Wall clock time and date at job start Mon Mar 30 2020 02:01:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86800 * 120.00602 * 2 1 4 4 H 1.48500 * 109.47035 * 239.72524 * 3 2 1 5 5 H 1.48503 * 109.46845 * 359.72020 * 3 2 1 6 6 H 1.48503 * 109.47237 * 119.72280 * 3 2 1 7 7 C 1.38956 * 119.99490 * 179.72143 * 2 1 3 8 8 H 1.07999 * 119.99983 * 180.27478 * 7 2 1 9 9 N 1.37095 * 120.00025 * 0.27571 * 7 2 1 10 10 C 1.34777 * 119.99970 * 179.97438 * 9 7 2 11 11 O 1.21292 * 119.99980 * 0.02562 * 10 9 7 12 12 C 1.50706 * 120.00146 * 180.02562 * 10 9 7 13 13 H 1.09000 * 110.27198 * 299.37048 * 12 10 9 14 14 C 1.54595 * 110.30874 * 177.17285 * 12 10 9 15 15 C 1.54940 * 102.92012 * 219.12401 * 14 12 10 16 16 N 1.48539 * 103.22668 * 37.41555 * 15 14 12 17 17 C 1.47904 * 105.81755 * 320.79262 * 16 15 14 18 18 H 0.96991 * 120.00673 * 179.97438 * 1 2 3 19 19 H 0.96999 * 119.99986 * 0.02562 * 9 7 2 20 20 H 1.08995 * 110.72656 * 337.48434 * 14 12 10 21 21 H 1.09001 * 110.72369 * 100.77056 * 14 12 10 22 22 H 1.09000 * 110.66649 * 278.98357 * 15 14 12 23 23 H 1.08996 * 110.66643 * 155.84595 * 15 14 12 24 24 H 1.00900 * 111.00111 * 81.29917 * 16 15 14 25 25 H 1.09001 * 109.91759 * 265.97334 * 17 16 15 26 26 H 1.09002 * 109.91314 * 144.68359 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2483 1.6176 0.0000 4 1 3.1071 1.6933 -1.2091 5 1 1.2833 2.7464 -0.0068 6 1 3.0970 1.6992 1.2159 7 6 2.0088 -1.2034 0.0059 8 1 3.0888 -1.2035 0.0103 9 7 1.3232 -2.3907 0.0059 10 6 1.9970 -3.5579 0.0111 11 8 3.2099 -3.5580 0.0161 12 6 1.2434 -4.8630 0.0105 13 1 0.6166 -4.9375 0.8992 14 6 2.2295 -6.0519 -0.0545 15 6 1.5125 -7.0452 -1.0032 16 7 0.8819 -6.1562 -2.0124 17 6 0.3838 -4.9833 -1.2614 18 1 -0.4851 -0.8399 -0.0004 19 1 0.3532 -2.3906 0.0015 20 1 3.1848 -5.7382 -0.4750 21 1 2.3675 -6.4930 0.9327 22 1 0.7545 -7.6133 -0.4639 23 1 2.2322 -7.7136 -1.4756 24 1 1.5491 -5.8780 -2.7164 25 1 -0.6614 -5.1324 -0.9906 26 1 0.4885 -4.0830 -1.8669 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000062116360.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:01:34 Heat of formation + Delta-G solvation = -69.028401 kcal Electronic energy + Delta-G solvation = -11243.547304 eV Core-core repulsion = 9127.483225 eV Total energy + Delta-G solvation = -2116.064078 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 184.095 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -40.96169 -38.52787 -36.43205 -33.26766 -31.18777 -29.95867 -26.67328 -23.53951 -22.59871 -20.77895 -20.03335 -18.43273 -17.13922 -16.81562 -16.55303 -15.53722 -15.07543 -14.93833 -14.73780 -13.47016 -13.25369 -12.87631 -12.68505 -12.44041 -12.27754 -11.94378 -11.91658 -11.78140 -11.57630 -10.55033 -10.17708 -9.69011 -8.98230 -6.12995 1.48343 1.52445 1.80987 1.92970 2.38783 2.91611 3.09760 3.26963 3.58449 3.90725 4.04440 4.26778 4.42257 4.54511 4.56730 4.85810 4.92440 4.99786 5.23187 5.56751 5.65693 5.90112 6.26137 6.50190 6.66542 7.37205 7.83846 8.49044 Molecular weight = 184.10amu Principal moments of inertia in cm(-1) A = 0.081003 B = 0.010187 C = 0.009539 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 345.583088 B = 2747.884092 C = 2934.464382 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C -0.039 4.039 3 Si 1.134 2.866 4 H -0.272 1.272 5 H -0.271 1.271 6 H -0.273 1.273 7 C -0.418 4.418 8 H 0.072 0.928 9 N -0.579 5.579 10 C 0.444 3.556 11 O -0.632 6.632 12 C -0.128 4.128 13 H 0.109 0.891 14 C -0.138 4.138 15 C 0.051 3.949 16 N -0.672 5.672 17 C 0.056 3.944 18 H 0.259 0.741 19 H 0.385 0.615 20 H 0.056 0.944 21 H 0.085 0.915 22 H 0.098 0.902 23 H 0.094 0.906 24 H 0.338 0.662 25 H 0.101 0.899 26 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.962 -9.173 -1.211 9.302 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.238 4.238 3 Si 0.954 3.046 4 H -0.198 1.198 5 H -0.195 1.195 6 H -0.198 1.198 7 C -0.547 4.547 8 H 0.090 0.910 9 N -0.216 5.216 10 C 0.233 3.767 11 O -0.520 6.520 12 C -0.151 4.151 13 H 0.127 0.873 14 C -0.177 4.177 15 C -0.078 4.078 16 N -0.298 5.298 17 C -0.074 4.074 18 H 0.070 0.930 19 H 0.219 0.781 20 H 0.075 0.925 21 H 0.104 0.896 22 H 0.117 0.883 23 H 0.113 0.887 24 H 0.153 0.847 25 H 0.119 0.881 26 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -1.017 -7.871 -1.290 8.041 hybrid contribution 0.616 -0.995 0.380 1.230 sum -0.401 -8.866 -0.910 8.922 Atomic orbital electron populations 1.70968 1.06986 1.29549 1.47576 1.27884 0.96657 1.05365 0.93859 0.82630 0.73841 0.70209 0.77954 1.19763 1.19517 1.19795 1.20571 0.93937 0.85809 1.54349 0.90965 1.42004 1.08603 1.05456 1.65574 1.20812 0.87998 0.86093 0.81818 1.90467 1.16189 1.87987 1.57323 1.22510 0.98375 0.92069 1.02189 0.87301 1.23007 0.98113 0.94243 1.02359 1.23220 0.97691 0.94883 0.92048 1.62837 1.39280 1.14395 1.13312 1.22732 0.99579 0.93343 0.91776 0.92963 0.78056 0.92520 0.89635 0.88339 0.88733 0.84694 0.88072 0.93215 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -51.13 13.68 21.66 0.30 -50.83 15 2 C -0.04 -2.13 5.50 84.93 0.47 -1.66 15 3 Si 1.13 48.59 29.92 68.60 2.05 50.64 15 4 H -0.27 -11.09 7.11 99.48 0.71 -10.38 15 5 H -0.27 -11.19 7.11 99.48 0.71 -10.49 15 6 H -0.27 -11.12 7.11 99.48 0.71 -10.41 15 7 C -0.42 -24.21 9.68 84.04 0.81 -23.40 15 8 H 0.07 4.50 7.16 -2.91 -0.02 4.48 15 9 N -0.58 -29.96 5.12 -306.98 -1.57 -31.53 15 10 C 0.44 21.61 6.91 87.66 0.61 22.22 15 11 O -0.63 -36.01 15.02 -3.07 -0.05 -36.06 15 12 C -0.13 -4.47 3.38 -10.66 -0.04 -4.51 15 13 H 0.11 3.37 8.14 -2.39 -0.02 3.35 15 14 C -0.14 -4.21 6.39 31.80 0.20 -4.01 15 15 C 0.05 1.18 7.55 86.65 0.65 1.84 15 16 N -0.67 -18.17 7.51 -502.18 -3.77 -21.95 15 17 C 0.06 1.73 7.10 86.44 0.61 2.35 15 18 H 0.26 14.10 6.77 -92.72 -0.63 13.47 15 19 H 0.39 18.36 6.70 -92.71 -0.62 17.73 15 20 H 0.06 2.09 6.91 -2.39 -0.02 2.08 15 21 H 0.09 2.33 8.14 -2.39 -0.02 2.31 15 22 H 0.10 1.95 8.14 -2.39 -0.02 1.93 15 23 H 0.09 1.84 8.14 -2.39 -0.02 1.82 15 24 H 0.34 9.16 8.92 -89.69 -0.80 8.36 15 25 H 0.10 2.69 8.14 -2.39 -0.02 2.67 15 26 H 0.05 1.75 7.59 -2.39 -0.02 1.73 15 Total: -1.00 -68.46 223.86 0.20 -68.26 By element: Atomic # 1 Polarization: 28.74 SS G_CDS: -0.08 Total: 28.66 kcal Atomic # 6 Polarization: -10.50 SS G_CDS: 3.32 Total: -7.18 kcal Atomic # 7 Polarization: -99.26 SS G_CDS: -5.05 Total: -104.31 kcal Atomic # 8 Polarization: -36.01 SS G_CDS: -0.05 Total: -36.06 kcal Atomic # 14 Polarization: 48.59 SS G_CDS: 2.05 Total: 50.64 kcal Total: -68.46 0.20 -68.26 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000062116360.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.772 kcal (2) G-P(sol) polarization free energy of solvation -68.456 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.228 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.199 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.257 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.028 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds