Wall clock time and date at job start Mon Mar 30 2020 02:22:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53005 * 109.48970 * 2 1 4 4 O 1.42897 * 109.48587 * 239.96611 * 2 1 3 5 5 C 1.42902 * 114.10161 * 178.85911 * 4 2 1 6 6 C 1.53086 * 109.41353 * 61.15867 * 5 4 2 7 7 C 1.53193 * 109.21588 * 302.42301 * 6 5 4 8 8 C 1.53098 * 109.48112 * 120.02029 * 2 1 3 9 9 H 1.08997 * 109.51843 * 57.62422 * 8 2 1 10 10 C 1.50697 * 109.52112 * 297.50309 * 8 2 1 11 11 H 1.07991 * 120.00449 * 359.84510 * 10 8 2 12 12 C 1.37885 * 119.99686 * 180.12341 * 10 8 2 13 13 N 1.31516 * 119.99913 * 359.72095 * 12 10 8 14 14 Si 1.86798 * 119.99766 * 179.72528 * 12 10 8 15 15 H 1.48493 * 109.47326 * 90.00142 * 14 12 10 16 16 H 1.48506 * 109.46545 * 209.99892 * 14 12 10 17 17 H 1.48498 * 109.47210 * 329.99603 * 14 12 10 18 18 H 1.08994 * 109.47107 * 299.97394 * 1 2 3 19 19 H 1.08996 * 109.46557 * 59.97791 * 1 2 3 20 20 H 1.09003 * 109.46706 * 179.97438 * 1 2 3 21 21 H 1.08998 * 109.47182 * 180.02562 * 3 2 1 22 22 H 1.09006 * 109.46457 * 300.02258 * 3 2 1 23 23 H 1.08996 * 109.47608 * 60.02103 * 3 2 1 24 24 H 1.09001 * 109.48074 * 181.14301 * 5 4 2 25 25 H 1.08999 * 109.48188 * 301.16272 * 5 4 2 26 26 H 1.09003 * 109.52757 * 62.29907 * 6 5 4 27 27 H 1.09005 * 109.52496 * 182.42668 * 6 5 4 28 28 H 1.08999 * 109.49376 * 297.05241 * 7 6 5 29 29 H 1.09001 * 109.59471 * 176.78443 * 7 6 5 30 30 H 0.97000 * 119.99651 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0405 1.4424 0.0000 4 8 2.0067 -0.6742 -1.1662 5 6 3.4308 -0.7094 -1.2789 6 6 4.0177 -1.4600 -0.0807 7 6 3.5711 -0.7720 1.2132 8 6 2.0406 -0.7221 1.2497 9 1 1.6434 -1.7369 1.2717 10 6 1.5902 0.0218 2.4805 11 1 1.0009 0.9214 2.3823 12 6 1.9353 -0.4431 3.7318 13 7 2.6530 -1.5387 3.8514 14 14 1.3835 0.4832 5.2572 15 1 0.0647 -0.0352 5.7012 16 1 2.3810 0.2913 6.3406 17 1 1.2664 1.9297 4.9426 18 1 -0.3633 0.5134 0.8902 19 1 -0.3632 0.5142 -0.8898 20 1 -0.3633 -1.0277 -0.0005 21 1 3.1305 1.4420 -0.0005 22 1 1.6769 1.9564 -0.8899 23 1 1.6777 1.9563 0.8901 24 1 3.7101 -1.2204 -2.2003 25 1 3.8193 0.3089 -1.2959 26 1 3.6614 -2.4902 -0.0860 27 1 5.1059 -1.4506 -0.1423 28 1 3.9698 0.2420 1.2423 29 1 3.9382 -1.3344 2.0717 30 1 2.8955 -1.8659 4.7318 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000075540258.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:22:04 Heat of formation + Delta-G solvation = -82.028241 kcal Electronic energy + Delta-G solvation = -12160.214242 eV Core-core repulsion = 10147.126791 eV Total energy + Delta-G solvation = -2013.087450 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.120 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -40.66953 -35.76880 -34.12456 -33.28968 -29.08952 -28.06785 -26.91209 -23.96521 -22.43003 -19.97239 -18.22317 -17.21740 -16.44438 -16.16046 -15.55353 -15.06955 -14.52447 -13.95836 -13.85554 -13.28246 -12.90166 -12.87822 -12.68450 -12.65689 -12.38939 -12.26092 -11.93862 -11.64569 -11.54754 -10.82286 -10.62269 -10.41501 -9.88980 -8.05222 -6.17600 1.42297 1.43511 1.52686 2.44434 3.10919 3.22151 4.18319 4.20958 4.28599 4.35821 4.48821 4.59522 4.72545 4.88742 4.91640 5.01092 5.06433 5.12095 5.23822 5.36330 5.41523 5.46963 5.58174 5.68711 5.96525 6.11022 6.29362 6.66140 6.94118 7.49085 8.99817 Molecular weight = 184.12amu Principal moments of inertia in cm(-1) A = 0.049973 B = 0.015741 C = 0.013462 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 560.171721 B = 1778.408640 C = 2079.429269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.110 3.890 3 C -0.155 4.155 4 O -0.402 6.402 5 C 0.062 3.938 6 C -0.152 4.152 7 C -0.110 4.110 8 C 0.033 3.967 9 H -0.015 1.015 10 C -0.514 4.514 11 H 0.065 0.935 12 C 0.009 3.991 13 N -0.922 5.922 14 Si 0.951 3.049 15 H -0.279 1.279 16 H -0.289 1.289 17 H -0.264 1.264 18 H 0.070 0.930 19 H 0.066 0.934 20 H 0.041 0.959 21 H 0.053 0.947 22 H 0.062 0.938 23 H 0.063 0.937 24 H 0.107 0.893 25 H 0.056 0.944 26 H 0.044 0.956 27 H 0.077 0.923 28 H 0.038 0.962 29 H 0.056 0.944 30 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.487 4.033 -6.718 7.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.071 3.929 3 C -0.213 4.213 4 O -0.323 6.323 5 C -0.014 4.014 6 C -0.190 4.190 7 C -0.148 4.148 8 C 0.014 3.986 9 H 0.003 0.997 10 C -0.552 4.552 11 H 0.083 0.917 12 C -0.189 4.189 13 N -0.562 5.562 14 Si 0.777 3.223 15 H -0.205 1.205 16 H -0.215 1.215 17 H -0.188 1.188 18 H 0.089 0.911 19 H 0.085 0.915 20 H 0.060 0.940 21 H 0.072 0.928 22 H 0.081 0.919 23 H 0.082 0.918 24 H 0.125 0.875 25 H 0.075 0.925 26 H 0.063 0.937 27 H 0.095 0.905 28 H 0.057 0.943 29 H 0.075 0.925 30 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 0.435 3.851 -6.719 7.756 hybrid contribution 0.087 0.050 1.405 1.409 sum 0.522 3.900 -5.314 6.612 Atomic orbital electron populations 1.21607 0.92839 1.01409 1.01909 1.21616 0.94763 0.91727 0.84776 1.22217 1.01203 0.96042 1.01804 1.87790 1.21839 1.78363 1.44270 1.22620 0.80975 0.99792 0.98036 1.22220 1.00690 0.99452 0.96617 1.21545 0.98289 0.98491 0.96457 1.19131 0.92849 0.94033 0.92597 0.99652 1.21481 1.32436 1.10253 0.91044 0.91672 1.25753 0.95398 0.95814 1.01937 1.70057 1.39083 1.23375 1.23650 0.85659 0.77766 0.79490 0.79382 1.20459 1.21459 1.18792 0.91073 0.91536 0.93965 0.92779 0.91893 0.91771 0.87528 0.92540 0.93668 0.90477 0.94320 0.92538 0.93335 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.69 8.63 71.98 0.62 -4.07 16 2 C 0.11 4.64 0.87 -10.76 -0.01 4.63 16 3 C -0.16 -5.82 7.65 71.98 0.55 -5.27 16 4 O -0.40 -16.40 10.24 -148.98 -1.52 -17.92 16 5 C 0.06 2.14 6.52 72.01 0.47 2.61 16 6 C -0.15 -5.93 6.13 30.69 0.19 -5.74 16 7 C -0.11 -5.26 4.74 30.72 0.15 -5.12 16 8 C 0.03 1.65 1.58 -11.45 -0.02 1.63 16 9 H -0.01 -0.87 8.14 -2.39 -0.02 -0.89 16 10 C -0.51 -27.44 7.12 25.60 0.18 -27.26 16 11 H 0.07 3.33 5.69 -2.92 -0.02 3.32 16 12 C 0.01 0.49 5.30 84.66 0.45 0.94 16 13 N -0.92 -53.74 11.38 21.45 0.24 -53.49 16 14 Si 0.95 43.23 29.54 68.60 2.03 45.26 16 15 H -0.28 -12.47 7.11 99.48 0.71 -11.77 16 16 H -0.29 -13.08 7.11 99.48 0.71 -12.37 16 17 H -0.26 -11.43 7.11 99.48 0.71 -10.72 16 18 H 0.07 2.79 6.79 -2.39 -0.02 2.77 16 19 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 20 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 21 H 0.05 2.00 4.98 -2.39 -0.01 1.98 16 22 H 0.06 2.02 8.14 -2.38 -0.02 2.00 16 23 H 0.06 2.50 6.47 -2.39 -0.02 2.48 16 24 H 0.11 2.99 8.14 -2.39 -0.02 2.97 16 25 H 0.06 1.80 6.34 -2.39 -0.02 1.79 16 26 H 0.04 1.86 8.14 -2.39 -0.02 1.84 16 27 H 0.08 2.57 8.14 -2.38 -0.02 2.55 16 28 H 0.04 1.80 6.63 -2.39 -0.02 1.78 16 29 H 0.06 3.09 6.20 -2.39 -0.01 3.07 16 30 H 0.26 14.38 8.31 -92.71 -0.77 13.61 16 Total: -1.00 -59.96 229.40 4.43 -55.53 By element: Atomic # 1 Polarization: 7.16 SS G_CDS: 1.11 Total: 8.27 kcal Atomic # 6 Polarization: -40.22 SS G_CDS: 2.58 Total: -37.64 kcal Atomic # 7 Polarization: -53.74 SS G_CDS: 0.24 Total: -53.49 kcal Atomic # 8 Polarization: -16.40 SS G_CDS: -1.52 Total: -17.92 kcal Atomic # 14 Polarization: 43.23 SS G_CDS: 2.03 Total: 45.26 kcal Total: -59.96 4.43 -55.53 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075540258.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.497 kcal (2) G-P(sol) polarization free energy of solvation -59.963 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.460 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.532 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.028 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds