Wall clock time and date at job start Mon Mar 30 2020 02:16:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86799 * 119.99714 * 2 1 4 4 H 1.48508 * 109.47104 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47315 * 299.99621 * 3 2 1 6 6 H 1.48494 * 109.47423 * 60.00165 * 3 2 1 7 7 C 1.37874 * 120.00340 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00271 * 180.02562 * 7 2 1 9 9 C 1.50705 * 119.99848 * 0.02562 * 7 2 1 10 10 O 1.42908 * 108.76965 * 61.48754 * 9 7 2 11 11 C 1.50474 * 108.87752 * 180.02562 * 9 7 2 12 12 C 1.54241 * 108.68067 * 215.02633 * 11 9 7 13 13 C 1.45532 * 112.40753 * 279.91350 * 12 11 9 14 14 C 1.54245 * 112.40824 * 61.93924 * 13 12 11 15 15 C 1.50471 * 108.51963 * 280.01210 * 14 13 12 16 16 C 1.54072 * 112.49702 * 94.15116 * 15 14 13 17 17 H 0.96994 * 120.00312 * 0.02562 * 1 2 3 18 18 H 0.96695 * 114.00191 * 298.51489 * 10 9 7 19 19 H 1.09002 * 109.62953 * 95.21948 * 11 9 7 20 20 H 1.09005 * 109.62746 * 334.83373 * 11 9 7 21 21 H 1.09005 * 108.89663 * 40.67031 * 12 11 9 22 22 H 1.09004 * 108.89540 * 159.15716 * 12 11 9 23 23 H 1.09002 * 108.89819 * 182.69300 * 13 12 11 24 24 H 1.09000 * 108.90027 * 301.18040 * 13 12 11 25 25 H 1.08992 * 109.62605 * 39.72464 * 14 13 12 26 26 H 1.09000 * 109.62768 * 160.11088 * 14 13 12 27 27 H 1.08996 * 108.87764 * 214.92195 * 15 14 13 28 28 H 1.08998 * 108.88359 * 333.37124 * 15 14 13 29 29 H 1.09001 * 108.81672 * 79.13908 * 16 15 14 30 30 H 1.09002 * 108.81404 * 197.53339 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7092 1.3465 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 8 0.4623 -2.5747 -1.1887 11 6 2.2408 -3.6327 0.0018 12 6 1.6650 -4.7921 -0.8368 13 6 0.6940 -5.5836 -0.0960 14 6 -0.5352 -4.7561 0.3321 15 6 -0.1741 -3.9639 1.5594 16 6 0.3088 -2.5405 1.2213 17 1 -0.4850 0.8400 -0.0004 18 1 -0.2020 -1.8763 -1.2651 19 1 2.4105 -3.9695 1.0245 20 1 3.1819 -3.2975 -0.4342 21 1 1.1825 -4.3808 -1.7234 22 1 2.4829 -5.4405 -1.1511 23 1 0.3615 -6.4112 -0.7227 24 1 1.1745 -5.9887 0.7946 25 1 -0.8175 -4.0769 -0.4722 26 1 -1.3667 -5.4245 0.5558 27 1 -1.0496 -3.8951 2.2050 28 1 0.6174 -4.4866 2.0964 29 1 -0.5594 -1.9139 1.0170 30 1 0.8392 -2.1352 2.0830 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000034075565.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:16:55 Heat of formation + Delta-G solvation = -72.268061 kcal Electronic energy + Delta-G solvation = -12235.285390 eV Core-core repulsion = 10222.621173 eV Total energy + Delta-G solvation = -2012.664217 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.120 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -38.35524 -34.35574 -32.02813 -31.22101 -29.81467 -25.46512 -23.76522 -22.11664 -19.42486 -18.30835 -16.89196 -15.12394 -14.70572 -14.06983 -13.79359 -13.23961 -12.61218 -12.12381 -11.92433 -11.73565 -11.37166 -11.04868 -10.80126 -10.43910 -10.37221 -10.18741 -9.66232 -9.60131 -9.32132 -9.26827 -8.91685 -8.48365 -7.75771 -6.08166 -4.18132 3.25259 3.33933 3.38441 4.37687 5.15103 5.54875 5.62605 5.78730 6.21953 6.22837 6.26182 6.36720 6.46820 6.54666 6.60324 6.82057 6.89465 6.97667 7.04818 7.20814 7.28244 7.41859 7.46593 7.73468 7.86560 8.12372 8.33886 8.85547 9.50049 9.66800 10.94318 Molecular weight = 184.12amu Principal moments of inertia in cm(-1) A = 0.065492 B = 0.014365 C = 0.013347 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 427.431590 B = 1948.668433 C = 2097.370581 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.068 3.932 3 Si 0.895 3.105 4 H -0.274 1.274 5 H -0.283 1.283 6 H -0.284 1.284 7 C -0.535 4.535 8 H 0.057 0.943 9 C 0.252 3.748 10 O -0.586 6.586 11 C -0.092 4.092 12 C -0.117 4.117 13 C -0.102 4.102 14 C -0.121 4.121 15 C -0.116 4.116 16 C -0.126 4.126 17 H 0.263 0.737 18 H 0.372 0.628 19 H 0.048 0.952 20 H 0.052 0.948 21 H 0.083 0.917 22 H 0.033 0.967 23 H 0.041 0.959 24 H 0.042 0.958 25 H 0.089 0.911 26 H 0.038 0.962 27 H 0.036 0.964 28 H 0.041 0.959 29 H 0.082 0.918 30 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.174 -5.630 0.868 5.700 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.133 4.133 3 Si 0.723 3.277 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.573 4.573 8 H 0.075 0.925 9 C 0.213 3.787 10 O -0.395 6.395 11 C -0.129 4.129 12 C -0.155 4.155 13 C -0.139 4.139 14 C -0.158 4.158 15 C -0.154 4.154 16 C -0.164 4.164 17 H 0.073 0.927 18 H 0.222 0.778 19 H 0.067 0.933 20 H 0.071 0.929 21 H 0.101 0.899 22 H 0.051 0.949 23 H 0.060 0.940 24 H 0.061 0.939 25 H 0.108 0.892 26 H 0.057 0.943 27 H 0.055 0.945 28 H 0.059 0.941 29 H 0.101 0.899 30 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 0.067 -6.032 0.770 6.081 hybrid contribution 0.150 1.512 0.318 1.552 sum 0.217 -4.520 1.087 4.654 Atomic orbital electron populations 1.69684 1.05819 1.26858 1.51491 1.25018 0.94963 0.99280 0.94005 0.86501 0.80197 0.83492 0.77540 1.19826 1.20953 1.21046 1.22025 0.93511 0.91480 1.50292 0.92450 1.18302 0.87072 0.91570 0.81766 1.86140 1.53308 1.55126 1.44923 1.21339 0.98421 0.95067 0.98116 1.20272 0.97489 0.96433 1.01270 1.20360 0.96785 0.97639 0.99124 1.21422 0.96007 0.98434 0.99972 1.21408 0.98848 0.98329 0.96777 1.22565 1.01653 0.92949 0.99231 0.92653 0.77812 0.93339 0.92895 0.89872 0.94856 0.94043 0.93911 0.89216 0.94319 0.94516 0.94066 0.89924 0.94030 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.20 9.76 55.43 0.54 -23.66 16 2 C 0.07 1.84 5.20 -17.82 -0.09 1.75 16 3 Si 0.89 21.07 29.54 -169.99 -5.02 16.05 16 4 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 5 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 6 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 7 C -0.53 -14.60 8.00 -34.44 -0.28 -14.87 16 8 H 0.06 1.58 7.42 -52.49 -0.39 1.19 16 9 C 0.25 6.22 0.64 -92.37 -0.06 6.17 16 10 O -0.59 -14.72 8.39 -35.23 -0.30 -15.01 16 11 C -0.09 -2.03 5.06 -27.34 -0.14 -2.17 16 12 C -0.12 -2.31 5.18 -29.60 -0.15 -2.46 16 13 C -0.10 -1.81 5.26 -29.60 -0.16 -1.97 16 14 C -0.12 -2.28 5.61 -27.34 -0.15 -2.44 16 15 C -0.12 -2.31 5.31 -27.43 -0.15 -2.46 16 16 C -0.13 -2.97 4.34 -25.51 -0.11 -3.08 16 17 H 0.26 6.81 8.31 -40.82 -0.34 6.47 16 18 H 0.37 9.72 7.09 45.56 0.32 10.04 16 19 H 0.05 1.02 6.98 -51.93 -0.36 0.66 16 20 H 0.05 1.19 7.47 -51.93 -0.39 0.80 16 21 H 0.08 1.79 6.23 -51.93 -0.32 1.46 16 22 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 23 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 24 H 0.04 0.72 7.47 -51.93 -0.39 0.34 16 25 H 0.09 1.88 5.72 -51.93 -0.30 1.58 16 26 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.04 0.78 6.63 -51.93 -0.34 0.44 16 29 H 0.08 2.12 6.36 -51.93 -0.33 1.79 16 30 H 0.04 1.02 7.97 -51.93 -0.41 0.61 16 LS Contribution 223.81 15.07 3.37 3.37 Total: -1.00 -26.66 223.81 -6.43 -33.08 By element: Atomic # 1 Polarization: 11.44 SS G_CDS: -3.74 Total: 7.70 kcal Atomic # 6 Polarization: -20.25 SS G_CDS: -1.28 Total: -21.54 kcal Atomic # 7 Polarization: -24.20 SS G_CDS: 0.54 Total: -23.66 kcal Atomic # 8 Polarization: -14.72 SS G_CDS: -0.30 Total: -15.01 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Total LS contribution 3.37 Total: 3.37 kcal Total: -26.66 -6.43 -33.08 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000034075565.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.186 kcal (2) G-P(sol) polarization free energy of solvation -26.656 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.842 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.426 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.082 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.268 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds