105.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:22:27 Heat of formation + Delta-G solvation = 7.225103 kcal Electronic energy + Delta-G solvation = -10971.352897 eV Core-core repulsion = 9059.854424 eV Total energy + Delta-G solvation = -1911.498473 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 183.132 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -38.69169 -34.42321 -32.43136 -29.29161 -28.17236 -27.44525 -24.02092 -21.18978 -20.28459 -18.64852 -16.42692 -15.67766 -14.85505 -14.40719 -13.75287 -13.42797 -12.99710 -12.68333 -12.32909 -12.05907 -12.01411 -11.59551 -11.19877 -11.07374 -10.89988 -10.55623 -10.36591 -9.87522 -9.57501 -9.26909 -9.10003 -8.33812 -7.58981 -5.98766 -4.01452 3.32856 3.38943 3.42374 3.94757 4.42934 4.61234 4.91653 5.07777 5.10555 5.37174 5.42009 5.73577 5.79315 5.89448 5.91228 5.98246 6.07251 6.17580 6.35586 6.37343 6.43654 6.46572 7.00518 7.52949 7.73885 7.84102 7.96285 8.09415 8.44400 9.05745 9.62279 11.12780 Molecular weight = 183.13amu Principal moments of inertia in cm(-1) A = 0.090558 B = 0.007384 C = 0.007123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 309.118209 B = 3790.893080 C = 3929.925114 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.150 4.150 3 H 0.102 0.898 4 C -0.218 4.218 5 C 0.064 3.936 6 C -0.119 4.119 7 N -0.655 5.655 8 C 0.065 3.935 9 C 0.024 3.976 10 C -0.521 4.521 11 H 0.055 0.945 12 C 0.057 3.943 13 N -0.894 5.894 14 Si 0.893 3.107 15 H -0.281 1.281 16 H -0.286 1.286 17 H -0.274 1.274 18 H 0.059 0.941 19 H 0.052 0.948 20 H 0.054 0.946 21 H 0.089 0.911 22 H 0.089 0.911 23 H 0.055 0.945 24 H 0.073 0.927 25 H 0.063 0.937 26 H 0.338 0.662 27 H 0.065 0.935 28 H 0.018 0.982 29 H 0.013 0.987 30 H 0.025 0.975 31 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.361 0.518 -7.512 13.630 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.170 4.170 3 H 0.120 0.880 4 C -0.257 4.257 5 C -0.029 4.029 6 C -0.176 4.176 7 N -0.283 5.283 8 C -0.063 4.063 9 C -0.014 4.014 10 C -0.560 4.560 11 H 0.073 0.927 12 C -0.144 4.144 13 N -0.533 5.533 14 Si 0.721 3.279 15 H -0.207 1.207 16 H -0.212 1.212 17 H -0.199 1.199 18 H 0.078 0.922 19 H 0.072 0.928 20 H 0.073 0.927 21 H 0.107 0.893 22 H 0.107 0.893 23 H 0.074 0.926 24 H 0.092 0.908 25 H 0.082 0.918 26 H 0.157 0.843 27 H 0.083 0.917 28 H 0.036 0.964 29 H 0.031 0.969 30 H 0.044 0.956 31 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -11.491 0.839 -6.835 13.397 hybrid contribution 0.901 -1.176 -0.382 1.530 sum -10.590 -0.337 -7.217 12.820 Atomic orbital electron populations 1.21288 0.93118 1.01269 1.01656 1.22509 0.94903 0.94941 1.04608 0.88020 1.23840 1.02690 1.02299 0.96912 1.21742 0.94148 0.97769 0.89228 1.21457 0.98689 0.97459 1.00041 1.60375 1.04308 1.31928 1.31710 1.22241 0.98490 0.89372 0.96185 1.19095 0.89701 0.97139 0.95458 1.21168 1.06779 0.96152 1.31885 0.92724 1.25006 0.96960 0.95904 0.96507 1.69972 1.16938 1.24046 1.42335 0.86579 0.79120 0.82971 0.79235 1.20703 1.21182 1.19861 0.92184 0.92849 0.92651 0.89292 0.89292 0.92576 0.90804 0.91849 0.84317 0.91676 0.96416 0.96870 0.95627 0.92983 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.27 9.21 37.16 0.34 -0.93 16 2 C -0.15 -2.02 6.33 -90.62 -0.57 -2.59 16 3 H 0.10 1.40 8.14 -51.93 -0.42 0.97 16 4 C -0.22 -2.96 9.53 -26.69 -0.25 -3.21 16 5 C 0.06 1.00 2.92 -131.56 -0.38 0.62 16 6 C -0.12 -1.71 8.51 37.16 0.32 -1.39 16 7 N -0.65 -12.36 6.78 -99.92 -0.68 -13.04 16 8 C 0.06 1.40 4.64 -3.82 -0.02 1.38 16 9 C 0.02 0.63 5.23 -27.88 -0.15 0.48 16 10 C -0.52 -14.98 9.11 -34.44 -0.31 -15.29 16 11 H 0.05 1.52 7.74 -52.49 -0.41 1.11 16 12 C 0.06 1.67 5.46 -17.82 -0.10 1.58 16 13 N -0.89 -27.25 13.29 55.43 0.74 -26.51 16 14 Si 0.89 21.83 29.54 -169.99 -5.02 16.81 16 15 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 16 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 17 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 18 H 0.06 0.66 8.02 -51.93 -0.42 0.24 16 19 H 0.05 0.54 7.77 -51.93 -0.40 0.14 16 20 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 21 H 0.09 1.10 7.96 -51.93 -0.41 0.69 16 22 H 0.09 1.21 8.09 -51.93 -0.42 0.79 16 23 H 0.06 0.68 7.77 -51.93 -0.40 0.28 16 24 H 0.07 1.16 5.60 -51.93 -0.29 0.86 16 25 H 0.06 0.87 8.02 -51.93 -0.42 0.45 16 26 H 0.34 6.20 8.52 -39.29 -0.33 5.86 16 27 H 0.06 1.40 6.35 -51.93 -0.33 1.07 16 28 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.01 0.36 8.14 -51.92 -0.42 -0.06 16 30 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 LS Contribution 256.73 15.07 3.87 3.87 Total: -1.00 -30.02 256.73 -7.30 -37.33 By element: Atomic # 1 Polarization: 5.99 SS G_CDS: -5.08 Total: 0.91 kcal Atomic # 6 Polarization: -18.24 SS G_CDS: -1.13 Total: -19.37 kcal Atomic # 7 Polarization: -39.61 SS G_CDS: 0.06 Total: -39.55 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.81 kcal Total LS contribution 3.87 Total: 3.87 kcal Total: -30.02 -7.30 -37.33 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000704269105.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.552 kcal (2) G-P(sol) polarization free energy of solvation -30.023 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.530 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.305 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.327 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.225 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds