Wall clock time and date at job start Mon Mar 30 2020 01:54:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35665 * 116.99933 * 2 1 4 4 C 1.31264 * 124.50997 * 359.97438 * 3 2 1 5 5 C 1.51103 * 110.98449 * 180.28922 * 4 3 2 6 6 C 1.54798 * 104.67784 * 343.10620 * 5 4 3 7 7 C 1.51107 * 124.51130 * 179.97438 * 3 2 1 8 8 O 1.42897 * 110.37853 * 77.64769 * 7 3 2 9 9 C 1.50701 * 110.37479 * 315.40639 * 7 3 2 10 10 H 1.07995 * 120.00514 * 4.46127 * 9 7 3 11 11 C 1.37879 * 119.99598 * 184.45980 * 9 7 3 12 12 N 1.31518 * 119.99958 * 183.53252 * 11 9 7 13 13 Si 1.86797 * 120.00155 * 3.52283 * 11 9 7 14 14 H 1.48506 * 109.46990 * 84.77150 * 13 11 9 15 15 H 1.48497 * 109.47504 * 204.76921 * 13 11 9 16 16 H 1.48499 * 109.47371 * 324.77531 * 13 11 9 17 17 H 1.08999 * 109.47195 * 60.00055 * 1 2 3 18 18 H 1.09004 * 109.46865 * 180.02562 * 1 2 3 19 19 H 1.09000 * 109.47143 * 300.00259 * 1 2 3 20 20 H 1.08001 * 124.50826 * 0.02562 * 4 3 2 21 21 H 1.09000 * 110.38140 * 102.05929 * 5 4 3 22 22 H 1.09001 * 110.37889 * 224.42184 * 5 4 3 23 23 H 1.09003 * 111.24771 * 267.01305 * 6 5 4 24 24 H 1.08996 * 110.86597 * 143.06936 * 6 5 4 25 25 H 0.96702 * 114.00148 * 298.55154 * 8 7 3 26 26 H 0.96997 * 120.00047 * 179.97438 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2088 0.0000 4 6 1.4187 2.3625 -0.0005 5 6 2.4006 3.5110 -0.0074 6 6 3.7463 2.8793 0.4239 7 6 3.5430 1.4063 0.0006 8 8 4.0743 1.1870 -1.3077 9 6 4.1943 0.4778 0.9928 10 1 3.5980 -0.2491 1.5243 11 6 5.5516 0.5561 1.2222 12 7 6.1316 -0.2993 2.0355 13 14 6.5669 1.8771 0.3774 14 1 6.5001 3.1332 1.1668 15 1 7.9791 1.4288 0.2790 16 1 6.0284 2.1197 -0.9851 17 1 -0.3633 0.5138 -0.8900 18 1 -0.3633 -1.0277 0.0005 19 1 -0.3633 0.5139 0.8900 20 1 0.3447 2.4757 -0.0005 21 1 2.4809 3.9357 -1.0081 22 1 2.0954 4.2756 0.7070 23 1 3.8930 2.9594 1.5011 24 1 4.5781 3.3305 -0.1170 25 1 3.9313 0.2922 -1.6454 26 1 7.0865 -0.2444 2.1966 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000038995645.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:54:17 Heat of formation + Delta-G solvation = -85.514428 kcal Electronic energy + Delta-G solvation = -11689.455360 eV Core-core repulsion = 9540.383643 eV Total energy + Delta-G solvation = -2149.071717 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 184.089 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -40.89918 -38.38729 -35.48261 -34.49925 -29.95380 -29.39195 -27.67429 -25.21331 -21.96160 -20.36847 -19.19255 -18.43334 -16.98592 -16.38342 -16.28644 -15.54910 -15.09228 -14.77470 -14.45780 -13.73674 -13.46009 -13.06616 -12.65240 -12.50218 -12.44922 -12.19672 -11.95449 -11.53519 -10.98692 -10.83447 -10.33085 -9.11517 -8.36461 -6.50210 1.35573 1.38338 1.47523 1.66445 2.39446 2.49380 3.00151 3.67824 3.87695 4.26762 4.36393 4.40976 4.42177 4.50457 4.70964 4.90492 5.05511 5.09969 5.34313 5.39070 5.49350 5.53844 6.10640 6.57754 6.82391 7.05778 7.28329 8.78487 Molecular weight = 184.09amu Principal moments of inertia in cm(-1) A = 0.048281 B = 0.017977 C = 0.014994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 579.802607 B = 1557.165628 C = 1866.907690 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.336 6.336 3 C 0.048 3.952 4 C -0.288 4.288 5 C -0.067 4.067 6 C -0.123 4.123 7 C 0.256 3.744 8 O -0.571 6.571 9 C -0.551 4.551 10 H 0.031 0.969 11 C 0.033 3.967 12 N -0.938 5.938 13 Si 0.939 3.061 14 H -0.265 1.265 15 H -0.303 1.303 16 H -0.219 1.219 17 H 0.065 0.935 18 H 0.112 0.888 19 H 0.055 0.945 20 H 0.145 0.855 21 H 0.080 0.920 22 H 0.089 0.911 23 H 0.074 0.926 24 H 0.072 0.928 25 H 0.372 0.628 26 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.958 6.442 -5.550 12.351 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.250 6.250 3 C 0.002 3.998 4 C -0.308 4.308 5 C -0.104 4.104 6 C -0.160 4.160 7 C 0.217 3.783 8 O -0.379 6.379 9 C -0.588 4.588 10 H 0.049 0.951 11 C -0.167 4.167 12 N -0.577 5.577 13 Si 0.763 3.237 14 H -0.191 1.191 15 H -0.231 1.231 16 H -0.141 1.141 17 H 0.083 0.917 18 H 0.130 0.870 19 H 0.073 0.927 20 H 0.163 0.837 21 H 0.098 0.902 22 H 0.107 0.893 23 H 0.093 0.907 24 H 0.091 0.909 25 H 0.220 0.780 26 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -8.566 6.815 -5.409 12.210 hybrid contribution 0.254 -0.635 0.164 0.703 sum -8.313 6.180 -5.245 11.611 Atomic orbital electron populations 1.23246 0.77415 1.04821 1.01770 1.85954 1.22540 1.27966 1.88501 1.22246 0.95995 0.84760 0.96771 1.23286 1.00088 0.93770 1.13657 1.20967 0.91301 0.96142 1.01949 1.22667 0.99073 0.93360 1.00920 1.18765 0.84001 0.93847 0.81729 1.86472 1.81447 1.36164 1.33768 1.21554 0.93826 1.19306 1.24155 0.95091 1.25828 0.98930 0.97632 0.94316 1.70078 1.11672 1.38037 1.37905 0.86084 0.75952 0.79076 0.82550 1.19071 1.23055 1.14137 0.91683 0.86978 0.92659 0.83708 0.90158 0.89263 0.90726 0.90937 0.77972 0.92300 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.61 9.98 113.37 1.13 1.74 15 2 O -0.34 -14.08 10.35 -89.81 -0.93 -15.01 15 3 C 0.05 2.07 6.13 25.51 0.16 2.23 15 4 C -0.29 -10.28 9.80 25.51 0.25 -10.03 15 5 C -0.07 -2.25 6.82 30.59 0.21 -2.04 15 6 C -0.12 -5.24 4.50 31.75 0.14 -5.10 15 7 C 0.26 12.43 0.75 -11.61 -0.01 12.42 15 8 O -0.57 -26.65 10.44 -148.98 -1.56 -28.20 15 9 C -0.55 -32.53 8.70 25.60 0.22 -32.30 15 10 H 0.03 2.07 7.91 -2.91 -0.02 2.04 15 11 C 0.03 1.93 5.46 84.65 0.46 2.40 15 12 N -0.94 -59.53 13.96 21.45 0.30 -59.23 15 13 Si 0.94 45.70 23.93 68.60 1.64 47.34 15 14 H -0.27 -12.10 7.11 99.48 0.71 -11.39 15 15 H -0.30 -14.76 7.11 99.48 0.71 -14.06 15 16 H -0.22 -10.21 5.40 99.48 0.54 -9.68 15 17 H 0.06 1.54 7.93 -2.39 -0.02 1.52 15 18 H 0.11 2.56 8.14 -2.39 -0.02 2.54 15 19 H 0.05 1.43 7.93 -2.39 -0.02 1.41 15 20 H 0.15 4.16 7.13 -2.91 -0.02 4.14 15 21 H 0.08 2.46 8.14 -2.39 -0.02 2.44 15 22 H 0.09 2.50 8.14 -2.39 -0.02 2.49 15 23 H 0.07 3.31 7.85 -2.39 -0.02 3.29 15 24 H 0.07 3.02 5.56 -2.39 -0.01 3.00 15 25 H 0.37 15.92 9.08 -74.06 -0.67 15.25 15 26 H 0.27 15.90 8.31 -92.71 -0.77 15.13 15 Total: -1.00 -70.01 216.55 2.36 -67.65 By element: Atomic # 1 Polarization: 17.80 SS G_CDS: 0.34 Total: 18.13 kcal Atomic # 6 Polarization: -33.25 SS G_CDS: 2.57 Total: -30.68 kcal Atomic # 7 Polarization: -59.53 SS G_CDS: 0.30 Total: -59.23 kcal Atomic # 8 Polarization: -40.73 SS G_CDS: -2.48 Total: -43.21 kcal Atomic # 14 Polarization: 45.70 SS G_CDS: 1.64 Total: 47.34 kcal Total: -70.01 2.36 -67.65 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000038995645.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.869 kcal (2) G-P(sol) polarization free energy of solvation -70.005 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.874 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.359 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.646 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.514 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds