Wall clock time and date at job start Mon Mar 30 2020 02:17:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31523 * 1 3 3 Si 1.86800 * 119.99687 * 2 1 4 4 H 1.48500 * 109.47210 * 269.99666 * 3 2 1 5 5 H 1.48504 * 109.47424 * 29.99897 * 3 2 1 6 6 H 1.48502 * 109.46888 * 149.99987 * 3 2 1 7 7 C 1.37871 * 119.99908 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00483 * 0.02562 * 7 2 1 9 9 C 1.50701 * 119.99694 * 179.72112 * 7 2 1 10 10 C 1.53004 * 109.47211 * 180.27574 * 9 7 2 11 11 H 1.09007 * 109.46773 * 55.00766 * 10 9 7 12 12 C 1.52992 * 109.47243 * 295.00691 * 10 9 7 13 13 C 1.53004 * 109.46904 * 179.97438 * 12 10 9 14 14 C 1.52995 * 109.47202 * 59.99994 * 13 12 10 15 15 C 1.53000 * 109.47118 * 299.99636 * 14 13 12 16 16 C 1.52995 * 109.47161 * 175.00101 * 10 9 7 17 17 H 1.09001 * 109.47261 * 300.00166 * 16 10 9 18 18 O 1.42904 * 109.47054 * 60.00577 * 16 10 9 19 19 H 0.96995 * 120.00181 * 0.02562 * 1 2 3 20 20 H 1.09000 * 109.47827 * 300.28170 * 9 7 2 21 21 H 1.09007 * 109.47098 * 60.28447 * 9 7 2 22 22 H 1.09000 * 109.46966 * 299.99721 * 12 10 9 23 23 H 1.09003 * 109.47367 * 59.99799 * 12 10 9 24 24 H 1.09001 * 109.46771 * 299.99445 * 13 12 10 25 25 H 1.09006 * 109.47088 * 180.02562 * 13 12 10 26 26 H 1.09004 * 109.46952 * 179.97438 * 14 13 12 27 27 H 1.09000 * 109.47246 * 59.99758 * 14 13 12 28 28 H 1.09000 * 109.47161 * 300.00174 * 15 14 13 29 29 H 1.09003 * 109.47289 * 180.02562 * 15 14 13 30 30 H 0.96695 * 113.99846 * 180.02562 * 18 16 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 1.4466 2.6528 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5116 -1.1940 -0.0058 10 6 4.0216 -2.6365 -0.0108 11 1 3.5835 -3.1738 -0.8519 12 6 3.6223 -3.3231 1.2968 13 6 4.1318 -4.7658 1.2915 14 6 5.6560 -4.7678 1.1592 15 6 6.0554 -4.0812 -0.1485 16 6 5.5459 -2.6380 -0.1429 17 1 5.8303 -2.1488 -1.0745 18 8 6.1203 -1.9335 0.9598 19 1 -0.4850 0.8400 -0.0004 20 1 3.8713 -0.6783 -0.8962 21 1 3.8786 -0.6819 0.8837 22 1 4.0604 -2.7857 2.1379 23 1 2.5363 -3.3220 1.3909 24 1 3.6933 -5.3029 0.4505 25 1 3.8469 -5.2552 2.2230 26 1 6.0191 -5.7957 1.1559 27 1 6.0945 -4.2307 2.0003 28 1 5.6169 -4.6183 -0.9895 29 1 7.1413 -4.0831 -0.2430 30 1 7.0862 -1.8942 0.9412 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000039246197.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:17:48 Heat of formation + Delta-G solvation = -105.011972 kcal Electronic energy + Delta-G solvation = -11724.479050 eV Core-core repulsion = 9710.394951 eV Total energy + Delta-G solvation = -2014.084100 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.120 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.17150 -36.05244 -35.19843 -33.19842 -30.71922 -28.83921 -24.71782 -23.32263 -21.72679 -20.49184 -18.89179 -17.64786 -16.57190 -16.17378 -15.50222 -15.03045 -14.82396 -14.51002 -13.78650 -13.67757 -13.30397 -13.06162 -12.73404 -12.39110 -12.09948 -11.86539 -11.68547 -11.46203 -11.39930 -11.15603 -10.75935 -10.57668 -10.39517 -8.27957 -6.29640 1.32408 1.35430 1.49150 2.36660 3.07168 3.55466 3.91858 3.95536 4.06884 4.37391 4.42783 4.59136 4.67826 4.68775 4.81205 4.98869 5.09200 5.17739 5.22051 5.29291 5.42103 5.44188 5.53606 5.58429 5.72382 5.80893 6.32322 6.77065 7.11363 7.34149 8.88743 Molecular weight = 184.12amu Principal moments of inertia in cm(-1) A = 0.057706 B = 0.012296 C = 0.010835 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 485.098934 B = 2276.700540 C = 2583.561532 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.953 5.953 2 C 0.002 3.998 3 Si 0.947 3.053 4 H -0.265 1.265 5 H -0.283 1.283 6 H -0.254 1.254 7 C -0.520 4.520 8 H 0.035 0.965 9 C 0.000 4.000 10 C -0.069 4.069 11 H 0.063 0.937 12 C -0.097 4.097 13 C -0.117 4.117 14 C -0.108 4.108 15 C -0.143 4.143 16 C 0.109 3.891 17 H 0.053 0.947 18 O -0.575 6.575 19 H 0.265 0.735 20 H 0.009 0.991 21 H 0.013 0.987 22 H 0.048 0.952 23 H 0.032 0.968 24 H 0.058 0.942 25 H 0.064 0.936 26 H 0.078 0.922 27 H 0.062 0.938 28 H 0.072 0.928 29 H 0.087 0.913 30 H 0.385 0.615 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.945 -7.037 0.409 16.524 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.594 5.594 2 C -0.194 4.194 3 Si 0.771 3.229 4 H -0.190 1.190 5 H -0.209 1.209 6 H -0.178 1.178 7 C -0.558 4.558 8 H 0.054 0.946 9 C -0.037 4.037 10 C -0.087 4.087 11 H 0.081 0.919 12 C -0.135 4.135 13 C -0.154 4.154 14 C -0.145 4.145 15 C -0.180 4.180 16 C 0.051 3.949 17 H 0.071 0.929 18 O -0.382 6.382 19 H 0.074 0.926 20 H 0.027 0.973 21 H 0.031 0.969 22 H 0.066 0.934 23 H 0.051 0.949 24 H 0.077 0.923 25 H 0.082 0.918 26 H 0.097 0.903 27 H 0.080 0.920 28 H 0.091 0.909 29 H 0.106 0.894 30 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges 14.176 -6.869 0.572 15.763 hybrid contribution 0.029 0.847 -0.201 0.871 sum 14.205 -6.022 0.371 15.433 Atomic orbital electron populations 1.70070 1.08104 1.27928 1.53306 1.25977 0.95595 1.03327 0.94510 0.85693 0.79342 0.78687 0.79141 1.19024 1.20893 1.17829 1.21515 0.92035 0.92993 1.49304 0.94646 1.19461 0.93670 0.94840 0.95744 1.21017 0.93405 0.96355 0.97928 0.91867 1.21303 0.98987 0.95997 0.97179 1.21566 0.96985 0.95313 1.01581 1.21404 0.94644 1.00681 0.97786 1.22211 1.01793 0.95225 0.98813 1.21839 0.92575 0.91983 0.88522 0.92902 1.86591 1.25740 1.77882 1.47991 0.92648 0.97296 0.96853 0.93359 0.94883 0.92322 0.91753 0.90341 0.91952 0.90887 0.89398 0.76607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -61.76 13.96 21.45 0.30 -61.46 16 2 C 0.00 0.12 5.47 84.65 0.46 0.58 16 3 Si 0.95 46.86 27.46 68.60 1.88 48.75 16 4 H -0.27 -12.46 7.11 99.48 0.71 -11.75 16 5 H -0.28 -13.63 7.11 99.48 0.71 -12.92 16 6 H -0.25 -12.12 6.55 99.48 0.65 -11.47 16 7 C -0.52 -31.32 8.96 25.60 0.23 -31.09 16 8 H 0.04 2.32 7.30 -2.91 -0.02 2.30 16 9 C 0.00 0.01 3.30 29.85 0.10 0.11 16 10 C -0.07 -2.80 1.97 -10.80 -0.02 -2.82 16 11 H 0.06 2.62 8.14 -2.38 -0.02 2.61 16 12 C -0.10 -3.87 4.87 30.59 0.15 -3.72 16 13 C -0.12 -3.49 5.92 30.59 0.18 -3.31 16 14 C -0.11 -2.57 5.78 30.59 0.18 -2.40 16 15 C -0.14 -3.30 5.64 30.61 0.17 -3.13 16 16 C 0.11 3.39 3.21 30.61 0.10 3.49 16 17 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 18 O -0.57 -17.72 11.39 -148.98 -1.70 -19.42 16 19 H 0.26 16.00 8.31 -92.71 -0.77 15.23 16 20 H 0.01 0.43 7.56 -2.39 -0.02 0.41 16 21 H 0.01 0.69 6.90 -2.38 -0.02 0.68 16 22 H 0.05 2.01 7.68 -2.39 -0.02 1.99 16 23 H 0.03 1.52 6.95 -2.39 -0.02 1.50 16 24 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 25 H 0.06 1.77 8.14 -2.38 -0.02 1.75 16 26 H 0.08 1.49 8.14 -2.38 -0.02 1.47 16 27 H 0.06 1.54 7.68 -2.39 -0.02 1.53 16 28 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 29 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 30 H 0.39 7.56 9.08 -74.06 -0.67 6.89 16 Total: -1.00 -70.29 237.16 2.41 -67.88 By element: Atomic # 1 Polarization: 6.17 SS G_CDS: 0.38 Total: 6.55 kcal Atomic # 6 Polarization: -43.84 SS G_CDS: 1.55 Total: -42.29 kcal Atomic # 7 Polarization: -61.76 SS G_CDS: 0.30 Total: -61.46 kcal Atomic # 8 Polarization: -17.72 SS G_CDS: -1.70 Total: -19.42 kcal Atomic # 14 Polarization: 46.86 SS G_CDS: 1.88 Total: 48.75 kcal Total: -70.29 2.41 -67.88 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000039246197.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.134 kcal (2) G-P(sol) polarization free energy of solvation -70.288 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.422 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.877 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.012 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds