Wall clock time and date at job start Mon Mar 30 2020 02:22:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53008 * 109.48428 * 2 1 4 4 O 1.43033 * 109.46687 * 239.87547 * 2 1 3 5 5 C 1.42905 * 114.12698 * 301.18691 * 4 2 1 6 6 C 1.53089 * 109.41628 * 298.83767 * 5 4 2 7 7 C 1.53175 * 109.16089 * 57.61247 * 6 5 4 8 8 C 1.53089 * 109.47818 * 120.02327 * 2 1 3 9 9 H 1.09005 * 109.51754 * 182.28131 * 8 2 1 10 10 C 1.50702 * 109.52608 * 302.40754 * 8 2 1 11 11 H 1.07992 * 119.99822 * 5.27874 * 10 8 2 12 12 C 1.37876 * 119.99899 * 185.28180 * 10 8 2 13 13 N 1.31520 * 120.00211 * 9.60637 * 12 10 8 14 14 Si 1.86799 * 120.00058 * 189.61053 * 12 10 8 15 15 H 1.48497 * 109.47478 * 94.98446 * 14 12 10 16 16 H 1.48493 * 109.47154 * 214.99004 * 14 12 10 17 17 H 1.48507 * 109.46637 * 334.98535 * 14 12 10 18 18 H 1.09004 * 109.47059 * 299.97578 * 1 2 3 19 19 H 1.09004 * 109.47117 * 59.97450 * 1 2 3 20 20 H 1.09000 * 109.47134 * 179.97438 * 1 2 3 21 21 H 1.09006 * 109.46499 * 180.02562 * 3 2 1 22 22 H 1.08996 * 109.46752 * 300.02372 * 3 2 1 23 23 H 1.08997 * 109.47444 * 60.03336 * 3 2 1 24 24 H 1.09006 * 109.47451 * 178.85849 * 5 4 2 25 25 H 1.09000 * 109.48882 * 58.83298 * 5 4 2 26 26 H 1.09004 * 109.52464 * 297.70637 * 6 5 4 27 27 H 1.09002 * 109.57444 * 177.54720 * 6 5 4 28 28 H 1.09004 * 109.54208 * 183.14909 * 7 6 5 29 29 H 1.09000 * 109.61382 * 62.92977 * 7 6 5 30 30 H 0.96994 * 119.99924 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0404 1.4425 0.0000 4 8 2.0067 -0.6768 -1.1664 5 6 1.5646 -2.0312 -1.2775 6 6 2.0766 -2.8336 -0.0784 7 6 1.5758 -2.1812 1.2138 8 6 2.0405 -0.7221 1.2496 9 1 3.1298 -0.6872 1.2710 10 6 1.4908 -0.0485 2.4805 11 1 0.7754 0.7545 2.3826 12 6 1.9013 -0.4574 3.7316 13 7 2.9053 -1.2984 3.8521 14 14 1.0314 0.1829 5.2557 15 1 -0.0153 -0.7849 5.6717 16 1 2.0162 0.3496 6.3544 17 1 0.4016 1.4931 4.9523 18 1 -0.3633 0.5135 0.8902 19 1 -0.3633 0.5142 -0.8898 20 1 -0.3633 -1.0277 -0.0005 21 1 3.1305 1.4421 -0.0005 22 1 1.6768 1.9564 -0.8898 23 1 1.6777 1.9562 0.8902 24 1 1.9533 -2.4660 -2.1985 25 1 0.4751 -2.0579 -1.2944 26 1 3.1665 -2.8414 -0.0839 27 1 1.7047 -3.8565 -0.1379 28 1 1.9825 -2.7147 2.0730 29 1 0.4868 -2.2179 1.2440 30 1 3.1938 -1.5864 4.7322 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000075540262.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:22:07 Heat of formation + Delta-G solvation = -66.164723 kcal Electronic energy + Delta-G solvation = -12146.555559 eV Core-core repulsion = 10134.156002 eV Total energy + Delta-G solvation = -2012.399556 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.120 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -38.97403 -33.86036 -32.46842 -31.42109 -27.33477 -26.46346 -25.00742 -22.15812 -20.75506 -18.23138 -16.22125 -15.44370 -14.78266 -14.37240 -13.79629 -13.42430 -12.71527 -12.30162 -12.02202 -11.58350 -11.25190 -11.13602 -11.00242 -10.87328 -10.67576 -10.48865 -10.23153 -9.81765 -9.75591 -9.09083 -8.76931 -8.34350 -8.11802 -6.01409 -4.02304 3.29734 3.37626 3.39577 4.42261 4.68330 5.30426 5.72762 5.78521 5.92047 5.92902 6.07585 6.15495 6.27482 6.42569 6.57655 6.64151 6.68774 6.70688 6.87561 7.02837 7.11962 7.18972 7.39219 7.70690 7.92587 7.96224 8.15438 8.51006 9.00383 9.59957 11.07953 Molecular weight = 184.12amu Principal moments of inertia in cm(-1) A = 0.049604 B = 0.015580 C = 0.013593 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 564.331959 B = 1796.775366 C = 2059.402708 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.112 3.888 3 C -0.121 4.121 4 O -0.392 6.392 5 C 0.066 3.934 6 C -0.157 4.157 7 C -0.108 4.108 8 C 0.033 3.967 9 H 0.038 0.962 10 C -0.510 4.510 11 H 0.060 0.940 12 C 0.064 3.936 13 N -0.887 5.887 14 Si 0.885 3.115 15 H -0.282 1.282 16 H -0.288 1.288 17 H -0.274 1.274 18 H 0.072 0.928 19 H 0.036 0.964 20 H 0.053 0.947 21 H 0.052 0.948 22 H 0.038 0.962 23 H 0.076 0.924 24 H 0.073 0.927 25 H 0.042 0.958 26 H 0.060 0.940 27 H 0.050 0.950 28 H 0.073 0.927 29 H 0.040 0.960 30 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.221 -0.059 -5.860 6.687 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.074 3.926 3 C -0.178 4.178 4 O -0.312 6.312 5 C -0.011 4.011 6 C -0.194 4.194 7 C -0.146 4.146 8 C 0.015 3.985 9 H 0.057 0.943 10 C -0.548 4.548 11 H 0.078 0.922 12 C -0.138 4.138 13 N -0.525 5.525 14 Si 0.713 3.287 15 H -0.208 1.208 16 H -0.214 1.214 17 H -0.199 1.199 18 H 0.091 0.909 19 H 0.055 0.945 20 H 0.072 0.928 21 H 0.071 0.929 22 H 0.057 0.943 23 H 0.095 0.905 24 H 0.092 0.908 25 H 0.060 0.940 26 H 0.079 0.921 27 H 0.069 0.931 28 H 0.091 0.909 29 H 0.059 0.941 30 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -2.992 -0.052 -5.851 6.572 hybrid contribution -0.608 -0.023 1.164 1.313 sum -3.600 -0.076 -4.687 5.911 Atomic orbital electron populations 1.22328 0.97173 1.01568 1.01054 1.21699 0.92264 0.92583 0.86072 1.21613 1.01123 0.94277 1.00798 1.87832 1.74354 1.23897 1.45103 1.22375 0.97811 0.83404 0.97512 1.22262 1.01284 0.98243 0.97657 1.21652 0.98663 0.99215 0.95112 1.19186 0.97372 0.91013 0.90979 0.94338 1.21125 1.25150 1.18317 0.90223 0.92193 1.24958 0.94560 0.95388 0.98878 1.69982 1.25159 1.33993 1.23390 0.86696 0.79617 0.79215 0.83197 1.20813 1.21379 1.19862 0.90868 0.94453 0.92837 0.92874 0.94320 0.90539 0.90850 0.94024 0.92127 0.93125 0.90864 0.94119 0.93096 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.24 7.65 37.16 0.28 -2.95 16 2 C 0.11 2.43 0.87 -90.57 -0.08 2.35 16 3 C -0.12 -2.45 8.63 37.16 0.32 -2.13 16 4 O -0.39 -8.35 10.24 -35.23 -0.36 -8.71 16 5 C 0.07 1.22 6.51 37.20 0.24 1.46 16 6 C -0.16 -3.10 6.14 -26.59 -0.16 -3.26 16 7 C -0.11 -2.54 4.80 -26.55 -0.13 -2.67 16 8 C 0.03 0.83 1.45 -91.64 -0.13 0.69 16 9 H 0.04 1.09 8.09 -51.93 -0.42 0.67 16 10 C -0.51 -13.53 7.03 -34.44 -0.24 -13.77 16 11 H 0.06 1.55 5.72 -52.49 -0.30 1.25 16 12 C 0.06 1.74 5.23 -17.82 -0.09 1.65 16 13 N -0.89 -25.40 12.20 55.43 0.68 -24.73 16 14 Si 0.88 21.01 29.55 -169.99 -5.02 15.98 16 15 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 16 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 17 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 18 H 0.07 1.48 6.39 -51.93 -0.33 1.15 16 19 H 0.04 0.66 8.14 -51.93 -0.42 0.23 16 20 H 0.05 1.03 4.98 -51.93 -0.26 0.78 16 21 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 22 H 0.04 0.69 8.14 -51.93 -0.42 0.26 16 23 H 0.08 1.56 6.89 -51.93 -0.36 1.20 16 24 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 25 H 0.04 0.73 6.35 -51.93 -0.33 0.40 16 26 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 27 H 0.05 0.88 8.14 -51.93 -0.42 0.45 16 28 H 0.07 1.91 7.01 -51.93 -0.36 1.54 16 29 H 0.04 0.93 6.63 -51.93 -0.34 0.58 16 30 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 LS Contribution 230.84 15.07 3.48 3.48 Total: -1.00 -28.19 230.84 -5.60 -33.79 By element: Atomic # 1 Polarization: 3.18 SS G_CDS: -4.38 Total: -1.19 kcal Atomic # 6 Polarization: -18.63 SS G_CDS: 0.01 Total: -18.62 kcal Atomic # 7 Polarization: -25.40 SS G_CDS: 0.68 Total: -24.73 kcal Atomic # 8 Polarization: -8.35 SS G_CDS: -0.36 Total: -8.71 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.98 kcal Total LS contribution 3.48 Total: 3.48 kcal Total: -28.19 -5.60 -33.79 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075540262.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.376 kcal (2) G-P(sol) polarization free energy of solvation -28.192 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.568 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.597 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.789 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.165 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds