Wall clock time and date at job start Mon Mar 30 2020 01:57:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48496 * 109.47341 * 179.97438 * 3 2 1 5 5 H 1.48508 * 109.46983 * 299.99446 * 3 2 1 6 6 H 1.48503 * 109.47491 * 59.99259 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 N 1.46899 * 109.40088 * 299.89369 * 9 7 2 11 11 C 1.53066 * 109.40078 * 180.14730 * 9 7 2 12 12 C 1.53319 * 108.43759 * 190.97593 * 11 9 7 13 13 C 1.52920 * 108.68438 * 67.51186 * 12 11 9 14 14 N 1.45759 * 110.48900 * 309.25499 * 13 12 11 15 15 C 1.33350 * 124.10197 * 19.09629 * 14 13 12 16 16 O 1.21280 * 118.24592 * 177.75556 * 15 14 13 17 17 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 18 18 H 1.00898 * 111.00264 * 59.99255 * 10 9 7 19 19 H 1.00897 * 111.00300 * 183.95555 * 10 9 7 20 20 H 1.08999 * 109.67482 * 310.70663 * 11 9 7 21 21 H 1.09003 * 109.67562 * 71.23479 * 11 9 7 22 22 H 1.08996 * 109.59205 * 307.75574 * 12 11 9 23 23 H 1.09004 * 109.60630 * 187.27429 * 12 11 9 24 24 H 1.09003 * 109.30425 * 188.94424 * 13 12 11 25 25 H 1.09000 * 109.13951 * 69.46140 * 13 12 11 26 26 H 0.96989 * 117.94815 * 199.07663 * 14 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3462 0.0006 5 1 1.8906 2.3963 -1.2126 6 1 1.8905 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 7 0.4037 -2.5789 1.1921 11 6 2.2469 -3.6615 0.0003 12 6 1.4801 -4.9586 -0.2826 13 6 0.9646 -4.9191 -1.7218 14 7 0.2564 -3.6707 -1.9760 15 6 0.3882 -2.5716 -1.2325 16 8 -0.2216 -1.5773 -1.5648 17 1 -0.4850 0.8401 -0.0004 18 1 -0.2614 -1.8206 1.2156 19 1 -0.0635 -3.4716 1.2458 20 1 2.9990 -3.5040 -0.7728 21 1 2.7301 -3.7260 0.9752 22 1 0.6386 -5.0431 0.4050 23 1 2.1460 -5.8123 -0.1560 24 1 0.2872 -5.7572 -1.8851 25 1 1.8091 -4.9999 -2.4062 26 1 -0.3484 -3.6373 -2.7335 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000039090963.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:57:38 Heat of formation + Delta-G solvation = -47.771658 kcal Electronic energy + Delta-G solvation = -11936.557080 eV Core-core repulsion = 9821.414764 eV Total energy + Delta-G solvation = -2115.142317 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 184.095 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -40.88975 -36.97036 -35.94572 -33.37625 -31.49387 -29.02475 -26.87593 -23.69281 -23.18136 -19.48657 -18.38427 -17.74055 -16.99728 -16.38531 -15.86603 -15.56803 -14.86255 -14.64898 -13.96654 -13.78409 -13.27184 -12.92007 -12.78445 -12.30998 -11.91094 -11.84735 -11.59812 -10.93271 -10.71896 -10.22761 -9.58722 -8.94599 -7.94992 -6.09778 1.40284 1.41504 1.52378 2.33171 2.51288 2.83493 3.31409 4.09799 4.18021 4.30751 4.48233 4.56904 4.77071 4.92383 4.98691 5.22235 5.42065 5.49217 5.80940 6.16464 6.31596 6.62486 6.86055 6.92578 7.24914 7.55356 8.02930 9.02738 Molecular weight = 184.10amu Principal moments of inertia in cm(-1) A = 0.059737 B = 0.016478 C = 0.015278 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 468.608696 B = 1698.817177 C = 1832.256941 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.849 5.849 2 C 0.032 3.968 3 Si 0.950 3.050 4 H -0.266 1.266 5 H -0.292 1.292 6 H -0.277 1.277 7 C -0.551 4.551 8 H 0.055 0.945 9 C 0.229 3.771 10 N -0.822 5.822 11 C -0.103 4.103 12 C -0.130 4.130 13 C 0.112 3.888 14 N -0.742 5.742 15 C 0.465 3.535 16 O -0.549 6.549 17 H 0.250 0.750 18 H 0.346 0.654 19 H 0.309 0.691 20 H 0.054 0.946 21 H 0.065 0.935 22 H 0.064 0.936 23 H 0.109 0.891 24 H 0.096 0.904 25 H 0.066 0.934 26 H 0.380 0.620 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.107 -10.352 -1.632 10.689 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.484 5.484 2 C -0.174 4.174 3 Si 0.777 3.223 4 H -0.190 1.190 5 H -0.219 1.219 6 H -0.203 1.203 7 C -0.590 4.590 8 H 0.073 0.927 9 C 0.134 3.866 10 N -0.355 5.355 11 C -0.141 4.141 12 C -0.168 4.168 13 C -0.012 4.012 14 N -0.397 5.397 15 C 0.250 3.750 16 O -0.423 6.423 17 H 0.059 0.941 18 H 0.162 0.838 19 H 0.121 0.879 20 H 0.072 0.928 21 H 0.084 0.916 22 H 0.082 0.918 23 H 0.127 0.873 24 H 0.114 0.886 25 H 0.084 0.916 26 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges 2.450 -9.604 -1.176 9.981 hybrid contribution -0.818 1.066 -1.121 1.749 sum 1.632 -8.538 -2.297 8.991 Atomic orbital electron populations 1.70113 1.06765 1.25748 1.45771 1.25695 0.95564 1.02145 0.93955 0.85647 0.79289 0.80317 0.77067 1.19023 1.21860 1.20309 1.21030 0.92427 0.90603 1.54903 0.92712 1.18450 0.89846 0.95281 0.82977 1.59530 1.29487 1.06314 1.40135 1.21656 0.97493 0.93644 1.01348 1.21908 1.00765 0.98371 0.95727 1.21485 0.97029 0.85446 0.97204 1.46129 1.47929 1.13315 1.32362 1.23106 0.82718 0.81840 0.87301 1.90734 1.46800 1.34568 1.70164 0.94072 0.83768 0.87940 0.92775 0.91604 0.91783 0.87298 0.88565 0.91576 0.78615 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -51.61 8.48 21.45 0.18 -51.42 15 2 C 0.03 1.88 4.86 84.66 0.41 2.29 15 3 Si 0.95 46.43 29.54 68.60 2.03 48.45 15 4 H -0.27 -12.47 7.11 99.48 0.71 -11.77 15 5 H -0.29 -14.40 7.11 99.48 0.71 -13.69 15 6 H -0.28 -13.11 7.11 99.48 0.71 -12.40 15 7 C -0.55 -31.52 8.15 25.60 0.21 -31.31 15 8 H 0.05 3.10 7.74 -2.91 -0.02 3.07 15 9 C 0.23 11.33 0.67 1.89 0.00 11.33 15 10 N -0.82 -39.75 8.83 -158.08 -1.40 -41.15 15 11 C -0.10 -3.99 4.91 30.72 0.15 -3.84 15 12 C -0.13 -3.63 5.98 30.67 0.18 -3.45 15 13 C 0.11 2.99 7.17 86.49 0.62 3.61 15 14 N -0.74 -27.99 5.45 -467.31 -2.55 -30.53 15 15 C 0.47 23.34 6.80 87.71 0.60 23.94 15 16 O -0.55 -33.14 13.69 -3.03 -0.04 -33.19 15 17 H 0.25 14.77 8.31 -92.70 -0.77 14.00 15 18 H 0.35 18.92 6.91 -89.70 -0.62 18.30 15 19 H 0.31 12.86 7.34 -89.70 -0.66 12.21 15 20 H 0.05 2.10 8.09 -2.39 -0.02 2.08 15 21 H 0.07 2.53 8.14 -2.39 -0.02 2.51 15 22 H 0.06 1.83 6.55 -2.39 -0.02 1.81 15 23 H 0.11 2.21 8.14 -2.38 -0.02 2.19 15 24 H 0.10 1.89 8.14 -2.39 -0.02 1.87 15 25 H 0.07 1.59 8.14 -2.39 -0.02 1.57 15 26 H 0.38 13.37 8.80 -92.72 -0.82 12.56 15 Total: -1.00 -70.48 212.14 -0.48 -70.96 By element: Atomic # 1 Polarization: 35.19 SS G_CDS: -0.88 Total: 34.31 kcal Atomic # 6 Polarization: 0.40 SS G_CDS: 2.17 Total: 2.57 kcal Atomic # 7 Polarization: -119.35 SS G_CDS: -3.76 Total: -123.11 kcal Atomic # 8 Polarization: -33.14 SS G_CDS: -0.04 Total: -33.19 kcal Atomic # 14 Polarization: 46.43 SS G_CDS: 2.03 Total: 48.45 kcal Total: -70.48 -0.48 -70.96 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000039090963.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.185 kcal (2) G-P(sol) polarization free energy of solvation -70.475 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.290 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.482 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.957 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds