Wall clock time and date at job start Mon Mar 30 2020 02:08:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.38558 * 2 1 4 4 N 1.46902 * 109.38703 * 240.21108 * 2 1 3 5 5 C 1.47193 * 110.17283 * 189.64835 * 4 2 1 6 6 C 1.52984 * 108.72724 * 68.99914 * 5 4 2 7 7 N 1.46005 * 110.04187 * 309.70600 * 6 5 4 8 8 C 1.37097 * 118.53768 * 198.14400 * 7 6 5 9 9 H 1.07995 * 120.00601 * 158.47845 * 8 7 6 10 10 C 1.38957 * 119.99533 * 338.74952 * 8 7 6 11 11 N 1.31407 * 120.00200 * 343.39888 * 10 8 7 12 12 Si 1.86806 * 119.99907 * 163.39554 * 10 8 7 13 13 H 1.48500 * 109.46857 * 60.00460 * 12 10 8 14 14 H 1.48496 * 109.47450 * 180.02562 * 12 10 8 15 15 H 1.48497 * 109.47014 * 300.00533 * 12 10 8 16 16 C 1.33716 * 122.93199 * 18.42150 * 7 6 5 17 17 O 1.21288 * 118.62887 * 178.05396 * 16 7 6 18 18 H 1.08994 * 109.47058 * 179.78795 * 1 2 3 19 19 H 1.09003 * 109.47209 * 299.78965 * 1 2 3 20 20 H 1.09004 * 109.46887 * 59.79094 * 1 2 3 21 21 H 1.00898 * 110.99695 * 313.01510 * 4 2 1 22 22 H 1.08992 * 109.59302 * 309.22268 * 5 4 2 23 23 H 1.09003 * 109.59218 * 188.77148 * 5 4 2 24 24 H 1.08995 * 109.36931 * 189.53016 * 6 5 4 25 25 H 1.08998 * 109.28241 * 69.82133 * 6 5 4 26 26 H 0.97007 * 119.99897 * 179.97438 * 11 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8918 1.0282 0.0000 4 7 2.0176 -0.6884 -1.2026 5 6 3.4710 -0.9027 -1.1107 6 6 3.7469 -1.9373 -0.0181 7 7 3.0459 -1.5688 1.2085 8 6 3.4503 -2.1354 2.3895 9 1 3.2151 -1.6548 3.3276 10 6 4.1679 -3.3254 2.3793 11 7 4.1827 -4.0745 1.2997 12 14 5.1116 -3.8601 3.9001 13 1 4.1694 -4.0192 5.0368 14 1 5.7887 -5.1544 3.6330 15 1 6.1274 -2.8314 4.2395 16 6 2.0234 -0.7073 1.2306 17 8 1.4742 -0.4843 2.2888 18 1 -0.3633 -1.0276 -0.0038 19 1 -0.3634 0.5106 0.8919 20 1 -0.3633 0.5171 -0.8881 21 1 1.5315 -1.5616 -1.3415 22 1 3.9636 0.0362 -0.8579 23 1 3.8474 -1.2700 -2.0655 24 1 4.8184 -1.9804 0.1767 25 1 3.4005 -2.9152 -0.3527 26 1 4.6839 -4.9050 1.2925 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082476269.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:54 Heat of formation + Delta-G solvation = -24.448469 kcal Electronic energy + Delta-G solvation = -11699.785908 eV Core-core repulsion = 9585.654960 eV Total energy + Delta-G solvation = -2114.130947 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 184.095 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -39.39433 -35.54027 -34.75746 -31.60196 -30.11499 -26.86956 -25.31742 -22.50021 -21.85425 -18.76151 -17.16293 -15.91258 -14.86874 -14.51728 -14.41545 -14.14406 -13.77709 -12.72195 -12.09290 -12.04061 -11.76059 -11.33189 -11.11804 -10.93470 -10.76701 -10.56330 -10.30397 -10.20701 -9.22122 -8.95243 -7.70825 -7.59270 -6.29824 -3.91320 3.16977 3.22679 3.27030 3.88848 4.10065 4.58533 4.95873 5.07657 5.48842 5.64520 5.74888 5.90908 6.00389 6.20334 6.31504 6.42666 6.61615 6.74368 7.20711 7.31610 7.56096 7.73608 8.15867 8.45152 9.17626 9.45030 9.95609 10.67895 Molecular weight = 184.10amu Principal moments of inertia in cm(-1) A = 0.059194 B = 0.014878 C = 0.012701 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 472.909553 B = 1881.537747 C = 2204.021313 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.076 3.924 3 H 0.092 0.908 4 N -0.679 5.679 5 C 0.030 3.970 6 C 0.099 3.901 7 N -0.438 5.438 8 C -0.312 4.312 9 H 0.099 0.901 10 C 0.031 3.969 11 N -0.882 5.882 12 Si 0.927 3.073 13 H -0.273 1.273 14 H -0.284 1.284 15 H -0.274 1.274 16 C 0.414 3.586 17 O -0.596 6.596 18 H 0.052 0.948 19 H 0.069 0.931 20 H 0.060 0.940 21 H 0.341 0.659 22 H 0.068 0.932 23 H 0.084 0.916 24 H 0.066 0.934 25 H 0.088 0.912 26 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.270 2.957 -5.347 6.116 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.037 4.037 3 H 0.110 0.890 4 N -0.309 5.309 5 C -0.100 4.100 6 C -0.026 4.026 7 N -0.157 5.157 8 C -0.440 4.440 9 H 0.117 0.883 10 C -0.172 4.172 11 N -0.522 5.522 12 Si 0.753 3.247 13 H -0.198 1.198 14 H -0.209 1.209 15 H -0.199 1.199 16 C 0.201 3.799 17 O -0.480 6.480 18 H 0.071 0.929 19 H 0.088 0.912 20 H 0.079 0.921 21 H 0.159 0.841 22 H 0.086 0.914 23 H 0.102 0.898 24 H 0.085 0.915 25 H 0.106 0.894 26 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -0.379 3.460 -5.284 6.328 hybrid contribution 0.740 -1.196 1.283 1.903 sum 0.361 2.265 -4.001 4.612 Atomic orbital electron populations 1.21598 0.92889 1.02162 1.01947 1.21588 0.96630 0.98677 0.86823 0.88978 1.61184 1.04715 1.27922 1.37129 1.22596 0.88833 0.99454 0.99106 1.22056 0.98288 0.97939 0.84298 1.43272 1.26873 1.37768 1.07744 1.19678 1.32751 1.04997 0.86574 0.88287 1.25331 0.98379 0.94996 0.98528 1.69970 1.40701 1.12688 1.28794 0.85987 0.79681 0.77604 0.81385 1.19774 1.20916 1.19945 1.20596 0.82271 0.85677 0.91343 1.90502 1.58043 1.67515 1.31976 0.92894 0.91165 0.92117 0.84132 0.91365 0.89814 0.91510 0.89448 0.92200 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.20 9.06 37.16 0.34 -1.86 15 2 C 0.08 1.49 3.31 -69.07 -0.23 1.26 15 3 H 0.09 1.72 8.14 -51.93 -0.42 1.30 15 4 N -0.68 -11.97 6.70 -107.96 -0.72 -12.69 15 5 C 0.03 0.53 6.66 -3.67 -0.02 0.51 15 6 C 0.10 2.23 4.83 -4.32 -0.02 2.21 15 7 N -0.44 -11.51 2.98 -115.65 -0.34 -11.85 15 8 C -0.31 -8.95 9.13 -14.93 -0.14 -9.08 15 9 H 0.10 3.00 7.26 -52.49 -0.38 2.61 15 10 C 0.03 0.82 5.04 -17.47 -0.09 0.74 15 11 N -0.88 -23.61 10.59 55.50 0.59 -23.02 15 12 Si 0.93 21.04 29.58 -169.99 -5.03 16.01 15 13 H -0.27 -6.24 7.11 56.52 0.40 -5.84 15 14 H -0.28 -6.26 7.11 56.52 0.40 -5.86 15 15 H -0.27 -6.13 7.11 56.52 0.40 -5.73 15 16 C 0.41 10.52 7.08 -11.67 -0.08 10.43 15 17 O -0.60 -17.23 15.66 5.55 0.09 -17.14 15 18 H 0.05 0.92 8.14 -51.93 -0.42 0.50 15 19 H 0.07 1.26 7.80 -51.93 -0.41 0.85 15 20 H 0.06 0.87 8.14 -51.93 -0.42 0.44 15 21 H 0.34 5.94 8.57 -39.29 -0.34 5.61 15 22 H 0.07 1.19 8.08 -51.93 -0.42 0.77 15 23 H 0.08 1.26 8.14 -51.93 -0.42 0.84 15 24 H 0.07 1.56 7.63 -51.93 -0.40 1.17 15 25 H 0.09 2.10 6.82 -51.93 -0.35 1.74 15 26 H 0.27 6.79 8.31 -40.82 -0.34 6.45 15 LS Contribution 218.95 15.07 3.30 3.30 Total: -1.00 -30.84 218.95 -5.49 -36.33 By element: Atomic # 1 Polarization: 7.98 SS G_CDS: -3.12 Total: 4.86 kcal Atomic # 6 Polarization: 4.45 SS G_CDS: -0.24 Total: 4.20 kcal Atomic # 7 Polarization: -47.08 SS G_CDS: -0.48 Total: -47.56 kcal Atomic # 8 Polarization: -17.23 SS G_CDS: 0.09 Total: -17.14 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.03 Total: 16.01 kcal Total LS contribution 3.30 Total: 3.30 kcal Total: -30.84 -5.49 -36.33 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082476269.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.877 kcal (2) G-P(sol) polarization free energy of solvation -30.840 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.963 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.485 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.325 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds