Wall clock time and date at job start Mon Mar 30 2020 01:57:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48500 * 109.47353 * 89.99665 * 3 2 1 5 5 H 1.48501 * 109.47293 * 210.00115 * 3 2 1 6 6 H 1.48504 * 109.46680 * 329.99913 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99535 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99902 * 359.97438 * 7 2 1 10 10 N 1.46900 * 109.40210 * 59.82833 * 9 7 2 11 11 C 1.53072 * 109.40347 * 179.57258 * 9 7 2 12 12 C 1.53357 * 108.41662 * 169.03708 * 11 9 7 13 13 C 1.52927 * 108.66256 * 292.44688 * 12 11 9 14 14 N 1.45754 * 110.48826 * 50.76265 * 13 12 11 15 15 C 1.33356 * 124.10312 * 340.94736 * 14 13 12 16 16 O 1.21284 * 118.24058 * 182.20177 * 15 14 13 17 17 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 18 18 H 1.00903 * 110.99876 * 299.99973 * 10 9 7 19 19 H 1.00899 * 110.99987 * 63.95640 * 10 9 7 20 20 H 1.09004 * 109.67278 * 288.76740 * 11 9 7 21 21 H 1.09000 * 109.66898 * 49.29173 * 11 9 7 22 22 H 1.08998 * 109.59938 * 172.69891 * 12 11 9 23 23 H 1.09002 * 109.75359 * 52.28671 * 12 11 9 24 24 H 1.08997 * 109.29657 * 290.44805 * 13 12 11 25 25 H 1.09002 * 109.12873 * 170.96722 * 13 12 11 26 26 H 0.96991 * 117.94331 * 160.92080 * 14 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 1.4001 5 1 3.5468 1.4401 -0.7001 6 1 1.4467 2.6526 -0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 7 0.4035 -2.5733 -1.1981 11 6 2.2471 -3.6615 -0.0119 12 6 1.4795 -4.9599 0.2649 13 6 0.9654 -4.9270 1.7048 14 7 0.2579 -3.6797 1.9654 15 6 0.3887 -2.5773 1.2265 16 8 -0.2210 -1.5846 1.5637 17 1 -0.4850 0.8401 0.0004 18 1 -0.2617 -1.8149 -1.2177 19 1 0.9636 -2.5849 -2.0373 20 1 2.7299 -3.7214 -0.9874 21 1 2.9994 -3.5075 0.7616 22 1 2.1450 -5.8131 0.1336 23 1 0.6376 -5.0439 -0.4223 24 1 1.8084 -5.0131 2.3903 25 1 0.2868 -5.7656 1.8610 26 1 -0.3463 -3.6497 2.7236 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000039090962.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:57:36 Heat of formation + Delta-G solvation = -24.827899 kcal Electronic energy + Delta-G solvation = -11923.981858 eV Core-core repulsion = 9809.834457 eV Total energy + Delta-G solvation = -2114.147401 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 184.095 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -38.95249 -35.07779 -34.21539 -31.34413 -29.76043 -26.97880 -24.99310 -22.01377 -21.49038 -17.66363 -16.56509 -15.90792 -15.20932 -14.29202 -14.05368 -13.56435 -13.11529 -12.71952 -12.26772 -12.00864 -11.45641 -11.05001 -10.86446 -10.53213 -10.33292 -10.14415 -10.00849 -9.30935 -8.48893 -8.09994 -7.83268 -7.03582 -5.84607 -4.02125 3.32985 3.40024 3.41393 4.32888 4.46146 4.54825 5.37128 5.52539 5.60485 5.78553 6.09760 6.22542 6.35994 6.39835 6.59383 6.87961 6.99672 7.28487 7.88528 7.99726 8.09413 8.64576 8.72278 8.99800 9.13655 9.63748 9.97189 11.08909 Molecular weight = 184.10amu Principal moments of inertia in cm(-1) A = 0.059393 B = 0.016512 C = 0.015264 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 471.321028 B = 1695.358302 C = 1833.923986 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.820 5.820 2 C 0.081 3.919 3 Si 0.890 3.110 4 H -0.282 1.282 5 H -0.275 1.275 6 H -0.287 1.287 7 C -0.577 4.577 8 H 0.057 0.943 9 C 0.235 3.765 10 N -0.841 5.841 11 C -0.104 4.104 12 C -0.131 4.131 13 C 0.123 3.877 14 N -0.747 5.747 15 C 0.520 3.480 16 O -0.496 6.496 17 H 0.258 0.742 18 H 0.359 0.641 19 H 0.319 0.681 20 H 0.056 0.944 21 H 0.054 0.946 22 H 0.059 0.941 23 H 0.078 0.922 24 H 0.044 0.956 25 H 0.054 0.946 26 H 0.375 0.625 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.203 -7.661 0.449 7.984 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.454 5.454 2 C -0.129 4.129 3 Si 0.718 3.282 4 H -0.208 1.208 5 H -0.200 1.200 6 H -0.213 1.213 7 C -0.616 4.616 8 H 0.075 0.925 9 C 0.141 3.859 10 N -0.374 5.374 11 C -0.142 4.142 12 C -0.169 4.169 13 C -0.003 4.003 14 N -0.404 5.404 15 C 0.306 3.694 16 O -0.365 6.365 17 H 0.068 0.932 18 H 0.176 0.824 19 H 0.129 0.871 20 H 0.075 0.925 21 H 0.073 0.927 22 H 0.077 0.923 23 H 0.096 0.904 24 H 0.062 0.938 25 H 0.072 0.928 26 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges 1.568 -7.652 0.722 7.844 hybrid contribution 0.769 1.735 0.269 1.917 sum 2.337 -5.917 0.990 6.439 Atomic orbital electron populations 1.69985 1.05487 1.25964 1.43948 1.25001 0.94750 0.98994 0.94140 0.86651 0.79813 0.83700 0.78047 1.20783 1.20043 1.21272 1.21381 0.92973 0.90308 1.56943 0.92492 1.18131 0.88317 0.92692 0.86734 1.59325 1.20954 1.53884 1.03217 1.21697 0.97852 0.94042 1.00659 1.21809 1.00866 0.98288 0.95910 1.21064 0.95510 0.86646 0.97048 1.46053 1.48404 1.12650 1.33329 1.21289 0.81499 0.81083 0.85485 1.90754 1.44320 1.32617 1.68847 0.93156 0.82442 0.87092 0.92498 0.92749 0.92252 0.90359 0.93822 0.92769 0.79211 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -24.13 8.48 55.43 0.47 -23.66 15 2 C 0.08 2.29 4.86 -17.82 -0.09 2.20 15 3 Si 0.89 21.93 29.54 -169.99 -5.02 16.91 15 4 H -0.28 -7.06 7.11 56.52 0.40 -6.66 15 5 H -0.28 -6.63 7.11 56.52 0.40 -6.22 15 6 H -0.29 -6.96 7.11 56.52 0.40 -6.56 15 7 C -0.58 -16.06 8.14 -34.44 -0.28 -16.34 15 8 H 0.06 1.57 7.74 -52.49 -0.41 1.17 15 9 C 0.24 5.87 0.60 -134.12 -0.08 5.79 15 10 N -0.84 -20.15 8.38 -1.32 -0.01 -20.16 15 11 C -0.10 -2.13 4.86 -26.51 -0.13 -2.26 15 12 C -0.13 -2.21 6.00 -26.58 -0.16 -2.37 15 13 C 0.12 2.01 7.17 -4.48 -0.03 1.98 15 14 N -0.75 -15.45 5.45 -61.38 -0.33 -15.78 15 15 C 0.52 13.46 6.81 -11.87 -0.08 13.38 15 16 O -0.50 -14.91 13.71 5.55 0.08 -14.83 15 17 H 0.26 7.37 8.31 -40.82 -0.34 7.03 15 18 H 0.36 9.56 6.89 -39.29 -0.27 9.29 15 19 H 0.32 7.08 8.93 -39.29 -0.35 6.73 15 20 H 0.06 1.10 8.08 -51.93 -0.42 0.68 15 21 H 0.05 1.12 8.09 -51.93 -0.42 0.70 15 22 H 0.06 0.82 8.14 -51.93 -0.42 0.39 15 23 H 0.08 1.41 7.73 -51.93 -0.40 1.01 15 24 H 0.04 0.66 8.14 -51.93 -0.42 0.23 15 25 H 0.05 0.74 8.14 -51.93 -0.42 0.31 15 26 H 0.37 7.14 8.80 -40.82 -0.36 6.78 15 LS Contribution 214.31 15.07 3.23 3.23 Total: -1.00 -31.57 214.31 -5.47 -37.05 By element: Atomic # 1 Polarization: 17.91 SS G_CDS: -3.03 Total: 14.88 kcal Atomic # 6 Polarization: 3.22 SS G_CDS: -0.85 Total: 2.37 kcal Atomic # 7 Polarization: -59.74 SS G_CDS: 0.12 Total: -59.61 kcal Atomic # 8 Polarization: -14.91 SS G_CDS: 0.08 Total: -14.83 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.91 kcal Total LS contribution 3.23 Total: 3.23 kcal Total: -31.57 -5.47 -37.05 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000039090962.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.218 kcal (2) G-P(sol) polarization free energy of solvation -31.575 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.357 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.471 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.046 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.828 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds