Wall clock time and date at job start Mon Mar 30 2020 02:22:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 115.54867 * 2 1 4 4 C 1.52999 * 117.50101 * 214.33387 * 2 1 3 5 5 C 1.52996 * 117.50050 * 145.67246 * 2 1 3 6 6 C 1.52997 * 117.49829 * 359.97202 * 5 2 1 7 7 N 1.46907 * 117.49576 * 214.98007 * 5 2 1 8 8 C 1.46911 * 110.99715 * 179.97438 * 7 5 2 9 9 C 1.52996 * 109.46826 * 180.02562 * 8 7 5 10 10 C 1.50704 * 109.46936 * 180.02562 * 9 8 7 11 11 H 1.08000 * 119.99697 * 359.97438 * 10 9 8 12 12 C 1.37878 * 119.99895 * 179.97438 * 10 9 8 13 13 N 1.31516 * 120.00308 * 359.97438 * 12 10 9 14 14 Si 1.86798 * 119.99612 * 179.97438 * 12 10 9 15 15 H 1.48503 * 109.47076 * 90.00128 * 14 12 10 16 16 H 1.48503 * 109.47221 * 209.99676 * 14 12 10 17 17 H 1.48496 * 109.47320 * 329.99796 * 14 12 10 18 18 H 1.09002 * 109.47153 * 274.41543 * 1 2 3 19 19 H 1.09001 * 109.46832 * 154.41734 * 1 2 3 20 20 H 1.09004 * 109.47261 * 34.41715 * 1 2 3 21 21 H 1.08998 * 117.49862 * 359.97438 * 4 2 1 22 22 H 1.09000 * 117.50295 * 145.02180 * 4 2 1 23 23 H 1.09005 * 109.46973 * 60.00755 * 6 5 2 24 24 H 1.09005 * 109.46914 * 180.02562 * 6 5 2 25 25 H 1.09000 * 109.47214 * 300.00291 * 6 5 2 26 26 H 1.00902 * 111.00237 * 303.94555 * 7 5 2 27 27 H 1.08996 * 109.46969 * 299.99754 * 8 7 5 28 28 H 1.08999 * 109.47230 * 59.99767 * 8 7 5 29 29 H 1.09009 * 109.47043 * 299.99779 * 9 8 7 30 30 H 1.08999 * 109.47527 * 59.99801 * 9 8 7 31 31 H 0.96991 * 120.00277 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0001 0.9834 0.0000 4 6 2.2365 -1.1207 -0.7654 5 6 2.2364 -1.1207 0.7653 6 6 1.3589 -2.1553 1.4726 7 7 3.4967 -0.7891 1.4435 8 6 4.0496 -1.9639 2.1309 9 6 5.3582 -1.5800 2.8242 10 6 5.9257 -2.7852 3.5288 11 1 5.4048 -3.7303 3.4867 12 6 7.1099 -2.6813 4.2273 13 7 7.7446 -1.5305 4.2782 14 14 7.8129 -4.1751 5.1013 15 1 8.7111 -4.9124 4.1766 16 1 8.5824 -3.7350 6.2927 17 1 6.7042 -5.0654 5.5293 18 1 -0.3633 0.0791 1.0246 19 1 -0.3633 -0.9269 -0.4438 20 1 -0.3634 0.8478 -0.5809 21 1 1.6113 -1.8582 -1.2687 22 1 3.1716 -0.8747 -1.2686 23 1 0.7292 -2.6597 0.7395 24 1 1.9923 -2.8877 1.9732 25 1 0.7299 -1.6555 2.2093 26 1 4.1654 -0.4015 0.7948 27 1 3.3358 -2.3193 2.8740 28 1 4.2409 -2.7534 1.4042 29 1 6.0723 -1.2242 2.0813 30 1 5.1665 -0.7906 3.5510 31 1 8.5775 -1.4573 4.7699 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000704269105.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:22:27 Heat of formation + Delta-G solvation = -12.262528 kcal Electronic energy + Delta-G solvation = -10972.197944 eV Core-core repulsion = 9059.854424 eV Total energy + Delta-G solvation = -1912.343520 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 183.132 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.90636 -36.21228 -34.38995 -30.95812 -29.41192 -28.66118 -26.01227 -22.71585 -21.78736 -19.87784 -18.50326 -17.13987 -16.44546 -16.27533 -15.19921 -14.61528 -14.47723 -14.07044 -13.95134 -13.45654 -13.18654 -12.99324 -12.77286 -12.63634 -12.46027 -12.24974 -12.08098 -11.37302 -11.34974 -11.18231 -10.64748 -10.54983 -9.01093 -8.21278 -6.33333 1.40266 1.42217 1.53500 2.39939 2.80126 3.12109 3.28556 3.80724 3.93204 4.00887 4.45524 4.51893 4.58277 4.66154 4.83598 4.86577 4.88968 4.98576 5.03252 5.08815 5.19254 5.29226 5.42822 5.47795 5.64544 5.78674 6.14411 6.29112 6.49745 6.83698 7.36196 8.91154 Molecular weight = 183.13amu Principal moments of inertia in cm(-1) A = 0.090558 B = 0.007384 C = 0.007123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 309.118209 B = 3790.893080 C = 3929.925114 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.139 4.139 3 H 0.095 0.905 4 C -0.206 4.206 5 C 0.032 3.968 6 C -0.116 4.116 7 N -0.665 5.665 8 C 0.087 3.913 9 C 0.030 3.970 10 C -0.545 4.545 11 H 0.062 0.938 12 C 0.000 4.000 13 N -0.933 5.933 14 Si 0.969 3.031 15 H -0.271 1.271 16 H -0.281 1.281 17 H -0.262 1.262 18 H 0.059 0.941 19 H 0.065 0.935 20 H 0.070 0.930 21 H 0.108 0.892 22 H 0.085 0.915 23 H 0.081 0.919 24 H 0.055 0.945 25 H 0.065 0.935 26 H 0.338 0.662 27 H 0.066 0.934 28 H 0.018 0.982 29 H -0.011 1.011 30 H -0.007 1.007 31 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.551 -0.590 -8.050 14.922 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.158 4.158 3 H 0.113 0.887 4 C -0.245 4.245 5 C -0.060 4.060 6 C -0.173 4.173 7 N -0.294 5.294 8 C -0.041 4.041 9 C -0.008 4.008 10 C -0.583 4.583 11 H 0.080 0.920 12 C -0.198 4.198 13 N -0.573 5.573 14 Si 0.793 3.207 15 H -0.197 1.197 16 H -0.207 1.207 17 H -0.186 1.186 18 H 0.078 0.922 19 H 0.084 0.916 20 H 0.089 0.911 21 H 0.126 0.874 22 H 0.104 0.896 23 H 0.099 0.901 24 H 0.074 0.926 25 H 0.084 0.916 26 H 0.156 0.844 27 H 0.085 0.915 28 H 0.036 0.964 29 H 0.007 0.993 30 H 0.012 0.988 31 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -12.707 -0.267 -7.390 14.702 hybrid contribution 1.252 -0.759 -0.260 1.487 sum -11.455 -1.027 -7.650 13.813 Atomic orbital electron populations 1.21313 0.90917 1.02677 1.02149 1.22611 0.96510 0.94103 1.02625 0.88671 1.23873 1.02937 1.02613 0.95121 1.21958 0.93144 1.00215 0.90650 1.21445 0.98466 0.96787 1.00615 1.60306 1.05506 1.30798 1.32794 1.21820 0.95985 0.90254 0.96091 1.18956 0.91777 0.95728 0.94330 1.21600 1.07398 0.96956 1.32359 0.92007 1.26009 0.97306 0.99283 0.97215 1.70112 1.17477 1.26534 1.43189 0.85384 0.78518 0.78820 0.77934 1.19664 1.20669 1.18592 0.92173 0.91630 0.91071 0.87394 0.89602 0.90054 0.92613 0.91569 0.84427 0.91533 0.96390 0.99265 0.98812 0.92697 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.14 9.21 71.98 0.66 -1.48 16 2 C -0.14 -3.45 6.33 -10.80 -0.07 -3.52 16 3 H 0.10 2.48 8.14 -2.39 -0.02 2.46 16 4 C -0.21 -5.15 9.53 30.62 0.29 -4.86 16 5 C 0.03 0.97 2.92 3.55 0.01 0.98 16 6 C -0.12 -3.12 8.51 71.98 0.61 -2.51 16 7 N -0.67 -25.29 6.78 -470.05 -3.18 -28.47 16 8 C 0.09 3.81 4.64 86.30 0.40 4.21 16 9 C 0.03 1.63 5.23 29.85 0.16 1.79 16 10 C -0.54 -31.74 9.11 25.60 0.23 -31.50 16 11 H 0.06 3.43 7.74 -2.91 -0.02 3.40 16 12 C 0.00 -0.02 5.46 84.65 0.46 0.45 16 13 N -0.93 -57.94 13.29 21.45 0.28 -57.65 16 14 Si 0.97 44.69 29.54 68.60 2.03 46.72 16 15 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 16 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 17 H -0.26 -11.48 7.11 99.48 0.71 -10.77 16 18 H 0.06 1.15 8.02 -2.39 -0.02 1.13 16 19 H 0.06 1.09 7.77 -2.39 -0.02 1.07 16 20 H 0.07 1.13 8.14 -2.38 -0.02 1.11 16 21 H 0.11 2.30 7.96 -2.39 -0.02 2.28 16 22 H 0.09 2.20 8.09 -2.39 -0.02 2.18 16 23 H 0.08 1.74 7.77 -2.38 -0.02 1.72 16 24 H 0.05 1.69 5.60 -2.38 -0.01 1.68 16 25 H 0.07 1.71 8.02 -2.39 -0.02 1.69 16 26 H 0.34 12.61 8.52 -89.69 -0.76 11.84 16 27 H 0.07 2.88 6.35 -2.39 -0.02 2.87 16 28 H 0.02 0.77 8.14 -2.39 -0.02 0.76 16 29 H -0.01 -0.65 8.14 -2.38 -0.02 -0.67 16 30 H -0.01 -0.40 8.14 -2.39 -0.02 -0.42 16 31 H 0.26 15.34 8.31 -92.71 -0.77 14.56 16 Total: -1.00 -64.43 256.73 2.21 -62.22 By element: Atomic # 1 Polarization: 13.31 SS G_CDS: 0.32 Total: 13.63 kcal Atomic # 6 Polarization: -39.20 SS G_CDS: 2.76 Total: -36.44 kcal Atomic # 7 Polarization: -83.23 SS G_CDS: -2.90 Total: -86.13 kcal Atomic # 14 Polarization: 44.69 SS G_CDS: 2.03 Total: 46.72 kcal Total: -64.43 2.21 -62.22 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000704269105.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.959 kcal (2) G-P(sol) polarization free energy of solvation -64.434 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.212 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.222 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.263 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds