Wall clock time and date at job start Mon Mar 30 2020 02:17:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 119.99772 * 2 1 4 4 H 1.48494 * 109.47230 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.47301 * 300.00265 * 3 2 1 6 6 H 1.48498 * 109.47430 * 60.00111 * 3 2 1 7 7 C 1.37871 * 120.00482 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00483 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99694 * 359.71466 * 7 2 1 10 10 C 1.53004 * 109.47211 * 180.27574 * 9 7 2 11 11 H 1.08998 * 109.47007 * 305.00629 * 10 9 7 12 12 C 1.53004 * 109.46798 * 65.00508 * 10 9 7 13 13 C 1.52996 * 109.47242 * 180.02562 * 12 10 9 14 14 C 1.53006 * 109.46976 * 299.99985 * 13 12 10 15 15 C 1.52996 * 109.47206 * 59.99758 * 14 13 12 16 16 C 1.52997 * 109.47070 * 185.00010 * 10 9 7 17 17 H 1.08998 * 109.47711 * 300.00187 * 16 10 9 18 18 O 1.42898 * 109.47050 * 60.00974 * 16 10 9 19 19 H 0.96995 * 120.00207 * 359.97438 * 1 2 3 20 20 H 1.09000 * 109.47827 * 300.28170 * 9 7 2 21 21 H 1.09007 * 109.47098 * 60.28447 * 9 7 2 22 22 H 1.09000 * 109.46939 * 299.99916 * 12 10 9 23 23 H 1.08997 * 109.47262 * 59.99710 * 12 10 9 24 24 H 1.08997 * 109.47278 * 59.99660 * 13 12 10 25 25 H 1.09000 * 109.46998 * 180.02562 * 13 12 10 26 26 H 1.08997 * 109.46635 * 180.02562 * 14 13 12 27 27 H 1.08997 * 109.46851 * 299.99936 * 14 13 12 28 28 H 1.09012 * 109.46981 * 59.99824 * 15 14 13 29 29 H 1.09000 * 109.47486 * 179.97438 * 15 14 13 30 30 H 0.96699 * 114.00089 * 179.97438 * 18 16 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7090 1.3465 -0.0006 5 1 1.8903 2.3966 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2511 -2.4991 0.0054 10 6 2.2454 -3.6620 0.0104 11 1 2.9295 -3.5588 -0.8319 12 6 3.0403 -3.6476 1.3177 13 6 4.0350 -4.8101 1.3226 14 6 3.2747 -6.1324 1.2024 15 6 2.4799 -6.1468 -0.1048 16 6 1.4846 -4.9840 -0.1093 17 1 0.8006 -5.0872 0.7330 18 8 0.7423 -4.9974 -1.3303 19 1 -0.4850 0.8400 0.0004 20 1 0.6245 -2.5529 0.8956 21 1 0.6244 -2.5609 -0.8844 22 1 3.5823 -2.7058 1.4030 23 1 2.3563 -3.7508 2.1600 24 1 4.7190 -4.7065 0.4803 25 1 4.6009 -4.8001 2.2541 26 1 3.9834 -6.9605 1.2064 27 1 2.5907 -6.2360 2.0447 28 1 3.1640 -6.0431 -0.9471 29 1 1.9386 -7.0890 -0.1906 30 1 0.2346 -5.8080 -1.4730 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000039246200.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:17:53 Heat of formation + Delta-G solvation = -109.690028 kcal Electronic energy + Delta-G solvation = -11604.611511 eV Core-core repulsion = 9590.324555 eV Total energy + Delta-G solvation = -2014.286955 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.120 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -40.05130 -36.48237 -35.31720 -32.92508 -30.48553 -28.41475 -25.08123 -23.29414 -21.78979 -20.62928 -18.48109 -18.09118 -16.64234 -15.98206 -15.45757 -14.95325 -14.77706 -14.09897 -13.93367 -13.73330 -13.46745 -12.93720 -12.51693 -12.47284 -12.19247 -12.06684 -11.69808 -11.47457 -11.37718 -11.11002 -10.75952 -10.53015 -10.37929 -8.17501 -6.27784 1.37820 1.38881 1.52038 2.41074 3.14861 3.44879 3.89188 3.92265 4.18620 4.34382 4.38811 4.54712 4.63756 4.68994 4.80269 5.05232 5.13245 5.19487 5.25553 5.29691 5.46529 5.47617 5.49755 5.63387 5.84047 5.89380 6.28757 6.87866 7.06577 7.40221 8.94945 Molecular weight = 184.12amu Principal moments of inertia in cm(-1) A = 0.054499 B = 0.011331 C = 0.009874 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 513.643126 B = 2470.413697 C = 2834.936666 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.005 4.005 3 Si 0.964 3.036 4 H -0.261 1.261 5 H -0.280 1.280 6 H -0.276 1.276 7 C -0.531 4.531 8 H 0.060 0.940 9 C 0.037 3.963 10 C -0.070 4.070 11 H 0.046 0.954 12 C -0.100 4.100 13 C -0.118 4.118 14 C -0.111 4.111 15 C -0.140 4.140 16 C 0.107 3.893 17 H 0.044 0.956 18 O -0.586 6.586 19 H 0.262 0.738 20 H -0.016 1.016 21 H -0.015 1.015 22 H 0.053 0.947 23 H 0.051 0.949 24 H 0.059 0.941 25 H 0.077 0.923 26 H 0.087 0.913 27 H 0.065 0.935 28 H 0.062 0.938 29 H 0.084 0.916 30 H 0.386 0.614 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.418 -11.914 2.399 13.743 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.202 4.202 3 Si 0.789 3.211 4 H -0.184 1.184 5 H -0.206 1.206 6 H -0.202 1.202 7 C -0.569 4.569 8 H 0.078 0.922 9 C 0.000 4.000 10 C -0.089 4.089 11 H 0.064 0.936 12 C -0.138 4.138 13 C -0.155 4.155 14 C -0.149 4.149 15 C -0.178 4.178 16 C 0.049 3.951 17 H 0.062 0.938 18 O -0.393 6.393 19 H 0.070 0.930 20 H 0.002 0.998 21 H 0.004 0.996 22 H 0.072 0.928 23 H 0.069 0.931 24 H 0.078 0.922 25 H 0.096 0.904 26 H 0.105 0.895 27 H 0.084 0.916 28 H 0.081 0.919 29 H 0.103 0.897 30 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges 6.555 -11.222 2.342 13.206 hybrid contribution -0.426 0.674 -0.102 0.803 sum 6.129 -10.549 2.240 12.404 Atomic orbital electron populations 1.70133 1.07888 1.27480 1.52212 1.26017 0.95763 1.03407 0.95032 0.85412 0.79141 0.78833 0.77751 1.18440 1.20566 1.20204 1.21706 0.93363 0.92216 1.49627 0.92163 1.18927 0.93990 0.93001 0.94077 1.21070 0.96651 0.93387 0.97756 0.93587 1.21416 0.97673 0.98908 0.95755 1.21602 0.97462 0.94145 1.02285 1.21483 0.99140 0.97499 0.96750 1.22207 0.98585 0.97757 0.99203 1.21932 0.92191 0.95474 0.85541 0.93811 1.86621 1.66024 1.44864 1.41783 0.92951 0.99779 0.99621 0.92805 0.93061 0.92220 0.90397 0.89470 0.91586 0.91916 0.89698 0.76583 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.74 13.29 21.45 0.28 -59.46 16 2 C -0.01 -0.32 5.46 84.65 0.46 0.15 16 3 Si 0.96 45.99 29.54 68.60 2.03 48.02 16 4 H -0.26 -11.78 7.11 99.48 0.71 -11.07 16 5 H -0.28 -13.06 7.11 99.48 0.71 -12.35 16 6 H -0.28 -12.73 7.11 99.48 0.71 -12.03 16 7 C -0.53 -31.67 8.41 25.60 0.22 -31.45 16 8 H 0.06 3.44 7.06 -2.91 -0.02 3.42 16 9 C 0.04 2.11 4.37 29.85 0.13 2.24 16 10 C -0.07 -3.08 1.88 -10.79 -0.02 -3.10 16 11 H 0.05 2.13 8.14 -2.39 -0.02 2.11 16 12 C -0.10 -3.76 5.01 30.59 0.15 -3.61 16 13 C -0.12 -3.22 5.92 30.60 0.18 -3.04 16 14 C -0.11 -2.56 5.92 30.59 0.18 -2.38 16 15 C -0.14 -3.64 5.55 30.61 0.17 -3.47 16 16 C 0.11 3.85 2.91 30.61 0.09 3.93 16 17 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 18 O -0.59 -22.09 12.56 -148.98 -1.87 -23.96 16 19 H 0.26 15.59 8.31 -92.71 -0.77 14.82 16 20 H -0.02 -0.99 8.14 -2.39 -0.02 -1.01 16 21 H -0.01 -0.94 7.54 -2.38 -0.02 -0.96 16 22 H 0.05 2.22 6.95 -2.39 -0.02 2.20 16 23 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 24 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 25 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 26 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 27 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 28 H 0.06 1.70 8.14 -2.38 -0.02 1.68 16 29 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 30 H 0.39 9.82 9.08 -74.06 -0.67 9.15 16 Total: -1.00 -71.04 242.48 2.43 -68.61 By element: Atomic # 1 Polarization: 7.10 SS G_CDS: 0.43 Total: 7.53 kcal Atomic # 6 Polarization: -42.30 SS G_CDS: 1.56 Total: -40.74 kcal Atomic # 7 Polarization: -59.74 SS G_CDS: 0.28 Total: -59.46 kcal Atomic # 8 Polarization: -22.09 SS G_CDS: -1.87 Total: -23.96 kcal Atomic # 14 Polarization: 45.99 SS G_CDS: 2.03 Total: 48.02 kcal Total: -71.04 2.43 -68.61 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000039246200.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.082 kcal (2) G-P(sol) polarization free energy of solvation -71.038 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.120 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.608 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.690 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds