Wall clock time and date at job start Mon Mar 30 2020 01:43:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 115.56027 * 2 1 4 4 C 1.52995 * 117.50042 * 145.69207 * 2 1 3 5 5 H 1.09004 * 117.50083 * 359.97221 * 4 2 1 6 6 C 1.50700 * 117.49808 * 214.97969 * 4 2 1 7 7 O 1.20826 * 119.99974 * 323.55260 * 6 4 2 8 8 O 1.34232 * 120.00103 * 143.56045 * 6 4 2 9 9 C 1.53003 * 60.03403 * 107.47609 * 4 2 1 10 10 H 1.09004 * 117.49771 * 252.49990 * 9 4 2 11 11 C 1.50695 * 117.49794 * 107.49777 * 9 4 2 12 12 H 1.07993 * 120.00549 * 305.13047 * 11 9 4 13 13 C 1.37884 * 119.99681 * 125.12339 * 11 9 4 14 14 N 1.31513 * 120.00117 * 0.02562 * 13 11 9 15 15 Si 1.86797 * 119.99861 * 179.97438 * 13 11 9 16 16 H 1.48501 * 109.47209 * 90.00319 * 15 13 11 17 17 H 1.48507 * 109.47066 * 210.00210 * 15 13 11 18 18 H 1.48505 * 109.47468 * 330.00468 * 15 13 11 19 19 H 1.09001 * 109.47248 * 325.69900 * 1 2 3 20 20 H 1.09000 * 109.47087 * 85.70375 * 1 2 3 21 21 H 1.09007 * 109.47312 * 205.70141 * 1 2 3 22 22 H 1.08999 * 109.46650 * 211.71506 * 3 2 1 23 23 H 1.09004 * 109.47009 * 331.71256 * 3 2 1 24 24 H 1.08994 * 109.47296 * 91.71011 * 3 2 1 25 25 H 0.96699 * 116.99701 * 179.97438 * 8 6 4 26 26 H 0.96999 * 120.00502 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1901 1.3803 0.0000 4 6 2.2365 -1.1210 0.7649 5 1 1.6113 -1.8583 1.2686 6 6 3.5293 -0.7811 1.4607 7 8 4.3013 -0.0019 0.9541 8 8 3.8232 -1.3441 2.6433 9 6 2.2366 -1.1218 -0.7651 10 1 1.6115 -1.8597 -1.2681 11 6 3.5296 -0.7827 -1.4609 12 1 4.0389 0.1420 -1.2334 13 6 4.0624 -1.6531 -2.3881 14 7 3.4420 -2.7790 -2.6655 15 14 5.6648 -1.2324 -3.2512 16 1 6.8057 -1.7648 -2.4638 17 1 5.6717 -1.8405 -4.6060 18 1 5.7907 0.2425 -3.3699 19 1 -0.3634 0.8489 0.5791 20 1 -0.3633 0.0770 -1.0248 21 1 -0.3634 -0.9260 0.4457 22 1 3.1355 1.3308 -0.5402 23 1 1.5305 2.0985 -0.4870 24 1 2.3746 1.6948 1.0271 25 1 4.6640 -1.0954 3.0510 26 1 3.8170 -3.3916 -3.3175 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000005482342.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:43:27 Heat of formation + Delta-G solvation = -78.091759 kcal Electronic energy + Delta-G solvation = -11494.940987 eV Core-core repulsion = 9346.191140 eV Total energy + Delta-G solvation = -2148.749846 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 184.089 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -39.52237 -36.97443 -34.83816 -32.44746 -28.65782 -26.88164 -25.72019 -23.18110 -19.51731 -18.05836 -17.20663 -16.43731 -14.88761 -14.69252 -14.48097 -13.42519 -12.94484 -12.84217 -12.13000 -11.78444 -11.49398 -11.26253 -10.94956 -10.84169 -10.75630 -10.56334 -10.00939 -9.42911 -9.37003 -8.81444 -8.54778 -8.25928 -6.16064 -4.09664 3.19900 3.33184 3.36465 3.41997 4.01640 4.38797 4.88334 5.35795 5.79760 5.90266 6.06955 6.28002 6.33073 6.42389 6.46731 6.55333 6.79694 6.91630 6.96741 7.27235 7.49323 7.51704 7.90530 8.35234 8.96295 9.05631 9.49063 10.93995 Molecular weight = 184.09amu Principal moments of inertia in cm(-1) A = 0.036451 B = 0.016789 C = 0.014300 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 767.970007 B = 1667.325982 C = 1957.545749 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.138 4.138 3 C -0.108 4.108 4 C -0.209 4.209 5 H 0.099 0.901 6 C 0.507 3.493 7 O -0.502 6.502 8 O -0.535 6.535 9 C 0.073 3.927 10 H 0.098 0.902 11 C -0.479 4.479 12 H 0.084 0.916 13 C 0.065 3.935 14 N -0.886 5.886 15 Si 0.901 3.099 16 H -0.280 1.280 17 H -0.286 1.286 18 H -0.270 1.270 19 H 0.045 0.955 20 H 0.057 0.943 21 H 0.049 0.951 22 H 0.087 0.913 23 H 0.041 0.959 24 H 0.032 0.968 25 H 0.392 0.608 26 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.235 3.173 5.259 6.536 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.138 4.138 3 C -0.164 4.164 4 C -0.229 4.229 5 H 0.117 0.883 6 C 0.351 3.649 7 O -0.389 6.389 8 O -0.346 6.346 9 C 0.054 3.946 10 H 0.116 0.884 11 C -0.515 4.515 12 H 0.102 0.898 13 C -0.139 4.139 14 N -0.523 5.523 15 Si 0.728 3.272 16 H -0.206 1.206 17 H -0.212 1.212 18 H -0.194 1.194 19 H 0.064 0.936 20 H 0.076 0.924 21 H 0.068 0.932 22 H 0.106 0.894 23 H 0.060 0.940 24 H 0.051 0.949 25 H 0.249 0.751 26 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -2.390 3.118 4.787 6.192 hybrid contribution 1.388 0.085 0.120 1.396 sum -1.001 3.202 4.906 5.944 Atomic orbital electron populations 1.21263 0.93289 1.00513 1.01103 1.21577 0.92848 0.91841 1.07557 1.21323 1.01895 0.93200 1.00030 1.22374 0.94260 1.04872 1.01416 0.88333 1.22526 0.87975 0.77071 0.77279 1.90599 1.50140 1.34189 1.63958 1.84565 1.43829 1.69348 1.36901 1.20358 0.97060 0.93460 0.83690 0.88382 1.21004 1.04736 1.05832 1.19944 0.89775 1.25136 0.97660 0.94779 0.96283 1.69949 1.39028 1.09940 1.33375 0.86443 0.83308 0.78992 0.78435 1.20591 1.21170 1.19444 0.93563 0.92383 0.93172 0.89412 0.93978 0.94884 0.75129 0.92631 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.81 9.78 37.16 0.36 -1.45 15 2 C -0.14 -2.92 2.70 -154.47 -0.42 -3.33 15 3 C -0.11 -2.23 8.15 37.16 0.30 -1.93 15 4 C -0.21 -4.70 5.94 -91.77 -0.55 -5.24 15 5 H 0.10 2.05 8.05 -51.93 -0.42 1.63 15 6 C 0.51 11.41 7.46 36.01 0.27 11.67 15 7 O -0.50 -12.35 12.94 -18.75 -0.24 -12.59 15 8 O -0.53 -9.94 13.42 -39.26 -0.53 -10.47 15 9 C 0.07 1.84 5.47 -91.73 -0.50 1.34 15 10 H 0.10 2.59 7.58 -51.93 -0.39 2.20 15 11 C -0.48 -13.23 7.04 -34.44 -0.24 -13.47 15 12 H 0.08 2.38 4.63 -52.49 -0.24 2.14 15 13 C 0.07 1.81 5.46 -17.82 -0.10 1.72 15 14 N -0.89 -25.41 12.94 55.43 0.72 -24.70 15 15 Si 0.90 21.78 29.54 -169.99 -5.02 16.76 15 16 H -0.28 -6.81 7.11 56.52 0.40 -6.41 15 17 H -0.29 -6.74 7.11 56.52 0.40 -6.34 15 18 H -0.27 -6.45 7.11 56.52 0.40 -6.05 15 19 H 0.05 0.71 8.09 -51.93 -0.42 0.29 15 20 H 0.06 0.97 8.14 -51.93 -0.42 0.55 15 21 H 0.05 0.81 7.90 -51.93 -0.41 0.40 15 22 H 0.09 2.06 4.65 -51.93 -0.24 1.82 15 23 H 0.04 0.76 8.03 -51.93 -0.42 0.35 15 24 H 0.03 0.65 7.89 -51.93 -0.41 0.24 15 25 H 0.39 5.34 9.10 45.56 0.41 5.75 15 26 H 0.26 7.16 8.31 -40.82 -0.34 6.82 15 LS Contribution 224.55 15.07 3.38 3.38 Total: -1.00 -30.26 224.55 -4.65 -34.91 By element: Atomic # 1 Polarization: 5.50 SS G_CDS: -2.10 Total: 3.40 kcal Atomic # 6 Polarization: -9.84 SS G_CDS: -0.87 Total: -10.70 kcal Atomic # 7 Polarization: -25.41 SS G_CDS: 0.72 Total: -24.70 kcal Atomic # 8 Polarization: -22.28 SS G_CDS: -0.77 Total: -23.05 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal Total LS contribution 3.38 Total: 3.38 kcal Total: -30.26 -4.65 -34.91 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000005482342.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.177 kcal (2) G-P(sol) polarization free energy of solvation -30.261 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.438 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.654 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.914 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds