Wall clock time and date at job start Mon Mar 30 2020 01:43:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 115.56027 * 2 1 4 4 C 1.52995 * 117.50042 * 145.69207 * 2 1 3 5 5 H 1.09004 * 117.50083 * 359.97221 * 4 2 1 6 6 C 1.50700 * 117.49808 * 214.97969 * 4 2 1 7 7 O 1.20826 * 119.99974 * 323.55260 * 6 4 2 8 8 O 1.34232 * 120.00103 * 143.56045 * 6 4 2 9 9 C 1.53003 * 60.03403 * 107.47609 * 4 2 1 10 10 H 1.09004 * 117.49771 * 252.49990 * 9 4 2 11 11 C 1.50695 * 117.49794 * 107.49777 * 9 4 2 12 12 H 1.07993 * 120.00549 * 305.13047 * 11 9 4 13 13 C 1.37884 * 119.99681 * 125.12339 * 11 9 4 14 14 N 1.31513 * 120.00117 * 0.02562 * 13 11 9 15 15 Si 1.86797 * 119.99861 * 179.97438 * 13 11 9 16 16 H 1.48501 * 109.47209 * 90.00319 * 15 13 11 17 17 H 1.48507 * 109.47066 * 210.00210 * 15 13 11 18 18 H 1.48505 * 109.47468 * 330.00468 * 15 13 11 19 19 H 1.09001 * 109.47248 * 325.69900 * 1 2 3 20 20 H 1.09000 * 109.47087 * 85.70375 * 1 2 3 21 21 H 1.09007 * 109.47312 * 205.70141 * 1 2 3 22 22 H 1.08999 * 109.46650 * 211.71506 * 3 2 1 23 23 H 1.09004 * 109.47009 * 331.71256 * 3 2 1 24 24 H 1.08994 * 109.47296 * 91.71011 * 3 2 1 25 25 H 0.96699 * 116.99701 * 179.97438 * 8 6 4 26 26 H 0.96999 * 120.00502 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1901 1.3803 0.0000 4 6 2.2365 -1.1210 0.7649 5 1 1.6113 -1.8583 1.2686 6 6 3.5293 -0.7811 1.4607 7 8 4.3013 -0.0019 0.9541 8 8 3.8232 -1.3441 2.6433 9 6 2.2366 -1.1218 -0.7651 10 1 1.6115 -1.8597 -1.2681 11 6 3.5296 -0.7827 -1.4609 12 1 4.0389 0.1420 -1.2334 13 6 4.0624 -1.6531 -2.3881 14 7 3.4420 -2.7790 -2.6655 15 14 5.6648 -1.2324 -3.2512 16 1 6.8057 -1.7648 -2.4638 17 1 5.6717 -1.8405 -4.6060 18 1 5.7907 0.2425 -3.3699 19 1 -0.3634 0.8489 0.5791 20 1 -0.3633 0.0770 -1.0248 21 1 -0.3634 -0.9260 0.4457 22 1 3.1355 1.3308 -0.5402 23 1 1.5305 2.0985 -0.4870 24 1 2.3746 1.6948 1.0271 25 1 4.6640 -1.0954 3.0510 26 1 3.8170 -3.3916 -3.3175 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000005482342.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:43:27 Heat of formation + Delta-G solvation = -98.004543 kcal Electronic energy + Delta-G solvation = -11495.804470 eV Core-core repulsion = 9346.191140 eV Total energy + Delta-G solvation = -2149.613329 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 184.089 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -41.26953 -38.67497 -36.55261 -34.49057 -30.32010 -28.53746 -27.61357 -24.99129 -21.33764 -19.78916 -18.93905 -18.34655 -16.75852 -16.52879 -16.22921 -15.19045 -14.65478 -14.44569 -13.87707 -13.45653 -13.11972 -12.97414 -12.78052 -12.67371 -12.46567 -12.24024 -11.91699 -11.29758 -11.16438 -10.77670 -10.44219 -10.10562 -8.23383 -6.20694 1.33888 1.38626 1.49177 1.51945 2.36627 2.45720 2.94556 3.50224 4.23817 4.26637 4.37516 4.52033 4.72978 4.87260 4.94401 5.11310 5.20093 5.27368 5.39882 5.53898 5.62772 5.87540 5.88382 6.35235 6.90983 7.35281 7.40409 8.87531 Molecular weight = 184.09amu Principal moments of inertia in cm(-1) A = 0.036451 B = 0.016789 C = 0.014300 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 767.970007 B = 1667.325982 C = 1957.545749 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C -0.116 4.116 3 C -0.106 4.106 4 C -0.210 4.210 5 H 0.116 0.884 6 C 0.507 3.493 7 O -0.529 6.529 8 O -0.523 6.523 9 C 0.036 3.964 10 H 0.077 0.923 11 C -0.487 4.487 12 H 0.073 0.927 13 C 0.014 3.986 14 N -0.920 5.920 15 Si 0.955 3.045 16 H -0.282 1.282 17 H -0.276 1.276 18 H -0.268 1.268 19 H 0.073 0.927 20 H 0.062 0.938 21 H 0.060 0.940 22 H 0.056 0.944 23 H 0.067 0.933 24 H 0.041 0.959 25 H 0.417 0.583 26 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.736 3.924 6.207 7.837 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.116 4.116 3 C -0.162 4.162 4 C -0.230 4.230 5 H 0.134 0.866 6 C 0.351 3.649 7 O -0.418 6.418 8 O -0.337 6.337 9 C 0.017 3.983 10 H 0.095 0.905 11 C -0.524 4.524 12 H 0.091 0.909 13 C -0.185 4.185 14 N -0.559 5.559 15 Si 0.780 3.220 16 H -0.208 1.208 17 H -0.201 1.201 18 H -0.192 1.192 19 H 0.092 0.908 20 H 0.081 0.919 21 H 0.079 0.921 22 H 0.075 0.925 23 H 0.086 0.914 24 H 0.060 0.940 25 H 0.277 0.723 26 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -2.884 3.872 5.762 7.517 hybrid contribution 1.525 -0.129 -0.044 1.531 sum -1.359 3.743 5.718 6.968 Atomic orbital electron populations 1.21294 0.90021 1.02403 1.02152 1.21788 0.95163 0.90951 1.03729 1.21283 1.00939 0.93639 1.00385 1.22431 0.94951 1.06074 0.99556 0.86634 1.22531 0.87674 0.76700 0.77949 1.90599 1.50860 1.35428 1.64929 1.84484 1.45507 1.68387 1.35308 1.20194 0.96991 0.95915 0.85159 0.90520 1.21177 1.05702 1.05304 1.20192 0.90870 1.25822 1.00485 0.94893 0.97334 1.70037 1.40479 1.10881 1.34514 0.85601 0.79813 0.78747 0.77797 1.20831 1.20148 1.19201 0.90773 0.91915 0.92089 0.92498 0.91404 0.93989 0.72344 0.92629 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -3.20 9.78 71.98 0.70 -2.50 15 2 C -0.12 -4.70 2.70 -52.16 -0.14 -4.84 15 3 C -0.11 -4.19 8.15 71.98 0.59 -3.60 15 4 C -0.21 -9.15 5.94 -11.54 -0.07 -9.22 15 5 H 0.12 4.57 8.05 -2.38 -0.02 4.55 15 6 C 0.51 22.04 7.46 71.24 0.53 22.57 15 7 O -0.53 -25.65 12.94 21.96 0.28 -25.37 15 8 O -0.52 -18.16 13.42 -51.43 -0.69 -18.85 15 9 C 0.04 1.82 5.47 -11.51 -0.06 1.76 15 10 H 0.08 4.14 7.58 -2.39 -0.02 4.12 15 11 C -0.49 -27.23 7.04 25.60 0.18 -27.05 15 12 H 0.07 4.21 4.63 -2.91 -0.01 4.19 15 13 C 0.01 0.80 5.46 84.66 0.46 1.26 15 14 N -0.92 -53.77 12.94 21.45 0.28 -53.50 15 15 Si 0.95 45.18 29.54 68.60 2.03 47.21 15 16 H -0.28 -13.32 7.11 99.48 0.71 -12.62 15 17 H -0.28 -12.50 7.11 99.48 0.71 -11.79 15 18 H -0.27 -12.39 7.11 99.48 0.71 -11.69 15 19 H 0.07 1.94 8.09 -2.39 -0.02 1.92 15 20 H 0.06 1.93 8.14 -2.39 -0.02 1.91 15 21 H 0.06 1.79 7.90 -2.38 -0.02 1.77 15 22 H 0.06 2.64 4.65 -2.39 -0.01 2.63 15 23 H 0.07 2.29 8.03 -2.38 -0.02 2.27 15 24 H 0.04 1.57 7.89 -2.39 -0.02 1.55 15 25 H 0.42 10.19 9.10 -74.06 -0.67 9.52 15 26 H 0.26 14.62 8.31 -92.71 -0.77 13.85 15 Total: -1.00 -64.54 224.55 4.61 -59.93 By element: Atomic # 1 Polarization: 11.66 SS G_CDS: 0.52 Total: 12.18 kcal Atomic # 6 Polarization: -23.81 SS G_CDS: 2.19 Total: -21.61 kcal Atomic # 7 Polarization: -53.77 SS G_CDS: 0.28 Total: -53.50 kcal Atomic # 8 Polarization: -43.81 SS G_CDS: -0.41 Total: -44.21 kcal Atomic # 14 Polarization: 45.18 SS G_CDS: 2.03 Total: 47.21 kcal Total: -64.54 4.61 -59.93 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000005482342.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.073 kcal (2) G-P(sol) polarization free energy of solvation -64.540 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.613 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.609 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.931 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.005 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds