Wall clock time and date at job start Mon Mar 30 2020 02:16:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86801 * 119.99837 * 2 1 4 4 H 1.48500 * 109.47157 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47297 * 300.00388 * 3 2 1 6 6 H 1.48502 * 109.46886 * 60.00598 * 3 2 1 7 7 C 1.37880 * 120.00024 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99634 * 179.97438 * 7 2 1 9 9 C 1.50693 * 120.00014 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.47423 * 180.02562 * 9 7 2 11 11 C 1.52998 * 109.47681 * 184.99900 * 10 9 7 12 12 C 1.52997 * 109.47201 * 179.97438 * 11 10 9 13 13 C 1.52999 * 109.46862 * 60.00295 * 12 11 10 14 14 O 1.42903 * 109.47256 * 60.00148 * 13 12 11 15 15 C 1.53001 * 109.47329 * 299.99879 * 13 12 11 16 16 C 1.52997 * 109.47050 * 60.00237 * 15 13 12 17 17 H 0.97000 * 120.00201 * 359.97438 * 1 2 3 18 18 H 1.09007 * 109.47236 * 60.00309 * 9 7 2 19 19 H 1.09001 * 109.47242 * 300.00357 * 9 7 2 20 20 H 1.09006 * 109.47253 * 305.00717 * 10 9 7 21 21 H 1.09009 * 109.46785 * 60.00155 * 11 10 9 22 22 H 1.08997 * 109.47329 * 300.00500 * 11 10 9 23 23 H 1.08997 * 109.47549 * 300.00564 * 12 11 10 24 24 H 1.08997 * 109.46932 * 180.02562 * 12 11 10 25 25 H 1.09008 * 109.47201 * 179.97438 * 13 12 11 26 26 H 0.96700 * 114.00311 * 180.02562 * 14 13 12 27 27 H 1.08999 * 109.47164 * 180.02562 * 15 13 12 28 28 H 1.08997 * 109.47124 * 299.99757 * 15 13 12 29 29 H 1.08997 * 109.46932 * 180.02562 * 16 15 13 30 30 H 1.08997 * 109.47549 * 59.99780 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3966 -1.2125 6 1 1.8904 2.3964 1.2126 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 6 1.4846 -4.9836 -0.1262 12 6 2.4789 -6.1464 -0.1269 13 6 3.2741 -6.1381 1.1802 14 8 2.3776 -6.2785 2.2842 15 6 4.0349 -4.8166 1.3060 16 6 3.0406 -3.6538 1.3066 17 1 -0.4850 0.8400 0.0004 18 1 0.6241 -2.5567 -0.8904 19 1 0.6248 -2.5571 0.8896 20 1 2.9296 -3.5552 -0.8423 21 1 0.9183 -4.9896 -1.0577 22 1 0.8004 -5.0904 0.7155 23 1 3.1627 -6.0393 -0.9688 24 1 1.9369 -7.0878 -0.2169 25 1 3.9822 -6.9668 1.1800 26 1 2.8137 -6.2810 3.1472 27 1 4.6017 -4.8109 2.2370 28 1 4.7187 -4.7095 0.4640 29 1 3.5826 -2.7123 1.3958 30 1 2.3567 -3.7609 2.1486 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000034206847.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:16:28 Heat of formation + Delta-G solvation = -108.794718 kcal Electronic energy + Delta-G solvation = -11574.556251 eV Core-core repulsion = 9560.308120 eV Total energy + Delta-G solvation = -2014.248132 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.120 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.06287 -36.69281 -34.78391 -32.12230 -31.58570 -28.30708 -24.97594 -23.46025 -21.77364 -20.47423 -18.43701 -17.61602 -16.72351 -16.39161 -15.56635 -14.85496 -14.62227 -14.01721 -13.91832 -13.78668 -13.04080 -12.90775 -12.65825 -12.53191 -12.24960 -12.16429 -11.84411 -11.45615 -11.22798 -10.98091 -10.69933 -10.51092 -10.35231 -8.17923 -6.28066 1.38513 1.39001 1.52258 2.41075 3.14620 3.51502 3.92591 3.96638 4.11793 4.39447 4.44436 4.64238 4.71257 4.74613 4.76860 5.05404 5.10478 5.19242 5.30278 5.35656 5.44110 5.48597 5.55348 5.64330 5.85506 5.92006 6.29342 6.88588 7.03891 7.40320 8.94506 Molecular weight = 184.12amu Principal moments of inertia in cm(-1) A = 0.068087 B = 0.009989 C = 0.009431 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 411.140264 B = 2802.299981 C = 2968.253010 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.006 4.006 3 Si 0.964 3.036 4 H -0.260 1.260 5 H -0.279 1.279 6 H -0.279 1.279 7 C -0.528 4.528 8 H 0.062 0.938 9 C 0.030 3.970 10 C -0.074 4.074 11 C -0.107 4.107 12 C -0.109 4.109 13 C 0.108 3.892 14 O -0.583 6.583 15 C -0.145 4.145 16 C -0.095 4.095 17 H 0.262 0.738 18 H -0.017 1.017 19 H -0.018 1.018 20 H 0.053 0.947 21 H 0.047 0.953 22 H 0.044 0.956 23 H 0.086 0.914 24 H 0.071 0.929 25 H 0.079 0.921 26 H 0.388 0.612 27 H 0.079 0.921 28 H 0.076 0.924 29 H 0.046 0.954 30 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.934 -10.858 2.412 14.267 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.203 4.203 3 Si 0.789 3.211 4 H -0.184 1.184 5 H -0.205 1.205 6 H -0.205 1.205 7 C -0.566 4.566 8 H 0.080 0.920 9 C -0.007 4.007 10 C -0.092 4.092 11 C -0.145 4.145 12 C -0.147 4.147 13 C 0.050 3.950 14 O -0.391 6.391 15 C -0.182 4.182 16 C -0.132 4.132 17 H 0.070 0.930 18 H 0.001 0.999 19 H 0.000 1.000 20 H 0.071 0.929 21 H 0.066 0.934 22 H 0.063 0.937 23 H 0.105 0.895 24 H 0.090 0.910 25 H 0.097 0.903 26 H 0.237 0.763 27 H 0.097 0.903 28 H 0.094 0.906 29 H 0.064 0.936 30 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 8.362 -10.774 1.930 13.774 hybrid contribution 0.149 1.247 0.377 1.312 sum 8.511 -9.526 2.307 12.981 Atomic orbital electron populations 1.70130 1.07910 1.27505 1.52295 1.26029 0.95748 1.03444 0.95084 0.85410 0.79177 0.78853 0.77685 1.18360 1.20463 1.20512 1.21690 0.93426 0.92030 1.49435 0.91977 1.19050 0.94183 0.93552 0.93899 1.21058 0.96784 0.93867 0.97512 1.21449 0.98147 0.94636 1.00226 1.21578 0.98444 0.98000 0.96644 1.21834 0.90720 0.95792 0.86694 1.86518 1.38433 1.96387 1.17757 1.22258 0.97811 0.95058 1.03113 1.21281 0.97468 0.97701 0.96770 0.92956 0.99890 0.99961 0.92855 0.93426 0.93725 0.89524 0.90996 0.90283 0.76310 0.90258 0.90580 0.93553 0.93895 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.14 13.29 21.45 0.28 -58.85 16 2 C -0.01 -0.37 5.46 84.65 0.46 0.10 16 3 Si 0.96 45.34 29.54 68.60 2.03 47.37 16 4 H -0.26 -11.54 7.11 99.48 0.71 -10.83 16 5 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 6 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 7 C -0.53 -30.82 8.41 25.60 0.22 -30.60 16 8 H 0.06 3.46 7.06 -2.91 -0.02 3.44 16 9 C 0.03 1.68 4.45 29.85 0.13 1.82 16 10 C -0.07 -3.17 2.14 -10.79 -0.02 -3.19 16 11 C -0.11 -4.00 5.06 30.59 0.15 -3.85 16 12 C -0.11 -3.05 5.66 30.59 0.17 -2.87 16 13 C 0.11 2.68 3.77 30.59 0.12 2.80 16 14 O -0.58 -15.81 11.97 -148.98 -1.78 -17.59 16 15 C -0.14 -3.89 5.64 30.59 0.17 -3.72 16 16 C -0.09 -3.61 4.87 30.60 0.15 -3.47 16 17 H 0.26 15.44 8.31 -92.71 -0.77 14.67 16 18 H -0.02 -1.05 8.14 -2.38 -0.02 -1.07 16 19 H -0.02 -1.11 8.14 -2.39 -0.02 -1.13 16 20 H 0.05 2.26 8.14 -2.38 -0.02 2.24 16 21 H 0.05 1.78 8.14 -2.38 -0.02 1.76 16 22 H 0.04 1.82 7.68 -2.39 -0.02 1.80 16 23 H 0.09 2.13 8.14 -2.39 -0.02 2.11 16 24 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 25 H 0.08 1.48 8.14 -2.38 -0.02 1.46 16 26 H 0.39 7.06 9.08 -74.06 -0.67 6.39 16 27 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 28 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 29 H 0.05 1.92 6.95 -2.39 -0.02 1.90 16 30 H 0.04 1.75 7.68 -2.39 -0.02 1.73 16 Total: -1.00 -68.84 241.61 2.51 -66.33 By element: Atomic # 1 Polarization: 5.30 SS G_CDS: 0.43 Total: 5.73 kcal Atomic # 6 Polarization: -44.54 SS G_CDS: 1.55 Total: -42.99 kcal Atomic # 7 Polarization: -59.14 SS G_CDS: 0.28 Total: -58.85 kcal Atomic # 8 Polarization: -15.81 SS G_CDS: -1.78 Total: -17.59 kcal Atomic # 14 Polarization: 45.34 SS G_CDS: 2.03 Total: 47.37 kcal Total: -68.84 2.51 -66.33 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000034206847.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.463 kcal (2) G-P(sol) polarization free energy of solvation -68.840 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.303 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.509 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.332 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.795 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds