Wall clock time and date at job start Mon Mar 30 2020 01:57:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48500 * 109.47353 * 89.99665 * 3 2 1 5 5 H 1.48501 * 109.47293 * 210.00115 * 3 2 1 6 6 H 1.48504 * 109.46680 * 329.99913 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99535 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99902 * 359.97438 * 7 2 1 10 10 N 1.46900 * 109.40210 * 59.82833 * 9 7 2 11 11 C 1.53072 * 109.40347 * 179.57258 * 9 7 2 12 12 C 1.53357 * 108.41662 * 169.03708 * 11 9 7 13 13 C 1.52927 * 108.66256 * 292.44688 * 12 11 9 14 14 N 1.45754 * 110.48826 * 50.76265 * 13 12 11 15 15 C 1.33356 * 124.10312 * 340.94736 * 14 13 12 16 16 O 1.21284 * 118.24058 * 182.20177 * 15 14 13 17 17 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 18 18 H 1.00903 * 110.99876 * 299.99973 * 10 9 7 19 19 H 1.00899 * 110.99987 * 63.95640 * 10 9 7 20 20 H 1.09004 * 109.67278 * 288.76740 * 11 9 7 21 21 H 1.09000 * 109.66898 * 49.29173 * 11 9 7 22 22 H 1.08998 * 109.59938 * 172.69891 * 12 11 9 23 23 H 1.09002 * 109.75359 * 52.28671 * 12 11 9 24 24 H 1.08997 * 109.29657 * 290.44805 * 13 12 11 25 25 H 1.09002 * 109.12873 * 170.96722 * 13 12 11 26 26 H 0.96991 * 117.94331 * 160.92080 * 14 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 1.4001 5 1 3.5468 1.4401 -0.7001 6 1 1.4467 2.6526 -0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 7 0.4035 -2.5733 -1.1981 11 6 2.2471 -3.6615 -0.0119 12 6 1.4795 -4.9599 0.2649 13 6 0.9654 -4.9270 1.7048 14 7 0.2579 -3.6797 1.9654 15 6 0.3887 -2.5773 1.2265 16 8 -0.2210 -1.5846 1.5637 17 1 -0.4850 0.8401 0.0004 18 1 -0.2617 -1.8149 -1.2177 19 1 0.9636 -2.5849 -2.0373 20 1 2.7299 -3.7214 -0.9874 21 1 2.9994 -3.5075 0.7616 22 1 2.1450 -5.8131 0.1336 23 1 0.6376 -5.0439 -0.4223 24 1 1.8084 -5.0131 2.3903 25 1 0.2868 -5.7656 1.8610 26 1 -0.3463 -3.6497 2.7236 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000039090962.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:57:36 Heat of formation + Delta-G solvation = -50.647571 kcal Electronic energy + Delta-G solvation = -11925.101483 eV Core-core repulsion = 9809.834457 eV Total energy + Delta-G solvation = -2115.267026 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 184.095 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -40.76237 -36.89069 -36.07241 -33.34155 -31.45485 -28.79358 -26.88160 -23.83062 -23.10725 -19.40714 -18.50339 -17.69142 -17.00493 -16.29092 -15.68349 -15.43921 -14.86153 -14.46278 -13.98223 -13.72971 -13.27286 -12.89796 -12.82363 -12.41294 -12.04634 -11.83292 -11.73718 -11.08162 -10.60543 -10.04482 -9.53733 -9.01594 -7.94505 -6.18290 1.36344 1.38638 1.47274 2.34464 2.51897 2.86935 3.27213 4.15861 4.23800 4.35370 4.45371 4.76555 4.81360 4.98266 5.16074 5.33011 5.37353 5.63997 5.74949 6.08597 6.36933 6.63377 6.86496 6.96101 7.18395 7.50795 8.07850 8.95415 Molecular weight = 184.10amu Principal moments of inertia in cm(-1) A = 0.059393 B = 0.016512 C = 0.015264 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 471.321028 B = 1695.358302 C = 1833.923986 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.842 5.842 2 C 0.033 3.967 3 Si 0.947 3.053 4 H -0.289 1.289 5 H -0.265 1.265 6 H -0.282 1.282 7 C -0.594 4.594 8 H 0.051 0.949 9 C 0.220 3.780 10 N -0.830 5.830 11 C -0.101 4.101 12 C -0.124 4.124 13 C 0.113 3.887 14 N -0.740 5.740 15 C 0.510 3.490 16 O -0.552 6.552 17 H 0.252 0.748 18 H 0.342 0.658 19 H 0.327 0.673 20 H 0.064 0.936 21 H 0.051 0.949 22 H 0.102 0.898 23 H 0.066 0.934 24 H 0.066 0.934 25 H 0.093 0.907 26 H 0.383 0.617 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.159 -9.281 0.549 9.819 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.476 5.476 2 C -0.174 4.174 3 Si 0.773 3.227 4 H -0.216 1.216 5 H -0.189 1.189 6 H -0.208 1.208 7 C -0.634 4.634 8 H 0.069 0.931 9 C 0.126 3.874 10 N -0.361 5.361 11 C -0.140 4.140 12 C -0.162 4.162 13 C -0.010 4.010 14 N -0.394 5.394 15 C 0.297 3.703 16 O -0.426 6.426 17 H 0.061 0.939 18 H 0.157 0.843 19 H 0.137 0.863 20 H 0.082 0.918 21 H 0.069 0.931 22 H 0.120 0.880 23 H 0.085 0.915 24 H 0.084 0.916 25 H 0.111 0.889 26 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges 2.558 -9.347 0.818 9.725 hybrid contribution 0.495 2.149 0.259 2.220 sum 3.053 -7.198 1.077 7.892 Atomic orbital electron populations 1.70157 1.06636 1.25975 1.44854 1.25709 0.95485 1.02048 0.94155 0.85760 0.79122 0.80284 0.77506 1.21563 1.18904 1.20776 1.21760 0.92933 0.92076 1.56591 0.93080 1.18305 0.89042 0.93424 0.86665 1.59320 1.20568 1.52653 1.03541 1.21634 0.97012 0.94219 1.01105 1.21796 1.00778 0.97710 0.95878 1.21457 0.96851 0.85445 0.97258 1.45883 1.48072 1.12967 1.32507 1.21448 0.81168 0.81629 0.86063 1.90718 1.46527 1.35019 1.70362 0.93854 0.84305 0.86263 0.91770 0.93069 0.87983 0.91520 0.91617 0.88921 0.78299 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -50.59 8.48 21.45 0.18 -50.40 15 2 C 0.03 1.88 4.86 84.66 0.41 2.29 15 3 Si 0.95 45.51 29.54 68.60 2.03 47.53 15 4 H -0.29 -14.13 7.11 99.48 0.71 -13.42 15 5 H -0.26 -12.11 7.11 99.48 0.71 -11.40 15 6 H -0.28 -13.21 7.11 99.48 0.71 -12.51 15 7 C -0.59 -33.16 8.14 25.60 0.21 -32.95 15 8 H 0.05 2.82 7.74 -2.91 -0.02 2.80 15 9 C 0.22 10.85 0.60 1.89 0.00 10.85 15 10 N -0.83 -39.60 8.38 -158.09 -1.32 -40.92 15 11 C -0.10 -3.92 4.86 30.74 0.15 -3.77 15 12 C -0.12 -3.71 6.00 30.69 0.18 -3.53 15 13 C 0.11 3.24 7.17 86.50 0.62 3.86 15 14 N -0.74 -29.15 5.45 -467.30 -2.55 -31.70 15 15 C 0.51 26.26 6.81 87.71 0.60 26.85 15 16 O -0.55 -33.78 13.71 -3.04 -0.04 -33.82 15 17 H 0.25 14.75 8.31 -92.71 -0.77 13.98 15 18 H 0.34 18.54 6.89 -89.69 -0.62 17.92 15 19 H 0.33 14.36 8.93 -89.69 -0.80 13.56 15 20 H 0.06 2.34 8.08 -2.39 -0.02 2.32 15 21 H 0.05 1.99 8.09 -2.39 -0.02 1.97 15 22 H 0.10 2.25 8.14 -2.39 -0.02 2.23 15 23 H 0.07 2.18 7.73 -2.39 -0.02 2.17 15 24 H 0.07 1.66 8.14 -2.39 -0.02 1.64 15 25 H 0.09 2.03 8.14 -2.39 -0.02 2.01 15 26 H 0.38 13.98 8.80 -92.72 -0.82 13.17 15 Total: -1.00 -68.73 214.31 -0.55 -69.29 By element: Atomic # 1 Polarization: 37.45 SS G_CDS: -1.02 Total: 36.43 kcal Atomic # 6 Polarization: 1.43 SS G_CDS: 2.17 Total: 3.60 kcal Atomic # 7 Polarization: -119.34 SS G_CDS: -3.69 Total: -123.03 kcal Atomic # 8 Polarization: -33.78 SS G_CDS: -0.04 Total: -33.82 kcal Atomic # 14 Polarization: 45.51 SS G_CDS: 2.03 Total: 47.53 kcal Total: -68.73 -0.55 -69.29 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000039090962.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.641 kcal (2) G-P(sol) polarization free energy of solvation -68.734 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.093 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.555 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.289 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.648 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds