Wall clock time and date at job start Mon Mar 30 2020 02:01:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86800 * 120.00602 * 2 1 4 4 H 1.48500 * 109.47035 * 239.72524 * 3 2 1 5 5 H 1.48503 * 109.46845 * 359.72020 * 3 2 1 6 6 H 1.48503 * 109.47237 * 119.72280 * 3 2 1 7 7 C 1.38956 * 119.99490 * 179.72143 * 2 1 3 8 8 H 1.07999 * 119.99983 * 180.27478 * 7 2 1 9 9 N 1.37095 * 120.00025 * 0.27571 * 7 2 1 10 10 C 1.34777 * 119.99970 * 179.97438 * 9 7 2 11 11 O 1.21292 * 119.99980 * 0.02562 * 10 9 7 12 12 C 1.50706 * 120.00146 * 180.02562 * 10 9 7 13 13 H 1.09000 * 110.27198 * 299.37048 * 12 10 9 14 14 C 1.54595 * 110.30874 * 177.17285 * 12 10 9 15 15 C 1.54940 * 102.92012 * 219.12401 * 14 12 10 16 16 N 1.48539 * 103.22668 * 37.41555 * 15 14 12 17 17 C 1.47904 * 105.81755 * 320.79262 * 16 15 14 18 18 H 0.96991 * 120.00673 * 179.97438 * 1 2 3 19 19 H 0.96999 * 119.99986 * 0.02562 * 9 7 2 20 20 H 1.08995 * 110.72656 * 337.48434 * 14 12 10 21 21 H 1.09001 * 110.72369 * 100.77056 * 14 12 10 22 22 H 1.09000 * 110.66649 * 278.98357 * 15 14 12 23 23 H 1.08996 * 110.66643 * 155.84595 * 15 14 12 24 24 H 1.00900 * 111.00111 * 81.29917 * 16 15 14 25 25 H 1.09001 * 109.91759 * 265.97334 * 17 16 15 26 26 H 1.09002 * 109.91314 * 144.68359 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2483 1.6176 0.0000 4 1 3.1071 1.6933 -1.2091 5 1 1.2833 2.7464 -0.0068 6 1 3.0970 1.6992 1.2159 7 6 2.0088 -1.2034 0.0059 8 1 3.0888 -1.2035 0.0103 9 7 1.3232 -2.3907 0.0059 10 6 1.9970 -3.5579 0.0111 11 8 3.2099 -3.5580 0.0161 12 6 1.2434 -4.8630 0.0105 13 1 0.6166 -4.9375 0.8992 14 6 2.2295 -6.0519 -0.0545 15 6 1.5125 -7.0452 -1.0032 16 7 0.8819 -6.1562 -2.0124 17 6 0.3838 -4.9833 -1.2614 18 1 -0.4851 -0.8399 -0.0004 19 1 0.3532 -2.3906 0.0015 20 1 3.1848 -5.7382 -0.4750 21 1 2.3675 -6.4930 0.9327 22 1 0.7545 -7.6133 -0.4639 23 1 2.2322 -7.7136 -1.4756 24 1 1.5491 -5.8780 -2.7164 25 1 -0.6614 -5.1324 -0.9906 26 1 0.4885 -4.0830 -1.8669 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000062116360.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:01:34 Heat of formation + Delta-G solvation = -43.944845 kcal Electronic energy + Delta-G solvation = -11242.459599 eV Core-core repulsion = 9127.483225 eV Total energy + Delta-G solvation = -2114.976374 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 184.095 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -39.26082 -36.94107 -34.34513 -31.22805 -29.76094 -28.65299 -24.62624 -21.96898 -21.29798 -19.05462 -17.96171 -16.79431 -15.60962 -15.32439 -14.58502 -13.76001 -13.70374 -13.20590 -13.03437 -11.98952 -11.44220 -11.21518 -11.19105 -11.04882 -10.85733 -10.46863 -10.22033 -9.89319 -9.58728 -8.76766 -8.28003 -8.07271 -6.78718 -3.92265 3.28535 3.33147 3.53631 3.78696 4.21917 4.41253 4.73944 4.94747 5.14463 5.31444 5.46719 5.52562 5.73454 5.80815 6.00305 6.08510 6.21416 6.29769 6.54387 6.86011 7.44276 7.76511 8.04645 8.56217 8.75168 9.44115 9.83346 10.64522 Molecular weight = 184.10amu Principal moments of inertia in cm(-1) A = 0.081003 B = 0.010187 C = 0.009539 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 345.583088 B = 2747.884092 C = 2934.464382 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C -0.008 4.008 3 Si 1.092 2.908 4 H -0.284 1.284 5 H -0.278 1.278 6 H -0.284 1.284 7 C -0.387 4.387 8 H 0.098 0.902 9 N -0.570 5.570 10 C 0.447 3.553 11 O -0.590 6.590 12 C -0.133 4.133 13 H 0.087 0.913 14 C -0.138 4.138 15 C 0.041 3.959 16 N -0.674 5.674 17 C 0.050 3.950 18 H 0.262 0.738 19 H 0.377 0.623 20 H 0.086 0.914 21 H 0.069 0.931 22 H 0.077 0.923 23 H 0.072 0.928 24 H 0.338 0.662 25 H 0.078 0.922 26 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.320 -8.283 -1.212 8.378 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.211 4.211 3 Si 0.917 3.083 4 H -0.210 1.210 5 H -0.203 1.203 6 H -0.210 1.210 7 C -0.516 4.516 8 H 0.116 0.884 9 N -0.207 5.207 10 C 0.233 3.767 11 O -0.476 6.476 12 C -0.157 4.157 13 H 0.106 0.894 14 C -0.178 4.178 15 C -0.089 4.089 16 N -0.301 5.301 17 C -0.081 4.081 18 H 0.073 0.927 19 H 0.210 0.790 20 H 0.105 0.895 21 H 0.088 0.912 22 H 0.095 0.905 23 H 0.091 0.909 24 H 0.153 0.847 25 H 0.097 0.903 26 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -0.350 -6.947 -1.288 7.074 hybrid contribution 0.400 -1.192 0.378 1.313 sum 0.051 -8.139 -0.910 8.190 Atomic orbital electron populations 1.70896 1.06515 1.29468 1.46820 1.26538 0.96530 1.02671 0.95327 0.83129 0.74447 0.73595 0.77081 1.20983 1.20334 1.20993 1.20566 0.94689 0.83984 1.52345 0.88375 1.41960 1.08230 1.05545 1.64946 1.19695 0.88126 0.84577 0.84282 1.90496 1.13970 1.87013 1.56077 1.22442 0.97932 0.95160 1.00144 0.89445 1.22995 0.99764 0.94240 1.00767 1.23135 0.97062 0.95653 0.93019 1.62771 1.38981 1.15100 1.13218 1.22776 0.98739 0.93478 0.93071 0.92700 0.79005 0.89522 0.91205 0.90502 0.90902 0.84722 0.90343 0.91005 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.27 13.68 55.50 0.76 -24.51 15 2 C -0.01 -0.22 5.50 -17.47 -0.10 -0.31 15 3 Si 1.09 24.33 29.92 -169.99 -5.09 19.24 15 4 H -0.28 -6.09 7.11 56.52 0.40 -5.69 15 5 H -0.28 -6.13 7.11 56.52 0.40 -5.73 15 6 H -0.28 -6.10 7.11 56.52 0.40 -5.70 15 7 C -0.39 -10.99 9.68 -14.93 -0.14 -11.13 15 8 H 0.10 2.95 7.16 -52.49 -0.38 2.58 15 9 N -0.57 -14.54 5.12 -10.96 -0.06 -14.60 15 10 C 0.45 10.77 6.91 -10.98 -0.08 10.69 15 11 O -0.59 -16.42 15.02 5.55 0.08 -16.33 15 12 C -0.13 -2.42 3.38 -90.41 -0.31 -2.73 15 13 H 0.09 1.46 8.14 -51.93 -0.42 1.04 15 14 C -0.14 -2.24 6.39 -24.87 -0.16 -2.40 15 15 C 0.04 0.55 7.55 -1.89 -0.01 0.53 15 16 N -0.67 -9.97 7.51 -110.08 -0.83 -10.80 15 17 C 0.05 0.81 7.10 -2.75 -0.02 0.79 15 18 H 0.26 7.09 6.77 -40.82 -0.28 6.82 15 19 H 0.38 8.91 6.70 -40.82 -0.27 8.63 15 20 H 0.09 1.62 6.91 -51.93 -0.36 1.26 15 21 H 0.07 1.03 8.14 -51.93 -0.42 0.61 15 22 H 0.08 0.94 8.14 -51.93 -0.42 0.52 15 23 H 0.07 0.84 8.14 -51.93 -0.42 0.42 15 24 H 0.34 4.86 8.92 -39.29 -0.35 4.51 15 25 H 0.08 1.16 8.14 -51.93 -0.42 0.74 15 26 H 0.07 1.29 7.59 -51.93 -0.39 0.89 15 LS Contribution 223.86 15.07 3.37 3.37 Total: -1.00 -31.77 223.86 -5.51 -37.28 By element: Atomic # 1 Polarization: 13.85 SS G_CDS: -2.94 Total: 10.91 kcal Atomic # 6 Polarization: -3.75 SS G_CDS: -0.82 Total: -4.56 kcal Atomic # 7 Polarization: -49.79 SS G_CDS: -0.12 Total: -49.91 kcal Atomic # 8 Polarization: -16.42 SS G_CDS: 0.08 Total: -16.33 kcal Atomic # 14 Polarization: 24.33 SS G_CDS: -5.09 Total: 19.24 kcal Total LS contribution 3.37 Total: 3.37 kcal Total: -31.77 -5.51 -37.28 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000062116360.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.667 kcal (2) G-P(sol) polarization free energy of solvation -31.771 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.438 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.278 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.945 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds