Wall clock time and date at job start Mon Mar 30 2020 02:22:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53005 * 109.48970 * 2 1 4 4 O 1.42897 * 109.48587 * 239.96611 * 2 1 3 5 5 C 1.42902 * 114.10161 * 178.85911 * 4 2 1 6 6 C 1.53086 * 109.41353 * 61.15867 * 5 4 2 7 7 C 1.53193 * 109.21588 * 302.42301 * 6 5 4 8 8 C 1.53098 * 109.48112 * 120.02029 * 2 1 3 9 9 H 1.08997 * 109.51843 * 57.62422 * 8 2 1 10 10 C 1.50697 * 109.52112 * 297.50309 * 8 2 1 11 11 H 1.07991 * 120.00449 * 359.84510 * 10 8 2 12 12 C 1.37885 * 119.99686 * 180.12341 * 10 8 2 13 13 N 1.31516 * 119.99913 * 359.72095 * 12 10 8 14 14 Si 1.86798 * 119.99766 * 179.72528 * 12 10 8 15 15 H 1.48493 * 109.47326 * 90.00142 * 14 12 10 16 16 H 1.48506 * 109.46545 * 209.99892 * 14 12 10 17 17 H 1.48498 * 109.47210 * 329.99603 * 14 12 10 18 18 H 1.08994 * 109.47107 * 299.97394 * 1 2 3 19 19 H 1.08996 * 109.46557 * 59.97791 * 1 2 3 20 20 H 1.09003 * 109.46706 * 179.97438 * 1 2 3 21 21 H 1.08998 * 109.47182 * 180.02562 * 3 2 1 22 22 H 1.09006 * 109.46457 * 300.02258 * 3 2 1 23 23 H 1.08996 * 109.47608 * 60.02103 * 3 2 1 24 24 H 1.09001 * 109.48074 * 181.14301 * 5 4 2 25 25 H 1.08999 * 109.48188 * 301.16272 * 5 4 2 26 26 H 1.09003 * 109.52757 * 62.29907 * 6 5 4 27 27 H 1.09005 * 109.52496 * 182.42668 * 6 5 4 28 28 H 1.08999 * 109.49376 * 297.05241 * 7 6 5 29 29 H 1.09001 * 109.59471 * 176.78443 * 7 6 5 30 30 H 0.97000 * 119.99651 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0405 1.4424 0.0000 4 8 2.0067 -0.6742 -1.1662 5 6 3.4308 -0.7094 -1.2789 6 6 4.0177 -1.4600 -0.0807 7 6 3.5711 -0.7720 1.2132 8 6 2.0406 -0.7221 1.2497 9 1 1.6434 -1.7369 1.2717 10 6 1.5902 0.0218 2.4805 11 1 1.0009 0.9214 2.3823 12 6 1.9353 -0.4431 3.7318 13 7 2.6530 -1.5387 3.8514 14 14 1.3835 0.4832 5.2572 15 1 0.0647 -0.0352 5.7012 16 1 2.3810 0.2913 6.3406 17 1 1.2664 1.9297 4.9426 18 1 -0.3633 0.5134 0.8902 19 1 -0.3632 0.5142 -0.8898 20 1 -0.3633 -1.0277 -0.0005 21 1 3.1305 1.4420 -0.0005 22 1 1.6769 1.9564 -0.8899 23 1 1.6777 1.9563 0.8901 24 1 3.7101 -1.2204 -2.2003 25 1 3.8193 0.3089 -1.2959 26 1 3.6614 -2.4902 -0.0860 27 1 5.1059 -1.4506 -0.1423 28 1 3.9698 0.2420 1.2423 29 1 3.9382 -1.3344 2.0717 30 1 2.8955 -1.8659 4.7318 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000075540258.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:22:04 Heat of formation + Delta-G solvation = -65.086296 kcal Electronic energy + Delta-G solvation = -12159.479584 eV Core-core repulsion = 10147.126791 eV Total energy + Delta-G solvation = -2012.352792 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.120 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -38.96873 -33.88378 -32.45836 -31.36237 -27.30037 -26.45619 -25.02757 -22.12292 -20.71957 -18.21169 -16.21256 -15.44245 -14.75949 -14.36919 -13.79336 -13.39608 -12.71402 -12.26403 -12.04847 -11.57606 -11.24153 -11.08598 -11.00101 -10.82021 -10.67355 -10.47268 -10.19575 -9.81012 -9.71628 -9.06580 -8.73275 -8.39869 -8.08551 -5.97998 -4.03675 3.29799 3.36916 3.39147 4.41802 4.69601 5.31401 5.75887 5.81286 5.93463 5.96491 6.09747 6.16782 6.30356 6.42849 6.61889 6.65078 6.68145 6.75324 6.91345 7.05519 7.11303 7.23434 7.46284 7.73269 7.94605 8.03713 8.21113 8.51275 8.98798 9.59809 11.08035 Molecular weight = 184.12amu Principal moments of inertia in cm(-1) A = 0.049973 B = 0.015741 C = 0.013462 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 560.171721 B = 1778.408640 C = 2079.429269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.111 3.889 3 C -0.163 4.163 4 O -0.392 6.392 5 C 0.065 3.935 6 C -0.157 4.157 7 C -0.113 4.113 8 C 0.035 3.965 9 H 0.031 0.969 10 C -0.507 4.507 11 H 0.059 0.941 12 C 0.061 3.939 13 N -0.890 5.890 14 Si 0.888 3.112 15 H -0.281 1.281 16 H -0.288 1.288 17 H -0.275 1.275 18 H 0.075 0.925 19 H 0.038 0.962 20 H 0.052 0.948 21 H 0.053 0.947 22 H 0.036 0.964 23 H 0.072 0.928 24 H 0.072 0.928 25 H 0.041 0.959 26 H 0.058 0.942 27 H 0.049 0.951 28 H 0.037 0.963 29 H 0.091 0.909 30 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.494 2.668 -5.718 6.329 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.073 3.927 3 C -0.220 4.220 4 O -0.312 6.312 5 C -0.012 4.012 6 C -0.195 4.195 7 C -0.151 4.151 8 C 0.016 3.984 9 H 0.049 0.951 10 C -0.545 4.545 11 H 0.078 0.922 12 C -0.140 4.140 13 N -0.529 5.529 14 Si 0.717 3.283 15 H -0.207 1.207 16 H -0.213 1.213 17 H -0.200 1.200 18 H 0.094 0.906 19 H 0.057 0.943 20 H 0.071 0.929 21 H 0.072 0.928 22 H 0.055 0.945 23 H 0.091 0.909 24 H 0.091 0.909 25 H 0.060 0.940 26 H 0.077 0.923 27 H 0.068 0.932 28 H 0.056 0.944 29 H 0.109 0.891 30 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 0.446 2.477 -5.706 6.237 hybrid contribution 0.066 0.518 1.122 1.238 sum 0.512 2.995 -4.584 5.500 Atomic orbital electron populations 1.21628 0.93768 1.01707 1.00821 1.21675 0.93825 0.91022 0.86153 1.22311 1.01236 0.97487 1.00977 1.87801 1.20136 1.78248 1.45007 1.22390 0.82449 0.98740 0.97583 1.22277 0.98902 1.00494 0.97793 1.21708 0.99101 0.98694 0.95598 1.19172 0.92060 0.96250 0.90909 0.95074 1.21150 1.32912 1.10199 0.90276 0.92241 1.24968 0.95138 0.94983 0.98909 1.69898 1.37826 1.21875 1.23253 0.86651 0.78397 0.80261 0.83031 1.20734 1.21349 1.19952 0.90604 0.94268 0.92905 0.92798 0.94516 0.90891 0.90931 0.94047 0.92300 0.93179 0.94386 0.89085 0.93093 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.45 8.63 37.16 0.32 -2.13 16 2 C 0.11 2.43 0.87 -90.57 -0.08 2.35 16 3 C -0.16 -3.25 7.65 37.16 0.28 -2.97 16 4 O -0.39 -8.40 10.24 -35.23 -0.36 -8.76 16 5 C 0.07 1.22 6.52 37.20 0.24 1.46 16 6 C -0.16 -3.15 6.13 -26.59 -0.16 -3.32 16 7 C -0.11 -2.70 4.74 -26.54 -0.13 -2.82 16 8 C 0.03 0.87 1.58 -91.63 -0.15 0.72 16 9 H 0.03 0.88 8.14 -51.93 -0.42 0.46 16 10 C -0.51 -13.47 7.12 -34.44 -0.25 -13.71 16 11 H 0.06 1.54 5.69 -52.49 -0.30 1.24 16 12 C 0.06 1.67 5.30 -17.82 -0.09 1.57 16 13 N -0.89 -25.28 11.38 55.43 0.63 -24.65 16 14 Si 0.89 21.01 29.54 -169.99 -5.02 15.99 16 15 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 16 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 17 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 18 H 0.08 1.53 6.79 -51.93 -0.35 1.17 16 19 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 20 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 21 H 0.05 1.06 4.98 -51.93 -0.26 0.80 16 22 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 23 H 0.07 1.50 6.47 -51.93 -0.34 1.16 16 24 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 25 H 0.04 0.74 6.34 -51.93 -0.33 0.41 16 26 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 27 H 0.05 0.89 8.14 -51.93 -0.42 0.46 16 28 H 0.04 0.89 6.63 -51.93 -0.34 0.55 16 29 H 0.09 2.42 6.20 -51.93 -0.32 2.10 16 30 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 LS Contribution 229.40 15.07 3.46 3.46 Total: -1.00 -28.04 229.40 -5.63 -33.67 By element: Atomic # 1 Polarization: 3.46 SS G_CDS: -4.34 Total: -0.87 kcal Atomic # 6 Polarization: -18.83 SS G_CDS: 0.00 Total: -18.84 kcal Atomic # 7 Polarization: -25.28 SS G_CDS: 0.63 Total: -24.65 kcal Atomic # 8 Polarization: -8.40 SS G_CDS: -0.36 Total: -8.76 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.99 kcal Total LS contribution 3.46 Total: 3.46 kcal Total: -28.04 -5.63 -33.67 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075540258.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.417 kcal (2) G-P(sol) polarization free energy of solvation -28.036 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.453 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.634 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.669 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds