Wall clock time and date at job start Mon Mar 30 2020 02:21:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53000 * 109.89779 * 2 1 4 4 C 1.54388 * 109.82990 * 120.93142 * 2 1 3 5 5 C 1.55308 * 102.43740 * 140.97207 * 4 2 1 6 6 C 1.54952 * 100.93825 * 325.76522 * 5 4 2 7 7 H 1.08998 * 110.31173 * 277.52833 * 6 5 4 8 8 C 1.52996 * 110.30709 * 155.46169 * 6 5 4 9 9 C 1.50701 * 109.47187 * 175.00013 * 8 6 5 10 10 H 1.07998 * 120.00043 * 359.97438 * 9 8 6 11 11 C 1.37882 * 120.00156 * 180.02562 * 9 8 6 12 12 N 1.31515 * 119.99919 * 0.02562 * 11 9 8 13 13 Si 1.86798 * 120.00101 * 179.97438 * 11 9 8 14 14 H 1.48501 * 109.46794 * 59.99816 * 13 11 9 15 15 H 1.48495 * 109.47178 * 179.97438 * 13 11 9 16 16 H 1.48503 * 109.47179 * 299.99933 * 13 11 9 17 17 O 1.43640 * 105.13916 * 36.44606 * 6 5 4 18 18 H 1.09011 * 109.47343 * 299.06806 * 1 2 3 19 19 H 1.08996 * 109.47368 * 59.06787 * 1 2 3 20 20 H 1.09001 * 109.47534 * 179.07170 * 1 2 3 21 21 H 1.09006 * 109.46954 * 180.93277 * 3 2 1 22 22 H 1.09003 * 109.46999 * 300.92978 * 3 2 1 23 23 H 1.08999 * 109.47602 * 60.93273 * 3 2 1 24 24 H 1.09002 * 110.84891 * 22.67796 * 4 2 1 25 25 H 1.09001 * 110.84460 * 259.25989 * 4 2 1 26 26 H 1.09000 * 111.12817 * 83.68227 * 5 4 2 27 27 H 1.08998 * 111.12300 * 207.80930 * 5 4 2 28 28 H 1.08997 * 109.47291 * 294.99838 * 8 6 5 29 29 H 1.08999 * 109.47679 * 54.99835 * 8 6 5 30 30 H 0.96996 * 119.99861 * 180.02562 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0507 1.4387 0.0000 4 6 2.0537 -0.7465 1.2458 5 6 3.2755 -1.5220 0.6820 6 6 2.7811 -1.8489 -0.7497 7 1 2.1476 -2.7358 -0.7380 8 6 3.9715 -2.0600 -1.6873 9 6 3.4735 -2.4962 -3.0411 10 1 2.4140 -2.6116 -3.2153 11 6 4.3707 -2.7488 -4.0572 12 7 5.6611 -2.6097 -3.8447 13 14 3.7535 -3.2901 -5.7351 14 1 2.8618 -2.2433 -6.2958 15 1 4.9089 -3.4949 -6.6451 16 1 2.9989 -4.5618 -5.5984 17 8 2.0217 -0.6993 -1.1560 18 1 -0.3634 0.4993 0.8983 19 1 -0.3634 0.5282 -0.8815 20 1 -0.3634 -1.0275 -0.0166 21 1 3.1406 1.4306 -0.0167 22 1 1.6776 1.9601 -0.8816 23 1 1.7049 1.9503 0.8982 24 1 1.3011 -1.4349 1.6304 25 1 2.3638 -0.0425 2.0180 26 1 4.1637 -0.8908 0.6563 27 1 3.4599 -2.4326 1.2520 28 1 4.5253 -1.1266 -1.7873 29 1 4.6261 -2.8285 -1.2761 30 1 6.2922 -2.7871 -4.5596 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000075540248.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:21:15 Heat of formation + Delta-G solvation = -89.639371 kcal Electronic energy + Delta-G solvation = -11585.212440 eV Core-core repulsion = 9571.794946 eV Total energy + Delta-G solvation = -2013.417494 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.120 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -40.60649 -35.59945 -34.00123 -32.95282 -30.38889 -28.17970 -26.52441 -23.72064 -21.96638 -20.72380 -18.48470 -17.35418 -16.68968 -16.17290 -15.27545 -14.66503 -14.51427 -14.11053 -13.92844 -13.37366 -13.22877 -13.02767 -12.85991 -12.51824 -12.44723 -12.41541 -12.26988 -11.63419 -11.45944 -11.38472 -10.94396 -10.58095 -10.21743 -8.19830 -6.28894 1.37302 1.41514 1.49374 2.41100 2.99183 3.16084 3.71024 3.97282 4.00075 4.23491 4.31510 4.42477 4.71855 4.78876 4.81748 4.88782 4.95553 4.98126 5.04382 5.10914 5.21010 5.33575 5.41068 5.48610 5.63676 5.78858 6.21860 6.55788 6.83986 7.38166 8.91928 Molecular weight = 184.12amu Principal moments of inertia in cm(-1) A = 0.058237 B = 0.010582 C = 0.009870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 480.677718 B = 2645.336834 C = 2836.337463 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.074 3.926 3 C -0.147 4.147 4 C -0.133 4.133 5 C -0.149 4.149 6 C 0.091 3.909 7 H 0.050 0.950 8 C 0.028 3.972 9 C -0.532 4.532 10 H 0.051 0.949 11 C -0.002 4.002 12 N -0.934 5.934 13 Si 0.964 3.036 14 H -0.272 1.272 15 H -0.279 1.279 16 H -0.265 1.265 17 O -0.395 6.395 18 H 0.093 0.907 19 H 0.050 0.950 20 H 0.052 0.948 21 H 0.043 0.957 22 H 0.050 0.950 23 H 0.095 0.905 24 H 0.088 0.912 25 H 0.101 0.899 26 H 0.065 0.935 27 H 0.091 0.909 28 H -0.009 1.009 29 H 0.011 0.989 30 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.303 4.565 10.075 13.831 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.035 3.965 3 C -0.204 4.204 4 C -0.170 4.170 5 C -0.186 4.186 6 C 0.034 3.966 7 H 0.068 0.932 8 C -0.009 4.009 9 C -0.570 4.570 10 H 0.069 0.931 11 C -0.199 4.199 12 N -0.574 5.574 13 Si 0.788 3.212 14 H -0.198 1.198 15 H -0.204 1.204 16 H -0.190 1.190 17 O -0.316 6.316 18 H 0.112 0.888 19 H 0.070 0.930 20 H 0.071 0.929 21 H 0.062 0.938 22 H 0.069 0.931 23 H 0.113 0.887 24 H 0.107 0.893 25 H 0.120 0.880 26 H 0.084 0.916 27 H 0.110 0.890 28 H 0.009 0.991 29 H 0.029 0.971 30 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -8.180 4.612 9.789 13.565 hybrid contribution 0.236 -0.384 -1.001 1.097 sum -7.944 4.228 8.788 12.579 Atomic orbital electron populations 1.22045 0.93138 1.02199 1.02884 1.22561 0.94982 0.93213 0.85776 1.22044 1.00743 0.94794 1.02806 1.23158 0.97031 0.99634 0.97162 1.23285 0.98791 1.01453 0.95116 1.22947 0.92186 0.87756 0.93712 0.93174 1.19122 0.92732 0.95000 0.94085 1.21515 0.93010 1.44893 0.97552 0.93076 1.25948 0.95024 0.95719 1.03187 1.70074 1.02236 1.50683 1.34456 0.85519 0.77879 0.79074 0.78685 1.19775 1.20382 1.18963 1.88611 1.70629 1.40920 1.31393 0.88831 0.93035 0.92910 0.93797 0.93131 0.88679 0.89330 0.88009 0.91636 0.89000 0.99099 0.97059 0.92749 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.78 8.76 71.98 0.63 -3.15 16 2 C 0.07 2.33 1.28 -10.32 -0.01 2.32 16 3 C -0.15 -4.14 8.74 71.98 0.63 -3.51 16 4 C -0.13 -3.51 6.07 31.86 0.19 -3.31 16 5 C -0.15 -5.05 6.57 32.05 0.21 -4.84 16 6 C 0.09 4.09 3.35 31.26 0.10 4.19 16 7 H 0.05 2.25 8.14 -2.39 -0.02 2.23 16 8 C 0.03 1.55 4.71 29.85 0.14 1.69 16 9 C -0.53 -32.39 9.00 25.60 0.23 -32.16 16 10 H 0.05 3.09 7.74 -2.91 -0.02 3.06 16 11 C 0.00 -0.09 5.46 84.66 0.46 0.37 16 12 N -0.93 -58.79 13.29 21.45 0.28 -58.50 16 13 Si 0.96 46.58 29.54 68.60 2.03 48.60 16 14 H -0.27 -12.90 7.11 99.48 0.71 -12.19 16 15 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 16 H -0.26 -12.18 7.11 99.48 0.71 -11.48 16 17 O -0.39 -17.75 10.28 -148.98 -1.53 -19.28 16 18 H 0.09 1.75 8.14 -2.38 -0.02 1.73 16 19 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 20 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 21 H 0.04 1.36 8.14 -2.38 -0.02 1.34 16 22 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 23 H 0.09 1.92 8.14 -2.39 -0.02 1.90 16 24 H 0.09 2.03 7.85 -2.39 -0.02 2.01 16 25 H 0.10 2.11 7.82 -2.39 -0.02 2.10 16 26 H 0.06 2.31 8.06 -2.39 -0.02 2.29 16 27 H 0.09 2.73 8.14 -2.39 -0.02 2.71 16 28 H -0.01 -0.58 8.14 -2.39 -0.02 -0.60 16 29 H 0.01 0.65 8.14 -2.39 -0.02 0.63 16 30 H 0.26 15.56 8.31 -92.71 -0.77 14.79 16 Total: -1.00 -69.49 249.55 4.44 -65.04 By element: Atomic # 1 Polarization: 1.47 SS G_CDS: 1.08 Total: 2.54 kcal Atomic # 6 Polarization: -40.99 SS G_CDS: 2.59 Total: -38.40 kcal Atomic # 7 Polarization: -58.79 SS G_CDS: 0.28 Total: -58.50 kcal Atomic # 8 Polarization: -17.75 SS G_CDS: -1.53 Total: -19.28 kcal Atomic # 14 Polarization: 46.58 SS G_CDS: 2.03 Total: 48.60 kcal Total: -69.49 4.44 -65.04 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075540248.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.599 kcal (2) G-P(sol) polarization free energy of solvation -69.485 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.084 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.445 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.041 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.639 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds