Wall clock time and date at job start Mon Mar 30 2020 01:59:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31407 * 1 3 3 Si 1.86808 * 119.99594 * 2 1 4 4 H 1.48499 * 109.46863 * 240.00040 * 3 2 1 5 5 H 1.48498 * 109.46906 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.47013 * 120.00223 * 3 2 1 7 7 C 1.38948 * 120.00338 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99894 * 161.15827 * 7 2 1 9 9 N 1.37092 * 119.99966 * 341.16369 * 7 2 1 10 10 C 1.34419 * 124.35111 * 324.83977 * 9 7 2 11 11 O 1.21287 * 124.93925 * 359.59390 * 10 9 7 12 12 C 1.51284 * 110.11662 * 179.57311 * 10 9 7 13 13 C 1.54630 * 104.19468 * 343.74672 * 12 10 9 14 14 C 1.46768 * 124.34952 * 144.82064 * 9 7 2 15 15 H 1.08994 * 110.24762 * 77.94439 * 14 9 7 16 16 C 1.52998 * 110.24166 * 316.03269 * 14 9 7 17 17 N 1.46894 * 109.47284 * 56.46101 * 16 14 9 18 18 H 0.96993 * 120.00525 * 359.97438 * 1 2 3 19 19 H 1.09002 * 110.48305 * 102.42768 * 12 10 9 20 20 H 1.08997 * 110.48233 * 225.06877 * 12 10 9 21 21 H 1.08996 * 110.96598 * 266.68069 * 13 12 10 22 22 H 1.08999 * 110.96591 * 142.92069 * 13 12 10 23 23 H 1.09000 * 109.47806 * 296.45443 * 16 14 9 24 24 H 1.09002 * 109.47159 * 176.45799 * 16 14 9 25 25 H 1.00899 * 111.00185 * 56.04103 * 17 16 14 26 26 H 1.00901 * 111.00143 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6179 0.0000 4 1 3.1017 1.6965 -1.2125 5 1 1.2829 2.7465 0.0006 6 1 3.1018 1.6965 1.2125 7 6 2.0089 -1.2033 -0.0005 8 1 3.0455 -1.2281 -0.3026 9 7 1.3785 -2.3589 0.3823 10 6 0.4438 -2.4297 1.3456 11 8 0.0469 -1.4881 1.9990 12 6 -0.0416 -3.8547 1.4960 13 6 0.4342 -4.5558 0.2025 14 6 1.6374 -3.6778 -0.2074 15 1 2.5627 -4.0940 0.1907 16 6 1.7189 -3.5695 -1.7314 17 7 2.7525 -2.5923 -2.0982 18 1 -0.4850 0.8399 0.0004 19 1 0.4105 -4.3213 2.3713 20 1 -1.1289 -3.8818 1.5668 21 1 -0.3429 -4.5339 -0.5615 22 1 0.7496 -5.5790 0.4068 23 1 0.7557 -3.2446 -2.1247 24 1 1.9734 -4.5425 -2.1517 25 1 3.6425 -2.8372 -1.6910 26 1 2.8261 -2.5029 -3.1006 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082631911.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:37 Heat of formation + Delta-G solvation = -42.678720 kcal Electronic energy + Delta-G solvation = -11793.282077 eV Core-core repulsion = 9678.360607 eV Total energy + Delta-G solvation = -2114.921470 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 184.095 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -40.77350 -37.15794 -34.73109 -34.39447 -31.83881 -28.73785 -26.49452 -23.99336 -21.92003 -21.14399 -18.39576 -17.23943 -16.75602 -16.30441 -15.86407 -15.38888 -14.80670 -14.42906 -14.20916 -13.62434 -13.32659 -12.92906 -12.75409 -12.68605 -12.16384 -12.03475 -11.84948 -11.62182 -10.66855 -9.94120 -9.12077 -8.99315 -8.00115 -5.60114 1.43323 1.50645 1.54279 2.38758 2.57075 3.42206 3.47017 3.70666 3.90942 4.10593 4.26569 4.52610 4.61340 4.72959 4.75802 4.92194 5.14347 5.20886 5.46204 5.75442 6.32721 6.58669 6.90851 7.15071 7.42431 7.79221 8.54594 9.10229 Molecular weight = 184.10amu Principal moments of inertia in cm(-1) A = 0.041060 B = 0.020341 C = 0.014873 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 681.764107 B = 1376.192797 C = 1882.190959 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C -0.018 4.018 3 Si 0.971 3.029 4 H -0.257 1.257 5 H -0.300 1.300 6 H -0.283 1.283 7 C -0.279 4.279 8 H 0.103 0.897 9 N -0.458 5.458 10 C 0.431 3.569 11 O -0.602 6.602 12 C -0.144 4.144 13 C -0.110 4.110 14 C 0.108 3.892 15 H 0.077 0.923 16 C 0.081 3.919 17 N -0.839 5.839 18 H 0.247 0.753 19 H 0.105 0.895 20 H 0.080 0.920 21 H 0.073 0.927 22 H 0.121 0.879 23 H 0.041 0.959 24 H 0.058 0.942 25 H 0.340 0.660 26 H 0.338 0.662 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.057 -10.809 -4.095 12.617 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.219 4.219 3 Si 0.798 3.202 4 H -0.181 1.181 5 H -0.227 1.227 6 H -0.209 1.209 7 C -0.408 4.408 8 H 0.120 0.880 9 N -0.178 5.178 10 C 0.220 3.780 11 O -0.486 6.486 12 C -0.184 4.184 13 C -0.148 4.148 14 C 0.004 3.996 15 H 0.095 0.905 16 C -0.051 4.051 17 N -0.370 5.370 18 H 0.056 0.944 19 H 0.123 0.877 20 H 0.098 0.902 21 H 0.092 0.908 22 H 0.139 0.861 23 H 0.059 0.941 24 H 0.076 0.924 25 H 0.153 0.847 26 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 4.326 -9.658 -3.455 11.132 hybrid contribution 0.382 0.450 -0.450 0.742 sum 4.708 -9.208 -3.905 11.054 Atomic orbital electron populations 1.70084 1.07949 1.26335 1.47977 1.26044 0.95464 1.02697 0.97714 0.85343 0.77734 0.78554 0.78604 1.18102 1.22691 1.20891 1.19312 0.95326 0.83543 1.42596 0.87952 1.44019 1.36905 1.06671 1.30225 1.21253 0.83931 0.90787 0.82055 1.90459 1.62438 1.44677 1.51029 1.22192 1.02098 0.93508 1.00644 1.22609 0.96717 0.99643 0.95815 1.22050 0.98623 0.84918 0.94012 0.90544 1.21779 0.95553 0.93602 0.94118 1.58605 1.09951 1.53368 1.15102 0.94421 0.87701 0.90167 0.90800 0.86068 0.94062 0.92414 0.84672 0.84882 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -57.85 11.28 21.66 0.24 -57.60 15 2 C -0.02 -1.05 4.77 84.93 0.41 -0.64 15 3 Si 0.97 48.08 29.59 68.60 2.03 50.11 15 4 H -0.26 -11.59 7.11 99.48 0.71 -10.88 15 5 H -0.30 -15.14 7.11 99.48 0.71 -14.43 15 6 H -0.28 -13.90 7.11 99.48 0.71 -13.19 15 7 C -0.28 -15.51 7.81 84.04 0.66 -14.86 15 8 H 0.10 5.31 6.74 -2.91 -0.02 5.29 15 9 N -0.46 -23.31 2.85 -609.73 -1.74 -25.05 15 10 C 0.43 23.54 7.31 87.90 0.64 24.18 15 11 O -0.60 -39.88 15.33 -3.05 -0.05 -39.93 15 12 C -0.14 -5.47 6.86 30.59 0.21 -5.26 15 13 C -0.11 -3.26 6.69 31.65 0.21 -3.05 15 14 C 0.11 3.90 3.60 45.44 0.16 4.06 15 15 H 0.08 2.43 8.14 -2.39 -0.02 2.42 15 16 C 0.08 2.64 6.33 86.30 0.55 3.18 15 17 N -0.84 -28.12 6.77 -186.73 -1.26 -29.38 15 18 H 0.25 15.88 8.31 -92.71 -0.77 15.11 15 19 H 0.10 3.39 8.14 -2.39 -0.02 3.37 15 20 H 0.08 2.99 8.14 -2.39 -0.02 2.97 15 21 H 0.07 2.19 7.84 -2.39 -0.02 2.17 15 22 H 0.12 2.42 8.14 -2.39 -0.02 2.40 15 23 H 0.04 1.58 8.04 -2.39 -0.02 1.56 15 24 H 0.06 1.39 8.14 -2.39 -0.02 1.37 15 25 H 0.34 10.04 8.78 -89.70 -0.79 9.25 15 26 H 0.34 9.61 9.08 -89.69 -0.81 8.79 15 Total: -1.00 -79.70 220.00 1.65 -78.04 By element: Atomic # 1 Polarization: 16.60 SS G_CDS: -0.41 Total: 16.20 kcal Atomic # 6 Polarization: 4.78 SS G_CDS: 2.84 Total: 7.62 kcal Atomic # 7 Polarization: -109.28 SS G_CDS: -2.76 Total: -112.04 kcal Atomic # 8 Polarization: -39.88 SS G_CDS: -0.05 Total: -39.93 kcal Atomic # 14 Polarization: 48.08 SS G_CDS: 2.03 Total: 50.11 kcal Total: -79.70 1.65 -78.04 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082631911.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.366 kcal (2) G-P(sol) polarization free energy of solvation -79.697 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.332 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.653 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.044 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.679 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds