Wall clock time and date at job start Mon Mar 30 2020 02:17:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 119.99772 * 2 1 4 4 H 1.48494 * 109.47230 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.47301 * 300.00265 * 3 2 1 6 6 H 1.48498 * 109.47430 * 60.00111 * 3 2 1 7 7 C 1.37871 * 120.00482 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00483 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99694 * 359.71466 * 7 2 1 10 10 C 1.53004 * 109.47211 * 180.27574 * 9 7 2 11 11 H 1.08998 * 109.47007 * 305.00629 * 10 9 7 12 12 C 1.53004 * 109.46798 * 65.00508 * 10 9 7 13 13 C 1.52996 * 109.47242 * 180.02562 * 12 10 9 14 14 C 1.53006 * 109.46976 * 299.99985 * 13 12 10 15 15 C 1.52996 * 109.47206 * 59.99758 * 14 13 12 16 16 C 1.52997 * 109.47070 * 185.00010 * 10 9 7 17 17 H 1.08998 * 109.47711 * 300.00187 * 16 10 9 18 18 O 1.42898 * 109.47050 * 60.00974 * 16 10 9 19 19 H 0.96995 * 120.00207 * 359.97438 * 1 2 3 20 20 H 1.09000 * 109.47827 * 300.28170 * 9 7 2 21 21 H 1.09007 * 109.47098 * 60.28447 * 9 7 2 22 22 H 1.09000 * 109.46939 * 299.99916 * 12 10 9 23 23 H 1.08997 * 109.47262 * 59.99710 * 12 10 9 24 24 H 1.08997 * 109.47278 * 59.99660 * 13 12 10 25 25 H 1.09000 * 109.46998 * 180.02562 * 13 12 10 26 26 H 1.08997 * 109.46635 * 180.02562 * 14 13 12 27 27 H 1.08997 * 109.46851 * 299.99936 * 14 13 12 28 28 H 1.09012 * 109.46981 * 59.99824 * 15 14 13 29 29 H 1.09000 * 109.47486 * 179.97438 * 15 14 13 30 30 H 0.96699 * 114.00089 * 179.97438 * 18 16 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7090 1.3465 -0.0006 5 1 1.8903 2.3966 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2511 -2.4991 0.0054 10 6 2.2454 -3.6620 0.0104 11 1 2.9295 -3.5588 -0.8319 12 6 3.0403 -3.6476 1.3177 13 6 4.0350 -4.8101 1.3226 14 6 3.2747 -6.1324 1.2024 15 6 2.4799 -6.1468 -0.1048 16 6 1.4846 -4.9840 -0.1093 17 1 0.8006 -5.0872 0.7330 18 8 0.7423 -4.9974 -1.3303 19 1 -0.4850 0.8400 0.0004 20 1 0.6245 -2.5529 0.8956 21 1 0.6244 -2.5609 -0.8844 22 1 3.5823 -2.7058 1.4030 23 1 2.3563 -3.7508 2.1600 24 1 4.7190 -4.7065 0.4803 25 1 4.6009 -4.8001 2.2541 26 1 3.9834 -6.9605 1.2064 27 1 2.5907 -6.2360 2.0447 28 1 3.1640 -6.0431 -0.9471 29 1 1.9386 -7.0890 -0.1906 30 1 0.2346 -5.8080 -1.4730 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000039246200.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:17:53 Heat of formation + Delta-G solvation = -87.247412 kcal Electronic energy + Delta-G solvation = -11603.638326 eV Core-core repulsion = 9590.324555 eV Total energy + Delta-G solvation = -2013.313770 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.120 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -38.60119 -35.03384 -33.28170 -31.07854 -29.12721 -26.46034 -23.19805 -21.86562 -20.26839 -19.09941 -16.69712 -16.17717 -14.85959 -14.25354 -14.11429 -13.44650 -13.44037 -12.34170 -12.26753 -12.03021 -11.72830 -11.15929 -10.87034 -10.75586 -10.59388 -10.41400 -10.26086 -9.84379 -9.61115 -9.43946 -8.88018 -8.73370 -8.23962 -5.89653 -3.90658 3.36057 3.43335 3.47265 4.53226 4.76586 5.13693 5.15063 5.41069 5.45714 5.68443 5.74161 5.86250 5.97031 6.02262 6.10500 6.23035 6.42945 6.50466 6.61437 6.70412 7.02800 7.11092 7.26754 7.82066 8.01011 8.14767 8.24680 8.54771 9.16851 9.71814 11.21825 Molecular weight = 184.12amu Principal moments of inertia in cm(-1) A = 0.054499 B = 0.011331 C = 0.009874 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 513.643126 B = 2470.413697 C = 2834.936666 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.055 3.945 3 Si 0.888 3.112 4 H -0.273 1.273 5 H -0.285 1.285 6 H -0.285 1.285 7 C -0.513 4.513 8 H 0.055 0.945 9 C 0.029 3.971 10 C -0.072 4.072 11 H 0.061 0.939 12 C -0.104 4.104 13 C -0.124 4.124 14 C -0.114 4.114 15 C -0.150 4.150 16 C 0.108 3.892 17 H 0.046 0.954 18 O -0.557 6.557 19 H 0.258 0.742 20 H 0.011 0.989 21 H 0.027 0.973 22 H 0.076 0.924 23 H 0.054 0.946 24 H 0.058 0.942 25 H 0.055 0.945 26 H 0.055 0.945 27 H 0.059 0.941 28 H 0.065 0.935 29 H 0.053 0.947 30 H 0.362 0.638 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.777 -10.868 1.884 12.020 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.146 4.146 3 Si 0.716 3.284 4 H -0.198 1.198 5 H -0.211 1.211 6 H -0.212 1.212 7 C -0.551 4.551 8 H 0.073 0.927 9 C -0.008 4.008 10 C -0.091 4.091 11 H 0.079 0.921 12 C -0.141 4.141 13 C -0.161 4.161 14 C -0.151 4.151 15 C -0.188 4.188 16 C 0.049 3.951 17 H 0.064 0.936 18 O -0.361 6.361 19 H 0.068 0.932 20 H 0.029 0.971 21 H 0.045 0.955 22 H 0.094 0.906 23 H 0.073 0.927 24 H 0.076 0.924 25 H 0.073 0.927 26 H 0.073 0.927 27 H 0.078 0.922 28 H 0.084 0.916 29 H 0.072 0.928 30 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges 4.910 -10.147 1.827 11.420 hybrid contribution 0.160 0.351 0.087 0.395 sum 5.070 -9.796 1.914 11.195 Atomic orbital electron populations 1.69988 1.06001 1.26192 1.51373 1.25017 0.94797 0.99074 0.95683 0.86604 0.80136 0.84191 0.77469 1.19807 1.21125 1.21157 1.21319 0.92926 0.91114 1.49737 0.92684 1.19088 0.93606 0.90585 0.97489 1.21182 0.97722 0.93446 0.96743 0.92070 1.21502 0.97239 0.97736 0.97627 1.21649 0.98376 0.95138 1.00972 1.21455 0.98691 0.97669 0.97326 1.22305 0.99455 0.98505 0.98538 1.21998 0.91516 0.95790 0.85800 0.93563 1.86685 1.65230 1.42603 1.41534 0.93243 0.97052 0.95512 0.90583 0.92703 0.92352 0.92668 0.92667 0.92239 0.91578 0.92814 0.79360 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.79 13.29 55.43 0.74 -27.05 16 2 C 0.05 1.62 5.46 -17.82 -0.10 1.52 16 3 Si 0.89 22.19 29.54 -169.99 -5.02 17.17 16 4 H -0.27 -6.66 7.11 56.52 0.40 -6.26 16 5 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 6 H -0.29 -7.04 7.11 56.52 0.40 -6.63 16 7 C -0.51 -14.85 8.41 -34.44 -0.29 -15.14 16 8 H 0.05 1.54 7.06 -52.49 -0.37 1.17 16 9 C 0.03 0.79 4.37 -27.88 -0.12 0.67 16 10 C -0.07 -1.56 1.88 -90.62 -0.17 -1.73 16 11 H 0.06 1.39 8.14 -51.93 -0.42 0.96 16 12 C -0.10 -1.96 5.01 -26.73 -0.13 -2.10 16 13 C -0.12 -1.86 5.92 -26.73 -0.16 -2.02 16 14 C -0.11 -1.53 5.92 -26.73 -0.16 -1.69 16 15 C -0.15 -2.18 5.55 -26.70 -0.15 -2.33 16 16 C 0.11 1.96 2.91 -26.70 -0.08 1.88 16 17 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 18 O -0.56 -10.49 12.56 -35.23 -0.44 -10.93 16 19 H 0.26 7.52 8.31 -40.82 -0.34 7.19 16 20 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16 21 H 0.03 0.80 7.54 -51.93 -0.39 0.41 16 22 H 0.08 1.55 6.95 -51.93 -0.36 1.19 16 23 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 24 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 25 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 26 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 28 H 0.07 0.99 8.14 -51.92 -0.42 0.57 16 29 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.36 4.78 9.08 45.56 0.41 5.19 16 LS Contribution 242.48 15.07 3.65 3.65 Total: -1.00 -31.98 242.48 -6.50 -38.48 By element: Atomic # 1 Polarization: 3.69 SS G_CDS: -4.07 Total: -0.39 kcal Atomic # 6 Polarization: -19.58 SS G_CDS: -1.36 Total: -20.94 kcal Atomic # 7 Polarization: -27.79 SS G_CDS: 0.74 Total: -27.05 kcal Atomic # 8 Polarization: -10.49 SS G_CDS: -0.44 Total: -10.93 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -5.02 Total: 17.17 kcal Total LS contribution 3.65 Total: 3.65 kcal Total: -31.98 -6.50 -38.48 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000039246200.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.770 kcal (2) G-P(sol) polarization free energy of solvation -31.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.748 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.499 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.478 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds