Wall clock time and date at job start Mon Mar 30 2020 02:03:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 119.99672 * 2 1 4 4 H 1.48502 * 109.47297 * 269.99684 * 3 2 1 5 5 H 1.48496 * 109.47312 * 30.00184 * 3 2 1 6 6 H 1.48505 * 109.46817 * 149.99910 * 3 2 1 7 7 C 1.37881 * 120.00304 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99879 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99692 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.46940 * 180.02562 * 9 7 2 11 11 N 1.46497 * 109.47130 * 179.97438 * 10 9 7 12 12 C 1.47057 * 125.40952 * 90.00073 * 11 10 9 13 13 C 1.54105 * 103.99235 * 179.97438 * 12 11 10 14 14 N 1.47394 * 103.70056 * 0.10684 * 13 12 11 15 15 C 1.33947 * 109.21036 * 359.88525 * 14 13 12 16 16 O 1.21594 * 123.03846 * 180.09410 * 15 14 13 17 17 H 0.96994 * 120.00157 * 0.02562 * 1 2 3 18 18 H 1.09000 * 109.47336 * 59.99876 * 9 7 2 19 19 H 1.09002 * 109.47412 * 299.99886 * 9 7 2 20 20 H 1.09000 * 109.47340 * 59.99716 * 10 9 7 21 21 H 1.09001 * 109.47326 * 300.00286 * 10 9 7 22 22 H 1.09002 * 110.54831 * 298.59477 * 12 11 10 23 23 H 1.08997 * 110.54826 * 61.25951 * 12 11 10 24 24 H 1.08996 * 110.55034 * 118.66113 * 13 12 11 25 25 H 1.09001 * 110.54910 * 241.47819 * 13 12 11 26 26 H 0.97000 * 125.37712 * 179.97438 * 14 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4402 0.7001 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6620 -0.0005 11 7 1.5130 -4.9307 0.0001 12 6 1.0865 -5.6690 -1.1981 13 6 0.3700 -6.9116 -0.6348 14 7 0.4674 -6.7386 0.8257 15 6 1.1244 -5.6022 1.0921 16 8 1.3482 -5.2152 2.2229 17 1 -0.4850 0.8400 -0.0004 18 1 0.6241 -2.5567 -0.8903 19 1 0.6248 -2.5571 0.8897 20 1 2.8721 -3.6043 0.8894 21 1 2.8721 -3.6043 -0.8905 22 1 0.3985 -5.0683 -1.7929 23 1 1.9505 -5.9622 -1.7945 24 1 -0.6732 -6.9276 -0.9502 25 1 0.8798 -7.8225 -0.9489 26 1 0.1130 -7.3516 1.4887 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082719762.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:03:15 Heat of formation + Delta-G solvation = -50.502386 kcal Electronic energy + Delta-G solvation = -11100.882785 eV Core-core repulsion = 8985.622055 eV Total energy + Delta-G solvation = -2115.260730 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 184.095 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -41.81696 -37.37432 -36.25612 -34.55633 -31.54826 -29.59982 -26.92701 -23.82789 -23.51635 -20.99871 -18.79976 -18.38790 -17.31493 -16.93501 -16.46839 -15.36833 -15.18164 -14.69810 -14.48381 -14.31240 -13.67472 -13.15934 -12.93892 -12.79679 -12.51825 -11.93628 -11.81382 -11.44153 -11.24494 -10.58493 -10.29122 -9.34430 -8.22346 -6.35401 1.40592 1.43751 1.54689 1.74382 2.15738 2.41685 3.11307 3.16021 3.65585 4.08166 4.20277 4.60428 4.66309 4.68945 4.88835 5.02082 5.04320 5.37721 5.59727 5.64607 5.88303 6.15471 6.27577 6.66349 6.81100 7.34445 7.62922 8.90199 Molecular weight = 184.10amu Principal moments of inertia in cm(-1) A = 0.076158 B = 0.009174 C = 0.008952 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 367.568142 B = 3051.252348 C = 3126.968510 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.001 4.001 3 Si 0.973 3.027 4 H -0.265 1.265 5 H -0.285 1.285 6 H -0.263 1.263 7 C -0.545 4.545 8 H 0.069 0.931 9 C 0.021 3.979 10 C 0.166 3.834 11 N -0.636 5.636 12 C 0.080 3.920 13 C 0.100 3.900 14 N -0.736 5.736 15 C 0.679 3.321 16 O -0.651 6.651 17 H 0.264 0.736 18 H 0.001 0.999 19 H -0.030 1.030 20 H 0.053 0.947 21 H 0.098 0.902 22 H 0.079 0.921 23 H 0.108 0.892 24 H 0.102 0.898 25 H 0.119 0.881 26 H 0.435 0.565 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.680 -13.208 -6.078 14.636 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.199 4.199 3 Si 0.797 3.203 4 H -0.190 1.190 5 H -0.211 1.211 6 H -0.187 1.187 7 C -0.583 4.583 8 H 0.087 0.913 9 C -0.018 4.018 10 C 0.044 3.956 11 N -0.373 5.373 12 C -0.043 4.043 13 C -0.023 4.023 14 N -0.398 5.398 15 C 0.379 3.621 16 O -0.534 6.534 17 H 0.073 0.927 18 H 0.020 0.980 19 H -0.011 1.011 20 H 0.071 0.929 21 H 0.116 0.884 22 H 0.097 0.903 23 H 0.126 0.874 24 H 0.120 0.880 25 H 0.137 0.863 26 H 0.277 0.723 Dipole moment (debyes) X Y Z Total from point charges 1.738 -12.780 -5.585 14.055 hybrid contribution -0.216 0.798 0.519 0.976 sum 1.522 -11.982 -5.066 13.098 Atomic orbital electron populations 1.70125 1.08108 1.27935 1.51369 1.26058 0.95778 1.03730 0.94357 0.85324 0.78458 0.77705 0.78800 1.18959 1.21065 1.18693 1.21572 0.93883 0.91720 1.51127 0.91254 1.19264 0.94739 0.93318 0.94444 1.21228 0.93214 0.79266 1.01870 1.47491 1.59406 1.23639 1.06792 1.22739 1.00940 0.92373 0.88209 1.22689 1.03021 0.98453 0.78179 1.45126 1.60932 1.23703 1.10082 1.16406 0.79327 0.81965 0.84429 1.90876 1.65269 1.73488 1.23739 0.92709 0.98026 1.01114 0.92891 0.88411 0.90270 0.87368 0.87997 0.86296 0.72281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.73 13.29 21.45 0.28 -58.45 15 2 C 0.00 -0.08 5.46 84.66 0.46 0.38 15 3 Si 0.97 44.94 29.54 68.60 2.03 46.97 15 4 H -0.26 -11.49 7.11 99.48 0.71 -10.78 15 5 H -0.28 -13.00 7.11 99.48 0.71 -12.29 15 6 H -0.26 -11.62 7.11 99.48 0.71 -10.91 15 7 C -0.54 -31.79 9.11 25.60 0.23 -31.55 15 8 H 0.07 3.79 7.74 -2.91 -0.02 3.77 15 9 C 0.02 1.15 5.30 29.85 0.16 1.31 15 10 C 0.17 7.33 5.94 86.38 0.51 7.84 15 11 N -0.64 -24.10 2.96 -838.36 -2.48 -26.58 15 12 C 0.08 1.91 7.67 86.65 0.66 2.58 15 13 C 0.10 1.73 8.08 86.58 0.70 2.43 15 14 N -0.74 -19.76 6.39 -476.58 -3.04 -22.80 15 15 C 0.68 27.50 8.60 179.57 1.55 29.05 15 16 O -0.65 -33.71 17.53 -4.01 -0.07 -33.78 15 17 H 0.26 15.50 8.31 -92.71 -0.77 14.73 15 18 H 0.00 0.08 8.14 -2.39 -0.02 0.06 15 19 H -0.03 -1.93 8.14 -2.39 -0.02 -1.95 15 20 H 0.05 2.52 7.91 -2.39 -0.02 2.50 15 21 H 0.10 3.68 8.14 -2.39 -0.02 3.66 15 22 H 0.08 1.94 8.14 -2.39 -0.02 1.92 15 23 H 0.11 1.93 8.14 -2.39 -0.02 1.91 15 24 H 0.10 1.35 8.14 -2.39 -0.02 1.33 15 25 H 0.12 1.16 8.14 -2.39 -0.02 1.14 15 26 H 0.43 9.55 8.96 -92.71 -0.83 8.72 15 Total: -1.00 -80.16 231.10 1.34 -78.83 By element: Atomic # 1 Polarization: 3.45 SS G_CDS: 0.34 Total: 3.79 kcal Atomic # 6 Polarization: 7.75 SS G_CDS: 4.28 Total: 12.03 kcal Atomic # 7 Polarization: -102.59 SS G_CDS: -5.24 Total: -107.83 kcal Atomic # 8 Polarization: -33.71 SS G_CDS: -0.07 Total: -33.78 kcal Atomic # 14 Polarization: 44.94 SS G_CDS: 2.03 Total: 46.97 kcal Total: -80.16 1.34 -78.83 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082719762.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.323 kcal (2) G-P(sol) polarization free energy of solvation -80.163 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.840 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.338 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.826 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.502 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds