Wall clock time and date at job start Mon Mar 30 2020 01:54:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35671 * 116.99840 * 2 1 4 4 C 1.31257 * 124.51037 * 359.95759 * 3 2 1 5 5 C 1.51108 * 110.98100 * 180.02562 * 4 3 2 6 6 C 1.54611 * 104.76663 * 16.49706 * 5 4 3 7 7 C 1.51106 * 124.50658 * 180.02562 * 3 2 1 8 8 O 1.42904 * 110.37995 * 282.29397 * 7 3 2 9 9 C 1.50707 * 110.37756 * 44.64773 * 7 3 2 10 10 H 1.08005 * 119.99582 * 118.54623 * 9 7 3 11 11 C 1.37870 * 120.00026 * 298.54566 * 9 7 3 12 12 N 1.31512 * 120.00045 * 359.97438 * 11 9 7 13 13 Si 1.86800 * 120.00081 * 180.02562 * 11 9 7 14 14 H 1.48507 * 109.46966 * 59.99566 * 13 11 9 15 15 H 1.48497 * 109.47676 * 179.97438 * 13 11 9 16 16 H 1.48499 * 109.47066 * 300.00123 * 13 11 9 17 17 H 1.08996 * 109.46924 * 59.99747 * 1 2 3 18 18 H 1.08993 * 109.47239 * 180.02562 * 1 2 3 19 19 H 1.09003 * 109.46573 * 300.00241 * 1 2 3 20 20 H 1.07997 * 124.51268 * 0.07898 * 4 3 2 21 21 H 1.09003 * 110.37691 * 135.32108 * 5 4 3 22 22 H 1.08995 * 110.38136 * 257.56186 * 5 4 3 23 23 H 1.09003 * 111.01969 * 217.16994 * 6 5 4 24 24 H 1.09003 * 111.01941 * 93.28148 * 6 5 4 25 25 H 0.96699 * 114.00105 * 61.45702 * 8 7 3 26 26 H 0.97005 * 119.99707 * 179.97438 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2089 0.0000 4 6 1.4188 2.3625 -0.0008 5 6 2.4007 3.5110 -0.0012 6 6 3.7465 2.8788 -0.4250 7 6 3.5430 1.4063 -0.0006 8 8 4.0742 1.1883 1.3081 9 6 4.1942 0.4786 -0.9938 10 1 4.7529 0.8833 -1.8249 11 6 4.0769 -0.8866 -0.8416 12 7 3.3971 -1.3794 0.1706 13 14 4.8846 -2.0365 -2.0723 14 1 6.3509 -1.8012 -2.0811 15 1 4.6121 -3.4445 -1.6871 16 1 4.3337 -1.7779 -3.4269 17 1 -0.3633 0.5139 -0.8899 18 1 -0.3633 -1.0276 0.0005 19 1 -0.3632 0.5139 0.8900 20 1 0.3448 2.4758 -0.0003 21 1 2.0953 4.2713 -0.7201 22 1 2.4799 3.9431 0.9963 23 1 4.5782 3.3305 0.1157 24 1 3.8936 2.9579 -1.5022 25 1 3.9313 0.2938 1.6466 26 1 3.3142 -2.3400 0.2775 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000038995644.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:54:15 Heat of formation + Delta-G solvation = -62.258804 kcal Electronic energy + Delta-G solvation = -11838.059192 eV Core-core repulsion = 9689.995915 eV Total energy + Delta-G solvation = -2148.063278 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 184.089 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -38.74616 -36.11403 -33.45845 -32.03252 -27.53148 -27.40053 -25.79739 -23.46175 -19.55681 -18.30934 -17.09155 -16.27829 -14.83979 -14.45659 -14.24301 -13.64666 -13.13928 -12.61375 -12.20052 -11.59895 -11.31815 -10.91800 -10.82833 -10.51015 -10.45470 -10.19916 -10.18566 -10.03833 -9.26132 -8.48559 -8.18788 -7.07740 -6.06711 -4.18268 3.29714 3.34311 3.37272 3.54455 4.39126 4.51922 5.19937 5.77587 5.91234 5.93809 5.95548 6.08993 6.16870 6.40819 6.46074 6.62927 6.95746 7.02389 7.32203 7.38860 7.55940 7.87816 8.10779 8.76370 8.99148 9.41566 9.52997 10.96334 Molecular weight = 184.09amu Principal moments of inertia in cm(-1) A = 0.041384 B = 0.019476 C = 0.015664 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 676.427890 B = 1437.313070 C = 1787.134129 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.242 6.242 3 C 0.118 3.882 4 C -0.368 4.368 5 C -0.063 4.063 6 C -0.103 4.103 7 C 0.289 3.711 8 O -0.580 6.580 9 C -0.550 4.550 10 H 0.063 0.937 11 C 0.077 3.923 12 N -0.856 5.856 13 Si 0.897 3.103 14 H -0.276 1.276 15 H -0.286 1.286 16 H -0.277 1.277 17 H 0.035 0.965 18 H 0.081 0.919 19 H 0.035 0.965 20 H 0.103 0.897 21 H 0.047 0.953 22 H 0.052 0.948 23 H 0.067 0.933 24 H 0.072 0.928 25 H 0.382 0.618 26 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.495 2.493 -0.513 4.324 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.151 6.151 3 C 0.069 3.931 4 C -0.388 4.388 5 C -0.100 4.100 6 C -0.141 4.141 7 C 0.249 3.751 8 O -0.389 6.389 9 C -0.588 4.588 10 H 0.081 0.919 11 C -0.129 4.129 12 N -0.493 5.493 13 Si 0.725 3.275 14 H -0.201 1.201 15 H -0.212 1.212 16 H -0.203 1.203 17 H 0.053 0.947 18 H 0.099 0.901 19 H 0.054 0.946 20 H 0.121 0.879 21 H 0.066 0.934 22 H 0.071 0.929 23 H 0.086 0.914 24 H 0.091 0.909 25 H 0.232 0.768 26 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -3.288 2.727 -0.482 4.299 hybrid contribution -0.386 -1.160 -0.665 1.392 sum -3.674 1.567 -1.147 4.156 Atomic orbital electron populations 1.22908 0.83938 1.01716 0.99335 1.86718 1.16071 1.25902 1.86361 1.23067 0.97445 0.83562 0.89002 1.22712 0.97787 0.94963 1.23297 1.20740 0.94155 0.95845 0.99289 1.22278 0.96441 0.95036 1.00295 1.18226 0.82606 0.91530 0.82753 1.86186 1.81524 1.37296 1.33914 1.21550 1.34560 0.91215 1.11439 0.91908 1.25019 0.94040 0.98242 0.95573 1.69634 1.37509 1.13088 1.29073 0.86586 0.79902 0.79500 0.81549 1.20134 1.21185 1.20264 0.94669 0.90081 0.94616 0.87938 0.93399 0.92932 0.91431 0.90901 0.76814 0.92352 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.34 9.98 101.05 1.01 1.35 15 2 O -0.24 -6.07 7.52 -18.72 -0.14 -6.21 15 3 C 0.12 2.99 6.03 -35.89 -0.22 2.77 15 4 C -0.37 -8.30 9.80 -35.89 -0.35 -8.65 15 5 C -0.06 -1.30 6.81 -26.84 -0.18 -1.48 15 6 C -0.10 -2.33 6.41 -25.05 -0.16 -2.49 15 7 C 0.29 7.61 0.92 -91.89 -0.08 7.53 15 8 O -0.58 -15.79 13.04 -35.23 -0.46 -16.25 15 9 C -0.55 -15.37 8.25 -34.44 -0.28 -15.66 15 10 H 0.06 1.72 7.62 -52.48 -0.40 1.32 15 11 C 0.08 2.09 5.06 -17.82 -0.09 2.00 15 12 N -0.86 -23.43 9.05 55.43 0.50 -22.93 15 13 Si 0.90 21.13 29.54 -169.99 -5.02 16.11 15 14 H -0.28 -6.45 7.11 56.52 0.40 -6.05 15 15 H -0.29 -6.63 7.11 56.52 0.40 -6.23 15 16 H -0.28 -6.52 7.11 56.52 0.40 -6.12 15 17 H 0.03 0.63 7.93 -51.93 -0.41 0.22 15 18 H 0.08 1.38 8.14 -51.93 -0.42 0.96 15 19 H 0.04 0.64 7.93 -51.93 -0.41 0.23 15 20 H 0.10 2.10 7.13 -52.49 -0.37 1.73 15 21 H 0.05 0.87 8.14 -51.93 -0.42 0.44 15 22 H 0.05 1.04 8.14 -51.93 -0.42 0.62 15 23 H 0.07 1.45 8.10 -51.93 -0.42 1.03 15 24 H 0.07 1.58 7.79 -51.93 -0.40 1.17 15 25 H 0.38 10.49 7.35 45.56 0.33 10.82 15 26 H 0.27 6.98 8.31 -40.82 -0.34 6.64 15 LS Contribution 220.29 15.07 3.32 3.32 Total: -1.00 -29.16 220.29 -4.65 -33.81 By element: Atomic # 1 Polarization: 9.27 SS G_CDS: -2.49 Total: 6.78 kcal Atomic # 6 Polarization: -14.26 SS G_CDS: -0.36 Total: -14.62 kcal Atomic # 7 Polarization: -23.43 SS G_CDS: 0.50 Total: -22.93 kcal Atomic # 8 Polarization: -21.86 SS G_CDS: -0.60 Total: -22.46 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Total LS contribution 3.32 Total: 3.32 kcal Total: -29.16 -4.65 -33.81 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000038995644.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.452 kcal (2) G-P(sol) polarization free energy of solvation -29.155 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.607 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.652 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.807 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.259 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds