Wall clock time and date at job start Mon Mar 30 2020 02:21:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53000 * 109.89779 * 2 1 4 4 C 1.54388 * 109.82990 * 120.93142 * 2 1 3 5 5 C 1.55308 * 102.43740 * 140.97207 * 4 2 1 6 6 C 1.54952 * 100.93825 * 325.76522 * 5 4 2 7 7 H 1.08998 * 110.31173 * 277.52833 * 6 5 4 8 8 C 1.52996 * 110.30709 * 155.46169 * 6 5 4 9 9 C 1.50701 * 109.47187 * 175.00013 * 8 6 5 10 10 H 1.07998 * 120.00043 * 359.97438 * 9 8 6 11 11 C 1.37882 * 120.00156 * 180.02562 * 9 8 6 12 12 N 1.31515 * 119.99919 * 0.02562 * 11 9 8 13 13 Si 1.86798 * 120.00101 * 179.97438 * 11 9 8 14 14 H 1.48501 * 109.46794 * 59.99816 * 13 11 9 15 15 H 1.48495 * 109.47178 * 179.97438 * 13 11 9 16 16 H 1.48503 * 109.47179 * 299.99933 * 13 11 9 17 17 O 1.43640 * 105.13916 * 36.44606 * 6 5 4 18 18 H 1.09011 * 109.47343 * 299.06806 * 1 2 3 19 19 H 1.08996 * 109.47368 * 59.06787 * 1 2 3 20 20 H 1.09001 * 109.47534 * 179.07170 * 1 2 3 21 21 H 1.09006 * 109.46954 * 180.93277 * 3 2 1 22 22 H 1.09003 * 109.46999 * 300.92978 * 3 2 1 23 23 H 1.08999 * 109.47602 * 60.93273 * 3 2 1 24 24 H 1.09002 * 110.84891 * 22.67796 * 4 2 1 25 25 H 1.09001 * 110.84460 * 259.25989 * 4 2 1 26 26 H 1.09000 * 111.12817 * 83.68227 * 5 4 2 27 27 H 1.08998 * 111.12300 * 207.80930 * 5 4 2 28 28 H 1.08997 * 109.47291 * 294.99838 * 8 6 5 29 29 H 1.08999 * 109.47679 * 54.99835 * 8 6 5 30 30 H 0.96996 * 119.99861 * 180.02562 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0507 1.4387 0.0000 4 6 2.0537 -0.7465 1.2458 5 6 3.2755 -1.5220 0.6820 6 6 2.7811 -1.8489 -0.7497 7 1 2.1476 -2.7358 -0.7380 8 6 3.9715 -2.0600 -1.6873 9 6 3.4735 -2.4962 -3.0411 10 1 2.4140 -2.6116 -3.2153 11 6 4.3707 -2.7488 -4.0572 12 7 5.6611 -2.6097 -3.8447 13 14 3.7535 -3.2901 -5.7351 14 1 2.8618 -2.2433 -6.2958 15 1 4.9089 -3.4949 -6.6451 16 1 2.9989 -4.5618 -5.5984 17 8 2.0217 -0.6993 -1.1560 18 1 -0.3634 0.4993 0.8983 19 1 -0.3634 0.5282 -0.8815 20 1 -0.3634 -1.0275 -0.0166 21 1 3.1406 1.4306 -0.0167 22 1 1.6776 1.9601 -0.8816 23 1 1.7049 1.9503 0.8982 24 1 1.3011 -1.4349 1.6304 25 1 2.3638 -0.0425 2.0180 26 1 4.1637 -0.8908 0.6563 27 1 3.4599 -2.4326 1.2520 28 1 4.5253 -1.1266 -1.7873 29 1 4.6261 -2.8285 -1.2761 30 1 6.2922 -2.7871 -4.5596 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000075540248.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:21:15 Heat of formation + Delta-G solvation = -69.576282 kcal Electronic energy + Delta-G solvation = -11584.342439 eV Core-core repulsion = 9571.794946 eV Total energy + Delta-G solvation = -2012.547493 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.120 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -39.13693 -33.66917 -32.24775 -31.37056 -28.52744 -27.03443 -24.64780 -22.01826 -20.28369 -19.32726 -16.29897 -15.74332 -14.96001 -14.43702 -13.83994 -13.19618 -12.95434 -12.70090 -12.26475 -11.81231 -11.62072 -11.37034 -11.21233 -11.10801 -10.92595 -10.54624 -10.39935 -10.22624 -10.04437 -9.45168 -8.95103 -8.55812 -8.28588 -5.91461 -3.91329 3.40521 3.43650 3.47816 4.43348 4.55075 5.01262 5.15137 5.32158 5.45375 5.51727 5.65585 5.78062 5.85002 6.03963 6.05024 6.10873 6.19053 6.25095 6.37443 6.48986 6.65144 6.76715 6.94044 7.56584 7.76435 8.05718 8.12708 8.52275 9.13228 9.70835 11.20274 Molecular weight = 184.12amu Principal moments of inertia in cm(-1) A = 0.058237 B = 0.010582 C = 0.009870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 480.677718 B = 2645.336834 C = 2836.337463 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.093 3.907 3 C -0.148 4.148 4 C -0.146 4.146 5 C -0.154 4.154 6 C 0.089 3.911 7 H 0.054 0.946 8 C 0.023 3.977 9 C -0.507 4.507 10 H 0.056 0.944 11 C 0.054 3.946 12 N -0.900 5.900 13 Si 0.893 3.107 14 H -0.277 1.277 15 H -0.288 1.288 16 H -0.278 1.278 17 O -0.356 6.356 18 H 0.057 0.943 19 H 0.059 0.941 20 H 0.056 0.944 21 H 0.059 0.941 22 H 0.059 0.941 23 H 0.056 0.944 24 H 0.069 0.931 25 H 0.071 0.929 26 H 0.074 0.926 27 H 0.072 0.928 28 H 0.024 0.976 29 H 0.028 0.972 30 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.894 4.340 9.170 12.266 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.053 3.947 3 C -0.206 4.206 4 C -0.184 4.184 5 C -0.191 4.191 6 C 0.032 3.968 7 H 0.072 0.928 8 C -0.014 4.014 9 C -0.545 4.545 10 H 0.075 0.925 11 C -0.146 4.146 12 N -0.540 5.540 13 Si 0.721 3.279 14 H -0.202 1.202 15 H -0.214 1.214 16 H -0.203 1.203 17 O -0.276 6.276 18 H 0.076 0.924 19 H 0.078 0.922 20 H 0.075 0.925 21 H 0.079 0.921 22 H 0.078 0.922 23 H 0.075 0.925 24 H 0.088 0.912 25 H 0.090 0.910 26 H 0.092 0.908 27 H 0.091 0.909 28 H 0.042 0.958 29 H 0.046 0.954 30 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -6.760 4.383 8.867 11.980 hybrid contribution -0.213 -0.359 -0.734 0.844 sum -6.973 4.024 8.133 11.444 Atomic orbital electron populations 1.22066 0.95182 1.02055 1.01460 1.22083 0.93313 0.92797 0.86529 1.22028 1.01822 0.95449 1.01287 1.23163 0.98300 0.99337 0.97575 1.23357 0.97821 1.00190 0.97763 1.23220 0.93945 0.87315 0.92275 0.92771 1.19266 0.91125 0.97464 0.93523 1.21154 0.93099 1.44370 0.95900 0.92547 1.25006 0.94880 0.95909 0.98845 1.69950 1.01006 1.50094 1.32997 0.86642 0.78116 0.79133 0.84019 1.20248 1.21411 1.20334 1.88673 1.70347 1.40698 1.27888 0.92422 0.92215 0.92476 0.92141 0.92221 0.92532 0.91247 0.91045 0.90775 0.90924 0.95806 0.95366 0.93080 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.15 8.76 37.15 0.33 -1.83 16 2 C 0.09 1.56 1.28 -89.90 -0.12 1.44 16 3 C -0.15 -2.23 8.74 37.16 0.32 -1.91 16 4 C -0.15 -2.17 6.07 -24.78 -0.15 -2.32 16 5 C -0.15 -2.69 6.57 -24.48 -0.16 -2.85 16 6 C 0.09 1.98 3.35 -25.70 -0.09 1.89 16 7 H 0.05 1.20 8.14 -51.93 -0.42 0.78 16 8 C 0.02 0.62 4.71 -27.88 -0.13 0.49 16 9 C -0.51 -15.02 9.00 -34.44 -0.31 -15.33 16 10 H 0.06 1.66 7.74 -52.49 -0.41 1.26 16 11 C 0.05 1.60 5.46 -17.82 -0.10 1.50 16 12 N -0.90 -27.75 13.29 55.43 0.74 -27.02 16 13 Si 0.89 22.53 29.54 -169.99 -5.02 17.51 16 14 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 15 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 16 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 17 O -0.36 -7.94 10.28 -35.23 -0.36 -8.30 16 18 H 0.06 0.67 8.14 -51.92 -0.42 0.24 16 19 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 20 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 21 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 22 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 23 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 24 H 0.07 0.94 7.85 -51.93 -0.41 0.53 16 25 H 0.07 0.91 7.82 -51.93 -0.41 0.50 16 26 H 0.07 1.32 8.06 -51.93 -0.42 0.90 16 27 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 28 H 0.02 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 30 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 LS Contribution 249.55 15.07 3.76 3.76 Total: -1.00 -31.49 249.55 -6.29 -37.78 By element: Atomic # 1 Polarization: 0.18 SS G_CDS: -5.00 Total: -4.82 kcal Atomic # 6 Polarization: -18.51 SS G_CDS: -0.40 Total: -18.91 kcal Atomic # 7 Polarization: -27.75 SS G_CDS: 0.74 Total: -27.02 kcal Atomic # 8 Polarization: -7.94 SS G_CDS: -0.36 Total: -8.30 kcal Atomic # 14 Polarization: 22.53 SS G_CDS: -5.02 Total: 17.51 kcal Total LS contribution 3.76 Total: 3.76 kcal Total: -31.49 -6.29 -37.78 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075540248.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.797 kcal (2) G-P(sol) polarization free energy of solvation -31.492 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.288 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.288 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.780 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.576 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds