Wall clock time and date at job start Mon Mar 30 2020 01:58:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31408 * 1 3 3 Si 1.86798 * 119.99680 * 2 1 4 4 H 1.48506 * 109.47297 * 269.99880 * 3 2 1 5 5 H 1.48503 * 109.47261 * 150.00060 * 3 2 1 6 6 H 1.48500 * 109.47454 * 30.00053 * 3 2 1 7 7 C 1.38942 * 120.00191 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00129 * 359.97438 * 7 2 1 9 9 N 1.37097 * 119.99991 * 179.97438 * 7 2 1 10 10 C 1.34779 * 120.00203 * 179.97438 * 9 7 2 11 11 O 1.21298 * 120.00061 * 0.02562 * 10 9 7 12 12 C 1.50699 * 120.00366 * 180.02562 * 10 9 7 13 13 H 1.08999 * 110.36669 * 42.35078 * 12 10 9 14 14 C 1.54381 * 110.40896 * 280.00294 * 12 10 9 15 15 C 1.54263 * 105.05762 * 217.36321 * 14 12 10 16 16 C 1.54372 * 105.06278 * 0.02562 * 15 14 12 17 17 N 1.48559 * 110.41356 * 164.82907 * 12 10 9 18 18 H 0.96996 * 120.00390 * 359.97438 * 1 2 3 19 19 H 0.96998 * 120.00598 * 0.02562 * 9 7 2 20 20 H 1.08995 * 110.32861 * 336.26366 * 14 12 10 21 21 H 1.08997 * 110.32408 * 98.47590 * 14 12 10 22 22 H 1.09005 * 110.31982 * 118.89819 * 15 14 12 23 23 H 1.08994 * 110.32658 * 240.99731 * 15 14 12 24 24 H 1.08996 * 110.41719 * 142.62828 * 16 15 14 25 25 H 1.09003 * 110.40650 * 265.06963 * 16 15 14 26 26 H 1.00900 * 111.00441 * 277.81983 * 17 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 2.4955 2.0465 -1.4001 5 1 3.5456 1.4403 0.7000 6 1 1.4454 2.6527 0.7000 7 6 2.0088 -1.2033 -0.0005 8 1 1.4689 -2.1386 -0.0005 9 7 3.3798 -1.2032 -0.0011 10 6 4.0538 -2.3704 -0.0011 11 8 3.4474 -3.4209 -0.0011 12 6 5.5608 -2.3704 -0.0011 13 1 5.9401 -1.6152 0.6873 14 6 6.0991 -2.1190 -1.4260 15 6 7.3485 -3.0158 -1.5463 16 6 7.4596 -3.7339 -0.1843 17 7 6.0789 -3.7141 0.3633 18 1 -0.4850 0.8400 0.0004 19 1 3.8649 -0.3632 -0.0007 20 1 5.3543 -2.4059 -2.1682 21 1 6.3723 -1.0709 -1.5481 22 1 7.2169 -3.7429 -2.3477 23 1 8.2346 -2.4080 -1.7294 24 1 7.7995 -4.7603 -0.3222 25 1 8.1377 -3.1935 0.4762 26 1 6.0850 -3.8402 1.3644 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000040859932.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:58:15 Heat of formation + Delta-G solvation = -31.792845 kcal Electronic energy + Delta-G solvation = -11192.410621 eV Core-core repulsion = 9077.961198 eV Total energy + Delta-G solvation = -2114.449423 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 184.095 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -39.04753 -36.89290 -33.87936 -31.63452 -30.07127 -29.06650 -24.89385 -21.85281 -20.72343 -19.18336 -18.21181 -16.58035 -16.08023 -15.04076 -14.38925 -13.54275 -13.30071 -13.13932 -12.59737 -12.48750 -11.97508 -11.87197 -11.36929 -11.17282 -11.01684 -10.57389 -10.44931 -9.94254 -9.52500 -8.62459 -8.13460 -8.09011 -6.27626 -3.78667 3.04300 3.08506 3.16467 3.75638 4.12601 4.22388 4.81035 4.88154 5.09791 5.18415 5.25501 5.42555 5.67254 5.71507 5.89360 5.96655 6.05421 6.18195 6.36189 6.91845 7.51024 7.63297 8.19058 8.65603 8.99855 9.47100 9.90336 10.85787 Molecular weight = 184.10amu Principal moments of inertia in cm(-1) A = 0.065272 B = 0.011323 C = 0.010228 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 428.869796 B = 2472.190946 C = 2736.885864 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.883 5.883 2 C 0.041 3.959 3 Si 0.879 3.121 4 H -0.271 1.271 5 H -0.270 1.270 6 H -0.277 1.277 7 C -0.304 4.304 8 H 0.119 0.881 9 N -0.593 5.593 10 C 0.461 3.539 11 O -0.555 6.555 12 C 0.054 3.946 13 H 0.056 0.944 14 C -0.115 4.115 15 C -0.122 4.122 16 C 0.035 3.965 17 N -0.637 5.637 18 H 0.273 0.727 19 H 0.369 0.631 20 H 0.078 0.922 21 H 0.070 0.930 22 H 0.071 0.929 23 H 0.066 0.934 24 H 0.080 0.920 25 H 0.035 0.965 26 H 0.338 0.662 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.706 0.588 -0.804 14.740 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.162 4.162 3 Si 0.705 3.295 4 H -0.196 1.196 5 H -0.196 1.196 6 H -0.202 1.202 7 C -0.433 4.433 8 H 0.137 0.863 9 N -0.233 5.233 10 C 0.246 3.754 11 O -0.435 6.435 12 C -0.060 4.060 13 H 0.074 0.926 14 C -0.153 4.153 15 C -0.160 4.160 16 C -0.094 4.094 17 N -0.266 5.266 18 H 0.083 0.917 19 H 0.202 0.798 20 H 0.097 0.903 21 H 0.089 0.911 22 H 0.090 0.910 23 H 0.085 0.915 24 H 0.098 0.902 25 H 0.054 0.946 26 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 13.729 -0.423 -1.332 13.800 hybrid contribution 1.061 2.077 0.692 2.433 sum 14.790 1.654 -0.640 14.896 Atomic orbital electron populations 1.69619 1.05613 1.27413 1.49699 1.25018 0.95472 0.97891 0.97779 0.86685 0.79759 0.84140 0.78893 1.19595 1.19590 1.20191 1.19444 0.79286 0.96629 1.47899 0.86302 1.42231 1.07443 1.06090 1.67520 1.19514 0.87617 0.84482 0.83830 1.90566 1.69133 1.30987 1.52833 1.22376 0.95196 0.91159 0.97271 0.92609 1.22254 0.97533 0.99464 0.96070 1.22279 0.97478 0.98631 0.97630 1.22916 0.90312 1.00590 0.95591 1.63321 1.16828 1.28365 1.18111 0.91666 0.79820 0.90278 0.91137 0.90974 0.91546 0.90197 0.94622 0.84617 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.16 13.96 55.50 0.77 -25.39 15 2 C 0.04 1.14 5.50 -17.47 -0.10 1.05 15 3 Si 0.88 19.65 27.74 -169.99 -4.71 14.93 15 4 H -0.27 -5.90 7.11 56.52 0.40 -5.50 15 5 H -0.27 -5.53 6.52 56.52 0.37 -5.16 15 6 H -0.28 -6.18 7.11 56.52 0.40 -5.78 15 7 C -0.30 -8.79 10.16 -14.94 -0.15 -8.95 15 8 H 0.12 3.93 7.39 -52.48 -0.39 3.54 15 9 N -0.59 -14.58 5.09 -10.96 -0.06 -14.64 15 10 C 0.46 10.99 6.97 -10.99 -0.08 10.92 15 11 O -0.55 -15.78 16.14 5.54 0.09 -15.70 15 12 C 0.05 0.96 3.58 -67.22 -0.24 0.72 15 13 H 0.06 0.88 8.14 -51.93 -0.42 0.45 15 14 C -0.11 -1.75 6.54 -25.35 -0.17 -1.91 15 15 C -0.12 -1.51 7.00 -25.35 -0.18 -1.69 15 16 C 0.04 0.45 7.47 -2.20 -0.02 0.43 15 17 N -0.64 -10.68 6.86 -103.97 -0.71 -11.40 15 18 H 0.27 7.45 8.31 -40.82 -0.34 7.11 15 19 H 0.37 7.99 5.76 -40.82 -0.24 7.75 15 20 H 0.08 1.36 7.85 -51.93 -0.41 0.95 15 21 H 0.07 0.91 8.14 -51.93 -0.42 0.49 15 22 H 0.07 0.88 8.14 -51.93 -0.42 0.46 15 23 H 0.07 0.66 8.14 -51.93 -0.42 0.24 15 24 H 0.08 0.92 8.14 -51.93 -0.42 0.50 15 25 H 0.04 0.39 8.14 -51.93 -0.42 -0.04 15 26 H 0.34 5.19 8.92 -39.29 -0.35 4.84 15 LS Contribution 224.80 15.07 3.39 3.39 Total: -1.00 -33.14 224.80 -5.24 -38.38 By element: Atomic # 1 Polarization: 12.94 SS G_CDS: -3.09 Total: 9.85 kcal Atomic # 6 Polarization: 1.49 SS G_CDS: -0.92 Total: 0.57 kcal Atomic # 7 Polarization: -51.43 SS G_CDS: 0.01 Total: -51.42 kcal Atomic # 8 Polarization: -15.78 SS G_CDS: 0.09 Total: -15.70 kcal Atomic # 14 Polarization: 19.65 SS G_CDS: -4.71 Total: 14.93 kcal Total LS contribution 3.39 Total: 3.39 kcal Total: -33.14 -5.24 -38.38 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000040859932.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.587 kcal (2) G-P(sol) polarization free energy of solvation -33.138 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.551 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.242 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.379 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.793 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds