Wall clock time and date at job start Mon Mar 30 2020 02:17:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31523 * 1 3 3 Si 1.86800 * 119.99687 * 2 1 4 4 H 1.48500 * 109.47210 * 269.99666 * 3 2 1 5 5 H 1.48504 * 109.47424 * 29.99897 * 3 2 1 6 6 H 1.48502 * 109.46888 * 149.99987 * 3 2 1 7 7 C 1.37871 * 119.99908 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00483 * 0.02562 * 7 2 1 9 9 C 1.50701 * 119.99694 * 179.72112 * 7 2 1 10 10 C 1.53004 * 109.47211 * 180.27574 * 9 7 2 11 11 H 1.09007 * 109.46773 * 55.00766 * 10 9 7 12 12 C 1.52992 * 109.47243 * 295.00691 * 10 9 7 13 13 C 1.53004 * 109.46904 * 179.97438 * 12 10 9 14 14 C 1.52995 * 109.47202 * 59.99994 * 13 12 10 15 15 C 1.53000 * 109.47118 * 299.99636 * 14 13 12 16 16 C 1.52995 * 109.47161 * 175.00101 * 10 9 7 17 17 H 1.09001 * 109.47261 * 300.00166 * 16 10 9 18 18 O 1.42904 * 109.47054 * 60.00577 * 16 10 9 19 19 H 0.96995 * 120.00181 * 0.02562 * 1 2 3 20 20 H 1.09000 * 109.47827 * 300.28170 * 9 7 2 21 21 H 1.09007 * 109.47098 * 60.28447 * 9 7 2 22 22 H 1.09000 * 109.46966 * 299.99721 * 12 10 9 23 23 H 1.09003 * 109.47367 * 59.99799 * 12 10 9 24 24 H 1.09001 * 109.46771 * 299.99445 * 13 12 10 25 25 H 1.09006 * 109.47088 * 180.02562 * 13 12 10 26 26 H 1.09004 * 109.46952 * 179.97438 * 14 13 12 27 27 H 1.09000 * 109.47246 * 59.99758 * 14 13 12 28 28 H 1.09000 * 109.47161 * 300.00174 * 15 14 13 29 29 H 1.09003 * 109.47289 * 180.02562 * 15 14 13 30 30 H 0.96695 * 113.99846 * 180.02562 * 18 16 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 1.4466 2.6528 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5116 -1.1940 -0.0058 10 6 4.0216 -2.6365 -0.0108 11 1 3.5835 -3.1738 -0.8519 12 6 3.6223 -3.3231 1.2968 13 6 4.1318 -4.7658 1.2915 14 6 5.6560 -4.7678 1.1592 15 6 6.0554 -4.0812 -0.1485 16 6 5.5459 -2.6380 -0.1429 17 1 5.8303 -2.1488 -1.0745 18 8 6.1203 -1.9335 0.9598 19 1 -0.4850 0.8400 -0.0004 20 1 3.8713 -0.6783 -0.8962 21 1 3.8786 -0.6819 0.8837 22 1 4.0604 -2.7857 2.1379 23 1 2.5363 -3.3220 1.3909 24 1 3.6933 -5.3029 0.4505 25 1 3.8469 -5.2552 2.2230 26 1 6.0191 -5.7957 1.1559 27 1 6.0945 -4.2307 2.0003 28 1 5.6169 -4.6183 -0.9895 29 1 7.1413 -4.0831 -0.2430 30 1 7.0862 -1.8942 0.9412 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000039246197.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:17:48 Heat of formation + Delta-G solvation = -82.344681 kcal Electronic energy + Delta-G solvation = -11723.496123 eV Core-core repulsion = 9710.394951 eV Total energy + Delta-G solvation = -2013.101172 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.120 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -38.81315 -34.66595 -33.26662 -31.29608 -29.42832 -26.97232 -22.92486 -21.95961 -20.17695 -18.98817 -16.69404 -16.36736 -15.13612 -14.27697 -14.11141 -13.65502 -13.06677 -12.53247 -12.36011 -12.13338 -11.71309 -11.47984 -11.15703 -10.74011 -10.60461 -10.31627 -9.91450 -9.85848 -9.61098 -9.36753 -8.99791 -8.88358 -8.43753 -5.95629 -3.91837 3.37480 3.44751 3.52937 4.54572 4.75074 5.12525 5.15872 5.26345 5.39435 5.69643 5.80614 5.85831 5.95524 6.01373 6.07041 6.24355 6.31912 6.54003 6.59251 6.70076 6.99666 7.07657 7.22938 7.39219 7.65785 7.90156 8.12154 8.63726 9.09775 9.68242 11.17816 Molecular weight = 184.12amu Principal moments of inertia in cm(-1) A = 0.057706 B = 0.012296 C = 0.010835 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 485.098934 B = 2276.700540 C = 2583.561532 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C 0.064 3.936 3 Si 0.877 3.123 4 H -0.279 1.279 5 H -0.289 1.289 6 H -0.263 1.263 7 C -0.513 4.513 8 H 0.072 0.928 9 C -0.006 4.006 10 C -0.064 4.064 11 H 0.070 0.930 12 C -0.101 4.101 13 C -0.121 4.121 14 C -0.112 4.112 15 C -0.150 4.150 16 C 0.105 3.895 17 H 0.046 0.954 18 O -0.554 6.554 19 H 0.261 0.739 20 H 0.006 0.994 21 H 0.025 0.975 22 H 0.061 0.939 23 H 0.072 0.928 24 H 0.054 0.946 25 H 0.053 0.947 26 H 0.049 0.951 27 H 0.064 0.936 28 H 0.067 0.933 29 H 0.054 0.946 30 H 0.361 0.639 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.206 -6.796 0.655 13.986 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.136 4.136 3 Si 0.705 3.295 4 H -0.205 1.205 5 H -0.216 1.216 6 H -0.188 1.188 7 C -0.551 4.551 8 H 0.090 0.910 9 C -0.043 4.043 10 C -0.082 4.082 11 H 0.088 0.912 12 C -0.139 4.139 13 C -0.158 4.158 14 C -0.149 4.149 15 C -0.188 4.188 16 C 0.046 3.954 17 H 0.064 0.936 18 O -0.357 6.357 19 H 0.071 0.929 20 H 0.024 0.976 21 H 0.044 0.956 22 H 0.080 0.920 23 H 0.090 0.910 24 H 0.073 0.927 25 H 0.072 0.928 26 H 0.068 0.932 27 H 0.083 0.917 28 H 0.085 0.915 29 H 0.072 0.928 30 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges 11.408 -6.614 0.821 13.212 hybrid contribution 0.949 0.819 -0.303 1.290 sum 12.357 -5.795 0.518 13.658 Atomic orbital electron populations 1.69923 1.06264 1.26691 1.51834 1.25018 0.94687 0.99106 0.94791 0.86806 0.80626 0.83730 0.78353 1.20542 1.21571 1.18757 1.21200 0.89642 0.94286 1.50003 0.90965 1.19554 0.96661 0.91608 0.96492 1.21056 0.89816 0.99471 0.97875 0.91207 1.21416 1.01469 0.93017 0.97982 1.21601 0.94941 0.98544 1.00754 1.21412 0.96905 0.98900 0.97692 1.22262 0.99777 0.97965 0.98791 1.22014 0.95724 0.89384 0.88249 0.93626 1.86657 1.23357 1.77673 1.48060 0.92928 0.97616 0.95648 0.92038 0.90974 0.92692 0.92826 0.93212 0.91723 0.91450 0.92767 0.79417 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.61 13.96 55.43 0.77 -27.83 16 2 C 0.06 1.93 5.47 -17.82 -0.10 1.83 16 3 Si 0.88 22.60 27.46 -169.99 -4.67 17.93 16 4 H -0.28 -7.05 7.11 56.52 0.40 -6.64 16 5 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 6 H -0.26 -6.65 6.55 56.52 0.37 -6.28 16 7 C -0.51 -14.93 8.96 -34.44 -0.31 -15.24 16 8 H 0.07 2.23 7.30 -52.49 -0.38 1.85 16 9 C -0.01 -0.15 3.30 -27.88 -0.09 -0.24 16 10 C -0.06 -1.31 1.97 -90.62 -0.18 -1.49 16 11 H 0.07 1.44 8.14 -51.92 -0.42 1.02 16 12 C -0.10 -1.99 4.87 -26.73 -0.13 -2.12 16 13 C -0.12 -1.90 5.92 -26.73 -0.16 -2.05 16 14 C -0.11 -1.54 5.78 -26.73 -0.15 -1.69 16 15 C -0.15 -2.04 5.64 -26.70 -0.15 -2.19 16 16 C 0.11 1.76 3.21 -26.71 -0.09 1.67 16 17 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 18 O -0.55 -9.28 11.39 -35.23 -0.40 -9.68 16 19 H 0.26 7.73 8.31 -40.82 -0.34 7.39 16 20 H 0.01 0.14 7.56 -51.93 -0.39 -0.25 16 21 H 0.03 0.67 6.90 -51.93 -0.36 0.31 16 22 H 0.06 1.27 7.68 -51.93 -0.40 0.87 16 23 H 0.07 1.58 6.95 -51.93 -0.36 1.21 16 24 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 25 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 26 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 27 H 0.06 0.92 7.68 -51.93 -0.40 0.52 16 28 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 29 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 30 H 0.36 4.21 9.08 45.56 0.41 4.62 16 LS Contribution 237.16 15.07 3.57 3.57 Total: -1.00 -31.89 237.16 -6.08 -37.98 By element: Atomic # 1 Polarization: 3.55 SS G_CDS: -4.00 Total: -0.45 kcal Atomic # 6 Polarization: -20.16 SS G_CDS: -1.36 Total: -21.52 kcal Atomic # 7 Polarization: -28.61 SS G_CDS: 0.77 Total: -27.83 kcal Atomic # 8 Polarization: -9.28 SS G_CDS: -0.40 Total: -9.68 kcal Atomic # 14 Polarization: 22.60 SS G_CDS: -4.67 Total: 17.93 kcal Total LS contribution 3.57 Total: 3.57 kcal Total: -31.89 -6.08 -37.98 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000039246197.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.367 kcal (2) G-P(sol) polarization free energy of solvation -31.895 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.262 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.083 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.978 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.345 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds