Wall clock time and date at job start Mon Mar 30 2020 01:58:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31408 * 1 3 3 Si 1.86798 * 119.99680 * 2 1 4 4 H 1.48506 * 109.47297 * 269.99880 * 3 2 1 5 5 H 1.48503 * 109.47261 * 150.00060 * 3 2 1 6 6 H 1.48500 * 109.47454 * 30.00053 * 3 2 1 7 7 C 1.38942 * 120.00191 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00129 * 359.97438 * 7 2 1 9 9 N 1.37097 * 119.99991 * 179.97438 * 7 2 1 10 10 C 1.34779 * 120.00203 * 179.97438 * 9 7 2 11 11 O 1.21298 * 120.00061 * 0.02562 * 10 9 7 12 12 C 1.50699 * 120.00366 * 180.02562 * 10 9 7 13 13 H 1.08999 * 110.36669 * 42.35078 * 12 10 9 14 14 C 1.54381 * 110.40896 * 280.00294 * 12 10 9 15 15 C 1.54263 * 105.05762 * 217.36321 * 14 12 10 16 16 C 1.54372 * 105.06278 * 0.02562 * 15 14 12 17 17 N 1.48559 * 110.41356 * 164.82907 * 12 10 9 18 18 H 0.96996 * 120.00390 * 359.97438 * 1 2 3 19 19 H 0.96998 * 120.00598 * 0.02562 * 9 7 2 20 20 H 1.08995 * 110.32861 * 336.26366 * 14 12 10 21 21 H 1.08997 * 110.32408 * 98.47590 * 14 12 10 22 22 H 1.09005 * 110.31982 * 118.89819 * 15 14 12 23 23 H 1.08994 * 110.32658 * 240.99731 * 15 14 12 24 24 H 1.08996 * 110.41719 * 142.62828 * 16 15 14 25 25 H 1.09003 * 110.40650 * 265.06963 * 16 15 14 26 26 H 1.00900 * 111.00441 * 277.81983 * 17 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 2.4955 2.0465 -1.4001 5 1 3.5456 1.4403 0.7000 6 1 1.4454 2.6527 0.7000 7 6 2.0088 -1.2033 -0.0005 8 1 1.4689 -2.1386 -0.0005 9 7 3.3798 -1.2032 -0.0011 10 6 4.0538 -2.3704 -0.0011 11 8 3.4474 -3.4209 -0.0011 12 6 5.5608 -2.3704 -0.0011 13 1 5.9401 -1.6152 0.6873 14 6 6.0991 -2.1190 -1.4260 15 6 7.3485 -3.0158 -1.5463 16 6 7.4596 -3.7339 -0.1843 17 7 6.0789 -3.7141 0.3633 18 1 -0.4850 0.8400 0.0004 19 1 3.8649 -0.3632 -0.0007 20 1 5.3543 -2.4059 -2.1682 21 1 6.3723 -1.0709 -1.5481 22 1 7.2169 -3.7429 -2.3477 23 1 8.2346 -2.4080 -1.7294 24 1 7.7995 -4.7603 -0.3222 25 1 8.1377 -3.1935 0.4762 26 1 6.0850 -3.8402 1.3644 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000040859932.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:58:15 Heat of formation + Delta-G solvation = -59.629685 kcal Electronic energy + Delta-G solvation = -11193.617717 eV Core-core repulsion = 9077.961198 eV Total energy + Delta-G solvation = -2115.656519 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 184.095 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -40.68981 -38.40922 -35.98015 -33.76842 -31.22127 -30.41674 -26.85858 -23.35597 -21.78978 -21.12716 -20.08536 -17.97453 -17.65195 -16.88259 -15.89843 -15.31349 -15.02657 -14.66817 -14.38336 -13.92043 -13.46703 -13.12044 -12.98426 -12.50566 -12.38257 -12.15483 -11.97922 -11.54225 -11.49914 -10.40864 -10.26005 -9.43509 -8.42573 -6.03962 1.28757 1.34652 1.43738 1.92783 2.22139 2.71777 3.11971 3.51602 3.75629 3.85435 4.06290 4.28733 4.36037 4.61695 4.75382 4.93599 5.02221 5.14945 5.24804 5.50880 5.79244 5.95292 6.37165 6.59563 6.86887 7.38671 7.96729 8.75389 Molecular weight = 184.10amu Principal moments of inertia in cm(-1) A = 0.065272 B = 0.011323 C = 0.010228 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 428.869796 B = 2472.190946 C = 2736.885864 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.014 4.014 3 Si 0.965 3.035 4 H -0.254 1.254 5 H -0.232 1.232 6 H -0.273 1.273 7 C -0.332 4.332 8 H 0.053 0.947 9 N -0.589 5.589 10 C 0.456 3.544 11 O -0.613 6.613 12 C 0.061 3.939 13 H 0.090 0.910 14 C -0.116 4.116 15 C -0.117 4.117 16 C 0.037 3.963 17 N -0.670 5.670 18 H 0.280 0.720 19 H 0.389 0.611 20 H 0.047 0.953 21 H 0.102 0.898 22 H 0.067 0.933 23 H 0.102 0.898 24 H 0.089 0.911 25 H 0.064 0.936 26 H 0.342 0.658 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.234 2.843 -0.825 18.473 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.213 4.213 3 Si 0.785 3.215 4 H -0.179 1.179 5 H -0.156 1.156 6 H -0.198 1.198 7 C -0.461 4.461 8 H 0.071 0.929 9 N -0.231 5.231 10 C 0.243 3.757 11 O -0.497 6.497 12 C -0.052 4.052 13 H 0.108 0.892 14 C -0.155 4.155 15 C -0.155 4.155 16 C -0.091 4.091 17 N -0.300 5.300 18 H 0.089 0.911 19 H 0.224 0.776 20 H 0.066 0.934 21 H 0.120 0.880 22 H 0.086 0.914 23 H 0.121 0.879 24 H 0.107 0.893 25 H 0.083 0.917 26 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 17.293 1.824 -1.354 17.442 hybrid contribution -0.115 1.233 0.697 1.421 sum 17.178 3.057 -0.657 17.460 Atomic orbital electron populations 1.69803 1.08162 1.29335 1.50175 1.26129 0.96488 1.02727 0.95921 0.85365 0.79450 0.76593 0.80128 1.17864 1.15560 1.19759 1.19022 0.81523 0.94964 1.50637 0.92920 1.42037 1.05755 1.07451 1.67833 1.20855 0.90564 0.83217 0.81042 1.90532 1.71271 1.33069 1.54784 1.22321 0.89891 0.92961 1.00040 0.89200 1.22327 0.97948 1.02093 0.93144 1.22319 0.97320 0.98443 0.97370 1.23038 0.88338 1.01829 0.95912 1.63246 1.19928 1.28047 1.18825 0.91052 0.77560 0.93413 0.87951 0.91432 0.87922 0.89302 0.91733 0.84160 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.14 13.96 21.66 0.30 -56.84 15 2 C -0.01 -0.79 5.50 84.93 0.47 -0.33 15 3 Si 0.97 39.15 27.74 68.60 1.90 41.06 15 4 H -0.25 -9.71 7.11 99.48 0.71 -9.00 15 5 H -0.23 -7.95 6.52 99.48 0.65 -7.30 15 6 H -0.27 -10.90 7.11 99.48 0.71 -10.19 15 7 C -0.33 -20.08 10.16 84.04 0.85 -19.23 15 8 H 0.05 3.80 7.39 -2.91 -0.02 3.77 15 9 N -0.59 -28.97 5.09 -306.98 -1.56 -30.53 15 10 C 0.46 22.00 6.97 87.66 0.61 22.61 15 11 O -0.61 -36.63 16.14 -3.09 -0.05 -36.67 15 12 C 0.06 2.05 3.58 44.32 0.16 2.21 15 13 H 0.09 2.42 8.14 -2.39 -0.02 2.40 15 14 C -0.12 -3.20 6.54 31.49 0.21 -2.99 15 15 C -0.12 -2.42 7.00 31.49 0.22 -2.20 15 16 C 0.04 0.80 7.47 86.45 0.65 1.45 15 17 N -0.67 -21.28 6.86 -482.85 -3.31 -24.59 15 18 H 0.28 15.57 8.31 -92.71 -0.77 14.80 15 19 H 0.39 15.79 5.76 -92.71 -0.53 15.26 15 20 H 0.05 1.60 7.85 -2.39 -0.02 1.58 15 21 H 0.10 2.15 8.14 -2.39 -0.02 2.13 15 22 H 0.07 1.46 8.14 -2.38 -0.02 1.44 15 23 H 0.10 1.44 8.14 -2.39 -0.02 1.42 15 24 H 0.09 1.76 8.14 -2.39 -0.02 1.74 15 25 H 0.06 1.06 8.14 -2.39 -0.02 1.04 15 26 H 0.34 9.99 8.92 -89.69 -0.80 9.19 15 Total: -1.00 -78.04 224.80 0.24 -77.79 By element: Atomic # 1 Polarization: 28.48 SS G_CDS: -0.20 Total: 28.28 kcal Atomic # 6 Polarization: -1.65 SS G_CDS: 3.16 Total: 1.51 kcal Atomic # 7 Polarization: -107.39 SS G_CDS: -4.57 Total: -111.96 kcal Atomic # 8 Polarization: -36.63 SS G_CDS: -0.05 Total: -36.67 kcal Atomic # 14 Polarization: 39.15 SS G_CDS: 1.90 Total: 41.06 kcal Total: -78.04 0.24 -77.79 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000040859932.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.162 kcal (2) G-P(sol) polarization free energy of solvation -78.036 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.874 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.245 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.791 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.630 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds