Wall clock time and date at job start Mon Mar 30 2020 02:16:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86799 * 119.99714 * 2 1 4 4 H 1.48508 * 109.47104 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47315 * 299.99621 * 3 2 1 6 6 H 1.48494 * 109.47423 * 60.00165 * 3 2 1 7 7 C 1.37874 * 120.00340 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00271 * 180.02562 * 7 2 1 9 9 C 1.50705 * 119.99848 * 0.02562 * 7 2 1 10 10 O 1.42908 * 108.76965 * 61.48754 * 9 7 2 11 11 C 1.50474 * 108.87752 * 180.02562 * 9 7 2 12 12 C 1.54241 * 108.68067 * 215.02633 * 11 9 7 13 13 C 1.45532 * 112.40753 * 279.91350 * 12 11 9 14 14 C 1.54245 * 112.40824 * 61.93924 * 13 12 11 15 15 C 1.50471 * 108.51963 * 280.01210 * 14 13 12 16 16 C 1.54072 * 112.49702 * 94.15116 * 15 14 13 17 17 H 0.96994 * 120.00312 * 0.02562 * 1 2 3 18 18 H 0.96695 * 114.00191 * 298.51489 * 10 9 7 19 19 H 1.09002 * 109.62953 * 95.21948 * 11 9 7 20 20 H 1.09005 * 109.62746 * 334.83373 * 11 9 7 21 21 H 1.09005 * 108.89663 * 40.67031 * 12 11 9 22 22 H 1.09004 * 108.89540 * 159.15716 * 12 11 9 23 23 H 1.09002 * 108.89819 * 182.69300 * 13 12 11 24 24 H 1.09000 * 108.90027 * 301.18040 * 13 12 11 25 25 H 1.08992 * 109.62605 * 39.72464 * 14 13 12 26 26 H 1.09000 * 109.62768 * 160.11088 * 14 13 12 27 27 H 1.08996 * 108.87764 * 214.92195 * 15 14 13 28 28 H 1.08998 * 108.88359 * 333.37124 * 15 14 13 29 29 H 1.09001 * 108.81672 * 79.13908 * 16 15 14 30 30 H 1.09002 * 108.81404 * 197.53339 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7092 1.3465 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 8 0.4623 -2.5747 -1.1887 11 6 2.2408 -3.6327 0.0018 12 6 1.6650 -4.7921 -0.8368 13 6 0.6940 -5.5836 -0.0960 14 6 -0.5352 -4.7561 0.3321 15 6 -0.1741 -3.9639 1.5594 16 6 0.3088 -2.5405 1.2213 17 1 -0.4850 0.8400 -0.0004 18 1 -0.2020 -1.8763 -1.2651 19 1 2.4105 -3.9695 1.0245 20 1 3.1819 -3.2975 -0.4342 21 1 1.1825 -4.3808 -1.7234 22 1 2.4829 -5.4405 -1.1511 23 1 0.3615 -6.4112 -0.7227 24 1 1.1745 -5.9887 0.7946 25 1 -0.8175 -4.0769 -0.4722 26 1 -1.3667 -5.4245 0.5558 27 1 -1.0496 -3.8951 2.2050 28 1 0.6174 -4.4866 2.0964 29 1 -0.5594 -1.9139 1.0170 30 1 0.8392 -2.1352 2.0830 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000034075565.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:16:54 Heat of formation + Delta-G solvation = -88.209306 kcal Electronic energy + Delta-G solvation = -12235.976655 eV Core-core repulsion = 10222.621173 eV Total energy + Delta-G solvation = -2013.355481 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.120 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -40.10677 -36.13671 -34.06378 -32.88582 -31.64769 -27.41981 -25.46227 -23.88090 -20.96745 -20.15408 -18.89613 -17.08747 -16.39554 -15.89330 -15.61213 -14.86949 -14.37877 -13.79532 -13.64539 -13.45795 -13.27942 -12.90578 -12.54007 -12.31430 -12.26411 -12.02762 -11.32058 -11.18132 -11.03914 -10.94370 -10.75314 -10.50120 -9.71742 -8.12525 -6.30747 1.36904 1.40433 1.50531 2.39950 3.07271 4.03194 4.11546 4.26208 4.41706 4.59094 4.62072 4.69638 4.82041 4.92193 5.04523 5.13669 5.30833 5.34818 5.49308 5.58854 5.61637 5.66767 5.68014 5.78664 6.03254 6.18706 6.32474 6.77346 7.40677 7.60236 8.87058 Molecular weight = 184.12amu Principal moments of inertia in cm(-1) A = 0.065492 B = 0.014365 C = 0.013347 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 427.431590 B = 1948.668433 C = 2097.370581 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C 0.028 3.972 3 Si 0.952 3.048 4 H -0.274 1.274 5 H -0.279 1.279 6 H -0.279 1.279 7 C -0.565 4.565 8 H 0.045 0.955 9 C 0.244 3.756 10 O -0.584 6.584 11 C -0.093 4.093 12 C -0.110 4.110 13 C -0.102 4.102 14 C -0.121 4.121 15 C -0.111 4.111 16 C -0.117 4.117 17 H 0.266 0.734 18 H 0.363 0.637 19 H 0.058 0.942 20 H 0.040 0.960 21 H 0.060 0.940 22 H 0.056 0.944 23 H 0.066 0.934 24 H 0.058 0.942 25 H 0.064 0.936 26 H 0.065 0.935 27 H 0.049 0.951 28 H 0.053 0.947 29 H 0.057 0.943 30 H 0.021 0.979 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.107 -6.675 1.160 6.776 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.171 4.171 3 Si 0.778 3.222 4 H -0.199 1.199 5 H -0.205 1.205 6 H -0.205 1.205 7 C -0.603 4.603 8 H 0.064 0.936 9 C 0.205 3.795 10 O -0.392 6.392 11 C -0.131 4.131 12 C -0.148 4.148 13 C -0.139 4.139 14 C -0.158 4.158 15 C -0.148 4.148 16 C -0.156 4.156 17 H 0.075 0.925 18 H 0.212 0.788 19 H 0.077 0.923 20 H 0.059 0.941 21 H 0.079 0.921 22 H 0.075 0.925 23 H 0.085 0.915 24 H 0.077 0.923 25 H 0.082 0.918 26 H 0.084 0.916 27 H 0.068 0.932 28 H 0.072 0.928 29 H 0.075 0.925 30 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges 0.135 -7.087 1.061 7.168 hybrid contribution 0.128 1.856 0.222 1.873 sum 0.263 -5.232 1.283 5.393 Atomic orbital electron populations 1.69781 1.06563 1.27542 1.51155 1.25663 0.95825 1.01998 0.93651 0.85608 0.78922 0.79978 0.77650 1.19906 1.20513 1.20490 1.22341 0.93286 0.93365 1.51344 0.93646 1.18456 0.87505 0.91690 0.81881 1.86172 1.53085 1.54532 1.45401 1.21317 0.97239 0.95325 0.99198 1.20216 0.98568 0.95911 1.00069 1.20355 0.95806 0.97745 1.00004 1.21395 0.97577 0.98443 0.98373 1.21349 0.99700 0.95944 0.97825 1.22392 1.00084 0.95208 0.97889 0.92479 0.78823 0.92340 0.94109 0.92115 0.92534 0.91550 0.92341 0.91760 0.91589 0.93215 0.92785 0.92453 0.96022 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -49.58 9.76 21.45 0.21 -49.37 16 2 C 0.03 1.54 5.20 84.65 0.44 1.98 16 3 Si 0.95 43.42 29.54 68.60 2.03 45.44 16 4 H -0.27 -12.44 7.11 99.48 0.71 -11.74 16 5 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 6 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 7 C -0.57 -31.32 8.00 25.60 0.20 -31.11 16 8 H 0.05 2.55 7.42 -2.91 -0.02 2.53 16 9 C 0.24 12.11 0.64 -11.93 -0.01 12.10 16 10 O -0.58 -29.70 8.39 -148.98 -1.25 -30.95 16 11 C -0.09 -4.05 5.06 30.20 0.15 -3.90 16 12 C -0.11 -4.11 5.18 28.73 0.15 -3.96 16 13 C -0.10 -3.28 5.26 28.74 0.15 -3.13 16 14 C -0.12 -4.24 5.61 30.20 0.17 -4.07 16 15 C -0.11 -4.20 5.31 30.14 0.16 -4.04 16 16 C -0.12 -5.56 4.34 31.39 0.14 -5.43 16 17 H 0.27 13.79 8.31 -92.71 -0.77 13.02 16 18 H 0.36 19.46 7.09 -74.06 -0.52 18.94 16 19 H 0.06 2.38 6.98 -2.39 -0.02 2.36 16 20 H 0.04 1.82 7.47 -2.38 -0.02 1.80 16 21 H 0.06 2.54 6.23 -2.38 -0.01 2.53 16 22 H 0.06 1.83 8.14 -2.38 -0.02 1.81 16 23 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 24 H 0.06 1.73 7.47 -2.39 -0.02 1.71 16 25 H 0.06 2.62 5.72 -2.39 -0.01 2.60 16 26 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 27 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 28 H 0.05 1.91 6.63 -2.39 -0.02 1.89 16 29 H 0.06 2.98 6.36 -2.39 -0.02 2.97 16 30 H 0.02 1.06 7.97 -2.39 -0.02 1.04 16 Total: -1.00 -56.12 223.81 3.14 -52.98 By element: Atomic # 1 Polarization: 22.85 SS G_CDS: 0.60 Total: 23.45 kcal Atomic # 6 Polarization: -43.11 SS G_CDS: 1.56 Total: -41.56 kcal Atomic # 7 Polarization: -49.58 SS G_CDS: 0.21 Total: -49.37 kcal Atomic # 8 Polarization: -29.70 SS G_CDS: -1.25 Total: -30.95 kcal Atomic # 14 Polarization: 43.42 SS G_CDS: 2.03 Total: 45.44 kcal Total: -56.12 3.14 -52.98 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000034075565.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.226 kcal (2) G-P(sol) polarization free energy of solvation -56.120 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.346 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.137 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.983 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.209 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds