Wall clock time and date at job start Mon Mar 30 2020 02:12:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47060 * 2 1 4 4 H 1.09006 * 109.46372 * 304.99394 * 3 2 1 5 5 N 1.46845 * 109.46333 * 64.97931 * 3 2 1 6 6 C 1.46850 * 111.19500 * 181.75758 * 5 3 2 7 7 C 1.53035 * 109.52496 * 298.25631 * 6 5 3 8 8 C 1.53117 * 109.27794 * 59.18084 * 7 6 5 9 9 C 1.53042 * 109.45778 * 185.02316 * 3 2 1 10 10 H 1.08992 * 109.50698 * 60.86665 * 9 3 2 11 11 C 1.50700 * 109.50239 * 300.74011 * 9 3 2 12 12 H 1.07998 * 120.00156 * 0.02562 * 11 9 3 13 13 C 1.37876 * 119.99906 * 180.02562 * 11 9 3 14 14 N 1.31511 * 119.99964 * 359.97438 * 13 11 9 15 15 Si 1.86804 * 119.99962 * 180.02562 * 13 11 9 16 16 H 1.48501 * 109.46883 * 359.97438 * 15 13 11 17 17 H 1.48495 * 109.47100 * 119.99656 * 15 13 11 18 18 H 1.48505 * 109.46895 * 239.99537 * 15 13 11 19 19 H 1.08996 * 109.47853 * 180.02562 * 1 2 3 20 20 H 1.09002 * 109.47153 * 300.00319 * 1 2 3 21 21 H 1.08998 * 109.47533 * 59.99948 * 1 2 3 22 22 H 1.09002 * 109.47153 * 239.99681 * 2 1 3 23 23 H 1.09001 * 109.46832 * 119.99872 * 2 1 3 24 24 H 1.00892 * 111.00297 * 57.65983 * 5 3 2 25 25 H 1.09001 * 109.46393 * 58.27141 * 6 5 3 26 26 H 1.09004 * 109.46365 * 178.24935 * 6 5 3 27 27 H 1.09001 * 109.50826 * 179.12409 * 7 6 5 28 28 H 1.09004 * 109.50309 * 299.20641 * 7 6 5 29 29 H 1.09000 * 109.52532 * 62.25347 * 8 7 6 30 30 H 1.09005 * 109.52385 * 182.38004 * 8 7 6 31 31 H 0.97004 * 120.00104 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9814 -0.8420 5 7 1.6510 2.0990 1.2546 6 6 2.0864 3.5013 1.2772 7 6 3.6128 3.5644 1.1888 8 6 4.0726 2.8886 -0.1060 9 6 3.5652 1.4440 -0.1263 10 1 3.8531 0.9706 -1.0649 11 6 4.1663 0.6831 1.0272 12 1 3.5250 0.2418 1.7758 13 6 5.5350 0.5502 1.1269 14 7 6.3159 1.0871 0.2150 15 14 6.2802 -0.3936 2.5564 16 1 5.1951 -0.8958 3.4372 17 1 7.0666 -1.5406 2.0359 18 1 7.1710 0.5059 3.3327 19 1 -0.3635 -1.0276 0.0005 20 1 -0.3633 0.5139 0.8900 21 1 -0.3634 0.5138 -0.8899 22 1 1.8933 -0.5139 -0.8900 23 1 1.8933 -0.5138 0.8900 24 1 2.0097 1.5961 2.0523 25 1 1.6513 4.0304 0.4294 26 1 1.7568 3.9690 2.2051 27 1 3.9348 4.6058 1.1900 28 1 4.0486 3.0478 2.0441 29 1 3.6686 3.4289 -0.9622 30 1 5.1616 2.8938 -0.1528 31 1 7.2789 0.9933 0.2849 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000710029352.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:12:41 Heat of formation + Delta-G solvation = -41.515343 kcal Electronic energy + Delta-G solvation = -11924.179080 eV Core-core repulsion = 10010.567063 eV Total energy + Delta-G solvation = -1913.612017 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 183.132 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -39.94814 -34.86419 -34.44519 -31.72633 -30.27006 -26.88633 -24.88535 -23.38829 -21.49014 -20.93917 -17.88363 -16.74442 -16.20881 -15.88483 -15.22637 -14.90258 -14.31023 -13.98924 -13.61370 -13.44811 -12.90049 -12.77510 -12.60824 -12.36251 -12.05812 -11.96418 -11.63219 -11.52377 -11.33703 -10.96595 -10.58732 -10.38025 -8.90091 -8.04547 -6.16115 1.37890 1.41720 1.50922 2.43369 3.22595 3.70078 4.18178 4.32252 4.45756 4.56565 4.61014 4.67631 4.89578 4.93296 4.97570 5.09280 5.18653 5.25345 5.35027 5.47044 5.52026 5.60115 5.66828 5.69271 5.86272 6.08505 6.35775 6.50328 6.77567 6.94489 7.50287 8.99616 Molecular weight = 183.13amu Principal moments of inertia in cm(-1) A = 0.037704 B = 0.016882 C = 0.014102 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 742.455002 B = 1658.134773 C = 1985.056218 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.103 4.103 3 C 0.101 3.899 4 H 0.053 0.947 5 N -0.668 5.668 6 C 0.067 3.933 7 C -0.133 4.133 8 C -0.110 4.110 9 C 0.013 3.987 10 H -0.014 1.014 11 C -0.498 4.498 12 H 0.060 0.940 13 C 0.011 3.989 14 N -0.921 5.921 15 Si 0.944 3.056 16 H -0.262 1.262 17 H -0.288 1.288 18 H -0.287 1.287 19 H 0.054 0.946 20 H 0.060 0.940 21 H 0.048 0.952 22 H 0.045 0.955 23 H 0.052 0.948 24 H 0.337 0.663 25 H 0.065 0.935 26 H 0.082 0.918 27 H 0.051 0.949 28 H 0.044 0.956 29 H 0.020 0.980 30 H 0.054 0.946 31 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.820 1.434 2.093 8.222 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.141 4.141 3 C -0.009 4.009 4 H 0.072 0.928 5 N -0.297 5.297 6 C -0.063 4.063 7 C -0.172 4.172 8 C -0.148 4.148 9 C -0.007 4.007 10 H 0.004 0.996 11 C -0.537 4.537 12 H 0.078 0.922 13 C -0.187 4.187 14 N -0.562 5.562 15 Si 0.771 3.229 16 H -0.186 1.186 17 H -0.214 1.214 18 H -0.213 1.213 19 H 0.073 0.927 20 H 0.079 0.921 21 H 0.068 0.932 22 H 0.064 0.936 23 H 0.071 0.929 24 H 0.154 0.846 25 H 0.083 0.917 26 H 0.100 0.900 27 H 0.070 0.930 28 H 0.063 0.937 29 H 0.039 0.961 30 H 0.072 0.928 31 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -8.307 1.595 1.836 8.656 hybrid contribution 2.164 -0.566 0.474 2.286 sum -6.144 1.029 2.310 6.644 Atomic orbital electron populations 1.21615 0.94418 1.00939 1.01931 1.21379 0.96338 0.95466 1.00922 1.21432 0.93280 0.94433 0.91765 0.92845 1.60961 1.61376 1.02807 1.04572 1.21928 0.92077 0.90506 1.01825 1.21979 0.98282 0.98644 0.98300 1.21459 1.01590 0.96797 0.94984 1.19347 0.93177 0.92885 0.95246 0.99597 1.21335 0.91278 1.32099 1.08951 0.92225 1.25664 0.98152 0.96729 0.98139 1.70041 1.03825 1.46341 1.36004 0.85710 0.78613 0.78391 0.80192 1.18630 1.21400 1.21344 0.92690 0.92056 0.93246 0.93587 0.92900 0.84557 0.91685 0.89957 0.93035 0.93706 0.96124 0.92756 0.93535 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.90 9.80 71.98 0.71 -3.19 16 2 C -0.10 -3.82 5.19 30.59 0.16 -3.66 16 3 C 0.10 4.08 2.16 44.94 0.10 4.18 16 4 H 0.05 2.13 8.14 -2.38 -0.02 2.11 16 5 N -0.67 -24.58 5.91 -491.66 -2.90 -27.49 16 6 C 0.07 2.30 6.55 86.32 0.57 2.86 16 7 C -0.13 -5.42 5.82 30.65 0.18 -5.24 16 8 C -0.11 -5.27 5.32 30.68 0.16 -5.10 16 9 C 0.01 0.65 2.14 -11.48 -0.02 0.63 16 10 H -0.01 -0.80 8.14 -2.39 -0.02 -0.82 16 11 C -0.50 -25.92 6.16 25.60 0.16 -25.76 16 12 H 0.06 3.02 5.81 -2.91 -0.02 3.00 16 13 C 0.01 0.59 5.30 84.65 0.45 1.04 16 14 N -0.92 -53.46 11.32 21.45 0.24 -53.22 16 15 Si 0.94 43.28 29.54 68.60 2.03 45.31 16 16 H -0.26 -11.46 7.11 99.48 0.71 -10.76 16 17 H -0.29 -13.22 7.11 99.48 0.71 -12.51 16 18 H -0.29 -13.13 7.11 99.48 0.71 -12.43 16 19 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 20 H 0.06 1.81 7.75 -2.39 -0.02 1.79 16 21 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 22 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 23 H 0.05 2.08 6.75 -2.39 -0.02 2.07 16 24 H 0.34 13.02 7.31 -89.70 -0.66 12.36 16 25 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16 26 H 0.08 2.43 8.14 -2.39 -0.02 2.41 16 27 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 28 H 0.04 2.02 7.36 -2.38 -0.02 2.00 16 29 H 0.02 0.91 8.14 -2.39 -0.02 0.89 16 30 H 0.05 2.99 6.04 -2.38 -0.01 2.97 16 31 H 0.26 14.26 8.31 -92.70 -0.77 13.49 16 Total: -1.00 -56.81 239.15 2.25 -54.56 By element: Atomic # 1 Polarization: 14.66 SS G_CDS: 0.44 Total: 15.09 kcal Atomic # 6 Polarization: -36.71 SS G_CDS: 2.45 Total: -34.25 kcal Atomic # 7 Polarization: -78.04 SS G_CDS: -2.66 Total: -80.71 kcal Atomic # 14 Polarization: 43.28 SS G_CDS: 2.03 Total: 45.31 kcal Total: -56.81 2.25 -54.56 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000710029352.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.046 kcal (2) G-P(sol) polarization free energy of solvation -56.812 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.766 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.251 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.561 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.515 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds