Wall clock time and date at job start Mon Mar 30 2020 01:54:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35665 * 116.99933 * 2 1 4 4 C 1.31264 * 124.50997 * 359.97438 * 3 2 1 5 5 C 1.51103 * 110.98449 * 180.28922 * 4 3 2 6 6 C 1.54798 * 104.67784 * 343.10620 * 5 4 3 7 7 C 1.51107 * 124.51130 * 179.97438 * 3 2 1 8 8 O 1.42897 * 110.37853 * 77.64769 * 7 3 2 9 9 C 1.50701 * 110.37479 * 315.40639 * 7 3 2 10 10 H 1.07995 * 120.00514 * 4.46127 * 9 7 3 11 11 C 1.37879 * 119.99598 * 184.45980 * 9 7 3 12 12 N 1.31518 * 119.99958 * 183.53252 * 11 9 7 13 13 Si 1.86797 * 120.00155 * 3.52283 * 11 9 7 14 14 H 1.48506 * 109.46990 * 84.77150 * 13 11 9 15 15 H 1.48497 * 109.47504 * 204.76921 * 13 11 9 16 16 H 1.48499 * 109.47371 * 324.77531 * 13 11 9 17 17 H 1.08999 * 109.47195 * 60.00055 * 1 2 3 18 18 H 1.09004 * 109.46865 * 180.02562 * 1 2 3 19 19 H 1.09000 * 109.47143 * 300.00259 * 1 2 3 20 20 H 1.08001 * 124.50826 * 0.02562 * 4 3 2 21 21 H 1.09000 * 110.38140 * 102.05929 * 5 4 3 22 22 H 1.09001 * 110.37889 * 224.42184 * 5 4 3 23 23 H 1.09003 * 111.24771 * 267.01305 * 6 5 4 24 24 H 1.08996 * 110.86597 * 143.06936 * 6 5 4 25 25 H 0.96702 * 114.00148 * 298.55154 * 8 7 3 26 26 H 0.96997 * 120.00047 * 179.97438 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2088 0.0000 4 6 1.4187 2.3625 -0.0005 5 6 2.4006 3.5110 -0.0074 6 6 3.7463 2.8793 0.4239 7 6 3.5430 1.4063 0.0006 8 8 4.0743 1.1870 -1.3077 9 6 4.1943 0.4778 0.9928 10 1 3.5980 -0.2491 1.5243 11 6 5.5516 0.5561 1.2222 12 7 6.1316 -0.2993 2.0355 13 14 6.5669 1.8771 0.3774 14 1 6.5001 3.1332 1.1668 15 1 7.9791 1.4288 0.2790 16 1 6.0284 2.1197 -0.9851 17 1 -0.3633 0.5138 -0.8900 18 1 -0.3633 -1.0277 0.0005 19 1 -0.3633 0.5139 0.8900 20 1 0.3447 2.4757 -0.0005 21 1 2.4809 3.9357 -1.0081 22 1 2.0954 4.2756 0.7070 23 1 3.8930 2.9594 1.5011 24 1 4.5781 3.3305 -0.1170 25 1 3.9313 0.2922 -1.6454 26 1 7.0865 -0.2444 2.1966 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000038995645.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:54:17 Heat of formation + Delta-G solvation = -60.046012 kcal Electronic energy + Delta-G solvation = -11688.350966 eV Core-core repulsion = 9540.383643 eV Total energy + Delta-G solvation = -2147.967324 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 184.089 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -39.29118 -36.75361 -33.74684 -32.28992 -28.06617 -27.92476 -26.18756 -23.29230 -20.21552 -18.78083 -17.23573 -16.67928 -15.07614 -14.97102 -14.58944 -13.79415 -13.38653 -13.00738 -12.69127 -11.95202 -11.65299 -11.32136 -11.07994 -10.89071 -10.74357 -10.50091 -10.19944 -9.80976 -8.97240 -8.67681 -8.37731 -7.57444 -6.11844 -4.21349 3.00312 3.37244 3.47746 3.67442 3.89709 4.50468 5.19672 5.38576 5.44121 5.51785 5.55379 5.77158 5.91590 6.02348 6.07769 6.38472 6.64838 6.78996 6.89398 7.03282 7.18449 7.52520 8.27035 8.34682 8.84074 9.00831 9.51394 10.98926 Molecular weight = 184.09amu Principal moments of inertia in cm(-1) A = 0.048281 B = 0.017977 C = 0.014994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 579.802607 B = 1557.165628 C = 1866.907690 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.301 6.301 3 C 0.086 3.914 4 C -0.316 4.316 5 C -0.070 4.070 6 C -0.116 4.116 7 C 0.265 3.735 8 O -0.569 6.569 9 C -0.547 4.547 10 H 0.080 0.920 11 C 0.086 3.914 12 N -0.889 5.889 13 Si 0.874 3.126 14 H -0.282 1.282 15 H -0.300 1.300 16 H -0.229 1.229 17 H 0.045 0.955 18 H 0.090 0.910 19 H 0.047 0.953 20 H 0.112 0.888 21 H 0.060 0.940 22 H 0.058 0.942 23 H 0.086 0.914 24 H 0.069 0.931 25 H 0.366 0.634 26 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.769 4.314 -4.386 9.910 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.213 6.213 3 C 0.040 3.960 4 C -0.336 4.336 5 C -0.107 4.107 6 C -0.154 4.154 7 C 0.226 3.774 8 O -0.375 6.375 9 C -0.584 4.584 10 H 0.098 0.902 11 C -0.118 4.118 12 N -0.526 5.526 13 Si 0.701 3.299 14 H -0.209 1.209 15 H -0.227 1.227 16 H -0.152 1.152 17 H 0.063 0.937 18 H 0.108 0.892 19 H 0.065 0.935 20 H 0.130 0.870 21 H 0.079 0.921 22 H 0.076 0.924 23 H 0.105 0.895 24 H 0.087 0.913 25 H 0.213 0.787 26 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -7.348 4.681 -4.241 9.690 hybrid contribution -0.004 0.121 -0.225 0.256 sum -7.352 4.803 -4.466 9.852 Atomic orbital electron populations 1.22921 0.80493 1.02754 1.00502 1.86036 1.19356 1.27889 1.88049 1.22504 0.96917 0.83376 0.93185 1.22902 0.98378 0.94798 1.17485 1.20887 0.93855 0.95886 1.00068 1.22692 0.96542 0.94565 1.01560 1.18759 0.82101 0.93532 0.83008 1.86541 1.81074 1.35564 1.34334 1.21338 0.93903 1.19472 1.23725 0.90202 1.24960 0.97684 0.95501 0.93668 1.69942 1.11181 1.35778 1.35682 0.87104 0.78170 0.81476 0.83148 1.20853 1.22701 1.15195 0.93685 0.89160 0.93474 0.87001 0.92122 0.92378 0.89523 0.91251 0.78729 0.92477 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.44 9.98 101.05 1.01 1.45 15 2 O -0.30 -6.38 10.35 -18.70 -0.19 -6.57 15 3 C 0.09 1.92 6.13 -35.89 -0.22 1.70 15 4 C -0.32 -6.20 9.80 -35.90 -0.35 -6.55 15 5 C -0.07 -1.33 6.82 -26.74 -0.18 -1.51 15 6 C -0.12 -2.61 4.50 -24.94 -0.11 -2.73 15 7 C 0.27 6.53 0.75 -91.88 -0.07 6.47 15 8 O -0.57 -13.60 10.44 -35.23 -0.37 -13.96 15 9 C -0.55 -15.72 8.70 -34.44 -0.30 -16.02 15 10 H 0.08 2.53 7.91 -52.49 -0.42 2.11 15 11 C 0.09 2.52 5.46 -17.82 -0.10 2.42 15 12 N -0.89 -27.33 13.96 55.43 0.77 -26.56 15 13 Si 0.87 22.08 23.93 -169.99 -4.07 18.01 15 14 H -0.28 -6.89 7.11 56.52 0.40 -6.49 15 15 H -0.30 -7.62 7.11 56.52 0.40 -7.21 15 16 H -0.23 -5.68 5.40 56.52 0.31 -5.37 15 17 H 0.04 0.61 7.93 -51.93 -0.41 0.19 15 18 H 0.09 1.12 8.14 -51.93 -0.42 0.70 15 19 H 0.05 0.67 7.93 -51.93 -0.41 0.26 15 20 H 0.11 1.89 7.13 -52.49 -0.37 1.52 15 21 H 0.06 1.09 8.14 -51.93 -0.42 0.66 15 22 H 0.06 0.97 8.14 -51.93 -0.42 0.54 15 23 H 0.09 1.98 7.85 -51.93 -0.41 1.58 15 24 H 0.07 1.55 5.56 -51.93 -0.29 1.26 15 25 H 0.37 7.84 9.08 45.56 0.41 8.26 15 26 H 0.27 7.66 8.31 -40.82 -0.34 7.32 15 LS Contribution 216.55 15.07 3.26 3.26 Total: -1.00 -31.96 216.55 -3.31 -35.27 By element: Atomic # 1 Polarization: 7.72 SS G_CDS: -2.39 Total: 5.32 kcal Atomic # 6 Polarization: -14.45 SS G_CDS: -0.32 Total: -14.77 kcal Atomic # 7 Polarization: -27.33 SS G_CDS: 0.77 Total: -26.56 kcal Atomic # 8 Polarization: -19.97 SS G_CDS: -0.56 Total: -20.53 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -4.07 Total: 18.01 kcal Total LS contribution 3.26 Total: 3.26 kcal Total: -31.96 -3.31 -35.27 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000038995645.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.774 kcal (2) G-P(sol) polarization free energy of solvation -31.962 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.736 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.311 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.272 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds