Wall clock time and date at job start Mon Mar 30 2020 01:56:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86800 * 120.00074 * 2 1 4 4 H 1.48499 * 109.47293 * 269.99846 * 3 2 1 5 5 H 1.48504 * 109.47104 * 30.00092 * 3 2 1 6 6 H 1.48495 * 109.47249 * 149.99839 * 3 2 1 7 7 C 1.37870 * 119.99883 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00310 * 179.97438 * 7 2 1 9 9 C 1.50706 * 120.00176 * 0.02562 * 7 2 1 10 10 N 1.46496 * 109.47106 * 180.02562 * 9 7 2 11 11 C 1.34776 * 120.00006 * 179.97438 * 10 9 7 12 12 O 1.21285 * 119.99667 * 0.02562 * 11 10 9 13 13 C 1.50695 * 120.00245 * 179.97438 * 11 10 9 14 14 N 1.46905 * 115.55063 * 9.33749 * 13 11 10 15 15 C 1.52997 * 117.50280 * 223.62622 * 13 11 10 16 16 C 1.53000 * 60.00269 * 252.51267 * 15 13 11 17 17 H 0.97004 * 119.99507 * 359.97438 * 1 2 3 18 18 H 1.09001 * 109.46953 * 299.99770 * 9 7 2 19 19 H 1.09000 * 109.47318 * 59.99368 * 9 7 2 20 20 H 0.96998 * 120.00192 * 0.02562 * 10 9 7 21 21 H 1.00896 * 110.99728 * 325.57793 * 14 13 11 22 22 H 1.00898 * 110.99761 * 89.52961 * 14 13 11 23 23 H 1.09005 * 117.49841 * 359.97438 * 15 13 11 24 24 H 1.09004 * 117.50554 * 145.02181 * 15 13 11 25 25 H 1.09003 * 117.49647 * 252.51021 * 16 15 13 26 26 H 1.08999 * 117.51777 * 107.48170 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0464 -1.4000 5 1 1.4467 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0017 10 7 2.2030 -3.6126 -0.0015 11 6 1.7538 -4.8833 -0.0019 12 8 0.5613 -5.1049 -0.0029 13 6 2.7330 -6.0288 -0.0022 14 7 4.1388 -5.6606 0.2130 15 6 2.4454 -7.2038 -0.9389 16 6 2.2571 -7.3652 0.5709 17 1 -0.4849 0.8401 0.0004 18 1 0.6240 -2.5575 0.8880 19 1 0.6246 -2.5563 -0.8919 20 1 3.1566 -3.4354 -0.0003 21 1 4.3462 -4.7660 -0.2049 22 1 4.3666 -5.6621 1.1959 23 1 1.5477 -7.1486 -1.5546 24 1 3.2994 -7.7039 -1.3959 25 1 2.9872 -7.9714 1.1072 26 1 1.2358 -7.4159 0.9484 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000083834094.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:33 Heat of formation + Delta-G solvation = -44.666045 kcal Electronic energy + Delta-G solvation = -10949.024984 eV Core-core repulsion = 8834.017337 eV Total energy + Delta-G solvation = -2115.007647 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 184.095 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -41.09642 -37.73718 -36.32398 -34.51721 -32.05438 -29.47636 -25.67176 -23.50349 -23.44433 -20.87569 -19.12551 -18.01808 -17.27455 -16.58354 -16.25179 -15.92030 -15.58750 -15.07292 -14.21183 -14.03724 -13.82182 -12.98999 -12.75074 -12.42085 -12.28523 -11.94422 -11.78621 -11.55310 -11.05515 -10.85659 -9.97959 -9.75413 -8.33689 -6.51651 1.41596 1.43142 1.45092 1.55436 2.21234 2.42812 2.89223 3.01578 3.13870 3.77221 3.93916 4.06164 4.65762 4.71221 4.93615 5.01500 5.14160 5.23708 5.37686 5.52699 5.76820 5.89641 6.33406 6.58109 6.76918 7.16241 7.32377 8.78580 Molecular weight = 184.10amu Principal moments of inertia in cm(-1) A = 0.078980 B = 0.008960 C = 0.008263 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 354.436431 B = 3124.419273 C = 3387.759471 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.005 3.995 3 Si 0.988 3.012 4 H -0.270 1.270 5 H -0.283 1.283 6 H -0.254 1.254 7 C -0.560 4.560 8 H 0.085 0.915 9 C 0.266 3.734 10 N -0.705 5.705 11 C 0.502 3.498 12 O -0.599 6.599 13 C -0.006 4.006 14 N -0.789 5.789 15 C -0.124 4.124 16 C -0.128 4.128 17 H 0.270 0.730 18 H -0.012 1.012 19 H -0.012 1.012 20 H 0.404 0.596 21 H 0.350 0.650 22 H 0.358 0.642 23 H 0.086 0.914 24 H 0.133 0.867 25 H 0.137 0.863 26 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.009 -9.192 0.695 13.607 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.195 4.195 3 Si 0.811 3.189 4 H -0.195 1.195 5 H -0.209 1.209 6 H -0.178 1.178 7 C -0.597 4.597 8 H 0.103 0.897 9 C 0.143 3.857 10 N -0.355 5.355 11 C 0.288 3.712 12 O -0.480 6.480 13 C -0.104 4.104 14 N -0.322 5.322 15 C -0.162 4.162 16 C -0.166 4.166 17 H 0.079 0.921 18 H 0.006 0.994 19 H 0.005 0.995 20 H 0.240 0.760 21 H 0.165 0.835 22 H 0.173 0.827 23 H 0.104 0.896 24 H 0.151 0.849 25 H 0.155 0.845 26 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 9.199 -9.841 0.286 13.475 hybrid contribution -0.322 1.967 0.473 2.048 sum 8.877 -7.875 0.759 11.891 Atomic orbital electron populations 1.70142 1.08360 1.28726 1.49677 1.26096 0.95793 1.04017 0.93607 0.85108 0.78474 0.76672 0.78672 1.19527 1.20895 1.17781 1.21591 0.94310 0.90429 1.53388 0.89729 1.18590 0.88659 0.84284 0.94143 1.46147 1.11119 1.05591 1.72607 1.21208 0.89407 0.85006 0.75577 1.90626 1.18961 1.85473 1.52981 1.21330 0.87987 0.88515 1.12539 1.58618 1.14179 1.37979 1.21416 1.23200 1.03576 0.96187 0.93241 1.23200 1.02896 0.93398 0.97071 0.92125 0.99395 0.99452 0.75968 0.83525 0.82723 0.89554 0.84891 0.84507 0.89156 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.28 13.29 21.45 0.28 -56.00 15 2 C 0.00 0.26 5.46 84.65 0.46 0.72 15 3 Si 0.99 42.06 29.54 68.60 2.03 44.09 15 4 H -0.27 -11.10 7.11 99.48 0.71 -10.40 15 5 H -0.28 -11.96 7.11 99.48 0.71 -11.25 15 6 H -0.25 -10.01 7.11 99.48 0.71 -9.30 15 7 C -0.56 -30.54 9.28 25.60 0.24 -30.31 15 8 H 0.08 4.14 7.60 -2.91 -0.02 4.12 15 9 C 0.27 14.85 5.43 85.64 0.46 15.32 15 10 N -0.70 -30.57 5.51 -466.79 -2.57 -33.14 15 11 C 0.50 21.08 7.57 87.66 0.66 21.74 15 12 O -0.60 -30.70 16.43 -3.05 -0.05 -30.75 15 13 C -0.01 -0.19 3.15 2.78 0.01 -0.18 15 14 N -0.79 -17.87 9.64 -154.52 -1.49 -19.36 15 15 C -0.12 -3.13 10.07 30.59 0.31 -2.82 15 16 C -0.13 -3.13 9.98 30.60 0.31 -2.82 15 17 H 0.27 15.19 8.31 -92.71 -0.77 14.42 15 18 H -0.01 -0.75 8.14 -2.39 -0.02 -0.77 15 19 H -0.01 -0.79 8.14 -2.39 -0.02 -0.80 15 20 H 0.40 14.39 6.32 -92.71 -0.59 13.80 15 21 H 0.35 7.86 7.06 -89.70 -0.63 7.23 15 22 H 0.36 6.83 9.08 -89.70 -0.81 6.01 15 23 H 0.09 2.45 8.14 -2.38 -0.02 2.43 15 24 H 0.13 2.65 8.14 -2.38 -0.02 2.63 15 25 H 0.14 2.44 8.14 -2.39 -0.02 2.42 15 26 H 0.09 2.53 7.89 -2.39 -0.02 2.51 15 Total: -1.00 -70.28 233.63 -0.17 -70.45 By element: Atomic # 1 Polarization: 23.88 SS G_CDS: -0.82 Total: 23.05 kcal Atomic # 6 Polarization: -0.79 SS G_CDS: 2.45 Total: 1.66 kcal Atomic # 7 Polarization: -104.72 SS G_CDS: -3.78 Total: -108.50 kcal Atomic # 8 Polarization: -30.70 SS G_CDS: -0.05 Total: -30.75 kcal Atomic # 14 Polarization: 42.06 SS G_CDS: 2.03 Total: 44.09 kcal Total: -70.28 -0.17 -70.45 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083834094.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.788 kcal (2) G-P(sol) polarization free energy of solvation -70.282 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.494 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.172 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.454 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.666 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds