Wall clock time and date at job start Mon Mar 30 2020 02:18:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86797 * 120.00530 * 2 1 4 4 H 1.48504 * 109.47061 * 270.00261 * 3 2 1 5 5 H 1.48497 * 109.46906 * 29.99434 * 3 2 1 6 6 H 1.48498 * 109.47403 * 149.99880 * 3 2 1 7 7 C 1.37880 * 119.99594 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00010 * 359.97438 * 7 2 1 9 9 C 1.50701 * 119.99861 * 180.02562 * 7 2 1 10 10 C 1.52997 * 109.47212 * 179.97438 * 9 7 2 11 11 C 1.52992 * 109.47482 * 179.97438 * 10 9 7 12 12 C 1.52997 * 109.47482 * 179.97438 * 11 10 9 13 13 H 1.09000 * 109.82301 * 305.56732 * 12 11 10 14 14 C 1.54387 * 109.83470 * 184.58979 * 12 11 10 15 15 C 1.55299 * 102.25429 * 219.12997 * 14 12 11 16 16 C 1.54946 * 100.94339 * 34.13145 * 15 14 12 17 17 O 1.43231 * 109.83298 * 66.45482 * 12 11 10 18 18 H 0.97002 * 119.99739 * 0.02562 * 1 2 3 19 19 H 1.09002 * 109.47060 * 299.99817 * 9 7 2 20 20 H 1.09001 * 109.47380 * 59.99905 * 9 7 2 21 21 H 1.09002 * 109.47153 * 299.99998 * 10 9 7 22 22 H 1.08998 * 109.47533 * 59.99628 * 10 9 7 23 23 H 1.09002 * 109.47103 * 300.00247 * 11 10 9 24 24 H 1.09001 * 109.47066 * 60.00169 * 11 10 9 25 25 H 1.09008 * 110.84299 * 337.31917 * 14 12 11 26 26 H 1.09000 * 110.85010 * 100.93612 * 14 12 11 27 27 H 1.08995 * 111.13042 * 276.21193 * 15 14 12 28 28 H 1.09000 * 111.16430 * 152.06326 * 15 14 12 29 29 H 1.08996 * 110.31471 * 204.64102 * 16 15 14 30 30 H 1.09005 * 110.31256 * 82.46963 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6526 0.6999 6 1 3.5468 1.4400 0.7000 7 6 2.0044 -1.1941 -0.0005 8 1 1.4644 -2.1294 -0.0005 9 6 3.5114 -1.1942 0.0000 10 6 4.0214 -2.6367 -0.0001 11 6 5.5513 -2.6368 -0.0001 12 6 6.0613 -4.0793 0.0004 13 1 5.6222 -4.6263 0.8347 14 6 7.6007 -4.0907 0.1166 15 6 7.9953 -5.2447 -0.8448 16 6 6.9074 -5.1012 -1.9388 17 8 5.7157 -4.7173 -1.2345 18 1 -0.4850 0.8401 -0.0004 19 1 3.8751 -0.6798 -0.8895 20 1 3.8745 -0.6810 0.8905 21 1 3.6577 -3.1507 0.8897 22 1 3.6584 -3.1504 -0.8902 23 1 5.9147 -2.1229 -0.8901 24 1 5.9147 -2.1231 0.8899 25 1 8.0221 -3.1436 -0.2207 26 1 7.9111 -4.3130 1.1375 27 1 7.9264 -6.2118 -0.3469 28 1 8.9915 -5.0888 -1.2588 29 1 6.7557 -6.0525 -2.4487 30 1 7.1897 -4.3285 -2.6540 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000083530242.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:18:38 Heat of formation + Delta-G solvation = -73.239578 kcal Electronic energy + Delta-G solvation = -11119.779640 eV Core-core repulsion = 9107.073295 eV Total energy + Delta-G solvation = -2012.706345 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.120 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -39.35285 -34.54100 -32.32718 -31.98859 -29.76386 -26.56121 -23.34336 -21.72224 -20.60700 -19.81253 -16.85253 -16.56598 -15.86405 -14.46689 -14.17644 -13.90438 -13.35474 -12.98001 -12.74298 -12.07378 -11.74262 -11.55982 -11.19953 -11.16601 -10.89338 -10.72838 -10.60876 -9.84929 -9.57462 -9.49781 -9.15810 -9.02527 -8.45972 -5.96487 -3.93298 3.35691 3.42225 3.46839 3.97584 4.51097 4.52085 4.79279 4.91587 5.22207 5.27267 5.37614 5.57991 5.65261 5.68682 5.75930 5.80444 5.94991 6.06480 6.29522 6.46614 6.75036 6.84432 7.07722 7.25581 7.46342 7.58519 7.89453 8.64593 9.10019 9.66678 11.17365 Molecular weight = 184.12amu Principal moments of inertia in cm(-1) A = 0.079752 B = 0.007791 C = 0.007453 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 351.002037 B = 3593.246873 C = 3756.063212 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C 0.063 3.937 3 Si 0.881 3.119 4 H -0.278 1.278 5 H -0.289 1.289 6 H -0.266 1.266 7 C -0.517 4.517 8 H 0.071 0.929 9 C -0.015 4.015 10 C -0.099 4.099 11 C -0.131 4.131 12 C 0.080 3.920 13 H 0.078 0.922 14 C -0.153 4.153 15 C -0.157 4.157 16 C 0.049 3.951 17 O -0.373 6.373 18 H 0.262 0.738 19 H 0.009 0.991 20 H 0.013 0.987 21 H 0.050 0.950 22 H 0.059 0.941 23 H 0.060 0.940 24 H 0.065 0.935 25 H 0.077 0.923 26 H 0.078 0.922 27 H 0.075 0.925 28 H 0.078 0.922 29 H 0.080 0.920 30 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.489 -7.680 -0.772 18.206 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.137 4.137 3 Si 0.709 3.291 4 H -0.204 1.204 5 H -0.215 1.215 6 H -0.191 1.191 7 C -0.555 4.555 8 H 0.089 0.911 9 C -0.053 4.053 10 C -0.137 4.137 11 C -0.168 4.168 12 C 0.023 3.977 13 H 0.096 0.904 14 C -0.190 4.190 15 C -0.195 4.195 16 C -0.028 4.028 17 O -0.292 6.292 18 H 0.071 0.929 19 H 0.027 0.973 20 H 0.031 0.969 21 H 0.069 0.931 22 H 0.078 0.922 23 H 0.079 0.921 24 H 0.083 0.917 25 H 0.095 0.905 26 H 0.097 0.903 27 H 0.094 0.906 28 H 0.097 0.903 29 H 0.098 0.902 30 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 16.122 -7.590 -0.837 17.839 hybrid contribution 0.582 0.992 0.047 1.151 sum 16.704 -6.598 -0.790 17.977 Atomic orbital electron populations 1.69928 1.06291 1.26720 1.51679 1.25056 0.94737 0.99162 0.94759 0.86757 0.80328 0.83635 0.78424 1.20381 1.21469 1.19076 1.21218 0.89752 0.94416 1.50112 0.91070 1.19595 0.96999 0.92758 0.95899 1.21392 0.91561 0.99364 1.01343 1.22075 0.98986 0.94129 1.01635 1.22867 0.93206 0.94615 0.87060 0.90417 1.23219 0.96178 0.99159 1.00481 1.23258 0.99607 0.99361 0.97280 1.23334 0.85013 0.99792 0.94661 1.88504 1.28970 1.78229 1.33498 0.92869 0.97265 0.96914 0.93113 0.92215 0.92144 0.91667 0.90460 0.90305 0.90620 0.90341 0.90159 0.92513 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.97 13.96 55.43 0.77 -28.19 16 2 C 0.06 1.92 5.47 -17.82 -0.10 1.83 16 3 Si 0.88 22.54 27.47 -169.99 -4.67 17.87 16 4 H -0.28 -6.98 7.11 56.52 0.40 -6.57 16 5 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 6 H -0.27 -6.53 6.54 56.52 0.37 -6.16 16 7 C -0.52 -15.55 9.66 -34.44 -0.33 -15.88 16 8 H 0.07 2.30 7.99 -52.49 -0.42 1.88 16 9 C -0.02 -0.38 4.04 -27.88 -0.11 -0.50 16 10 C -0.10 -2.13 5.06 -26.74 -0.14 -2.26 16 11 C -0.13 -2.23 4.78 -26.74 -0.13 -2.35 16 12 C 0.08 1.17 3.52 -26.01 -0.09 1.08 16 13 H 0.08 1.13 8.14 -51.93 -0.42 0.70 16 14 C -0.15 -1.69 6.54 -24.79 -0.16 -1.85 16 15 C -0.16 -1.53 7.16 -24.48 -0.18 -1.70 16 16 C 0.05 0.58 7.78 38.18 0.30 0.88 16 17 O -0.37 -6.05 10.63 -35.23 -0.37 -6.43 16 18 H 0.26 7.79 8.31 -40.82 -0.34 7.45 16 19 H 0.01 0.23 7.57 -51.93 -0.39 -0.16 16 20 H 0.01 0.32 7.20 -51.93 -0.37 -0.06 16 21 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 22 H 0.06 1.35 7.88 -51.93 -0.41 0.94 16 23 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 24 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 25 H 0.08 0.83 7.85 -51.92 -0.41 0.42 16 26 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 27 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.08 0.83 8.14 -51.93 -0.42 0.40 16 30 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 LS Contribution 246.91 15.07 3.72 3.72 Total: -1.00 -32.46 246.91 -6.46 -38.93 By element: Atomic # 1 Polarization: -0.15 SS G_CDS: -4.97 Total: -5.13 kcal Atomic # 6 Polarization: -19.83 SS G_CDS: -0.94 Total: -20.77 kcal Atomic # 7 Polarization: -28.97 SS G_CDS: 0.77 Total: -28.19 kcal Atomic # 8 Polarization: -6.05 SS G_CDS: -0.37 Total: -6.43 kcal Atomic # 14 Polarization: 22.54 SS G_CDS: -4.67 Total: 17.87 kcal Total LS contribution 3.72 Total: 3.72 kcal Total: -32.46 -6.46 -38.93 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083530242.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.314 kcal (2) G-P(sol) polarization free energy of solvation -32.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.778 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.462 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.926 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.240 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds