Wall clock time and date at job start Mon Mar 30 2020 02:18:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 119.99772 * 2 1 4 4 H 1.48504 * 109.47209 * 270.00481 * 3 2 1 5 5 H 1.48501 * 109.47358 * 29.99973 * 3 2 1 6 6 H 1.48496 * 109.47341 * 150.00585 * 3 2 1 7 7 C 1.37871 * 120.00482 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00483 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99694 * 359.71466 * 7 2 1 10 10 H 1.08998 * 108.85619 * 300.27779 * 9 7 2 11 11 C 1.54067 * 108.87697 * 58.84117 * 9 7 2 12 12 C 1.54000 * 112.85763 * 162.58804 * 11 9 7 13 13 C 1.50472 * 112.54631 * 41.56038 * 12 11 9 14 14 C 1.54250 * 108.52870 * 265.93036 * 13 12 11 15 15 C 1.45545 * 112.39963 * 79.97559 * 14 13 12 16 16 C 1.50472 * 108.87683 * 181.71698 * 9 7 2 17 17 H 1.08993 * 109.63380 * 264.77669 * 16 9 7 18 18 O 1.42903 * 109.63100 * 25.36688 * 16 9 7 19 19 H 0.96995 * 120.00207 * 359.97438 * 1 2 3 20 20 H 1.09004 * 108.81183 * 283.35274 * 11 9 7 21 21 H 1.09009 * 108.81292 * 41.62865 * 11 9 7 22 22 H 1.08997 * 108.79273 * 280.80541 * 12 11 9 23 23 H 1.09000 * 108.91148 * 162.38943 * 12 11 9 24 24 H 1.08997 * 109.62685 * 146.22116 * 13 12 11 25 25 H 1.09001 * 109.62865 * 25.64321 * 13 12 11 26 26 H 1.09000 * 108.88992 * 319.22814 * 14 13 12 27 27 H 1.08995 * 108.89431 * 200.73222 * 14 13 12 28 28 H 1.08996 * 108.89036 * 177.30592 * 15 14 13 29 29 H 1.08999 * 108.81561 * 58.76798 * 15 14 13 30 30 H 0.96698 * 114.00320 * 180.02562 * 18 16 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0466 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4403 0.6999 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2511 -2.4991 0.0054 10 1 0.6285 -2.5423 0.8989 11 6 0.3433 -2.5562 -1.2381 12 6 -0.1381 -3.9826 -1.5623 13 6 -0.5306 -4.7529 -0.3308 14 6 0.6853 -5.5768 0.1404 15 6 1.6412 -4.7754 0.8904 16 6 2.2404 -3.6321 0.0461 17 1 2.4329 -3.9868 -0.9664 18 8 3.4596 -3.1838 0.6417 19 1 -0.4850 0.8400 0.0004 20 1 -0.5277 -1.9235 -1.0668 21 1 0.8948 -2.1671 -2.0941 22 1 0.6641 -4.5167 -2.0716 23 1 -0.9979 -3.9222 -2.2295 24 1 -1.3577 -5.4228 -0.5661 25 1 -0.8297 -4.0593 0.4551 26 1 1.1853 -5.9983 -0.7316 27 1 0.3353 -6.3925 0.7730 28 1 2.4492 -5.4207 1.2350 29 1 1.1377 -4.3475 1.7573 30 1 4.1431 -3.8654 0.6993 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084233609.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:18:09 Heat of formation + Delta-G solvation = -71.318541 kcal Electronic energy + Delta-G solvation = -11986.361498 eV Core-core repulsion = 9973.738456 eV Total energy + Delta-G solvation = -2012.623043 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.120 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -38.45832 -34.93439 -33.19257 -30.88532 -29.68267 -25.40819 -23.44102 -22.27608 -19.96992 -18.22256 -16.79211 -15.68327 -14.86213 -14.11432 -13.73025 -13.48358 -13.26774 -12.58001 -12.32527 -11.55109 -11.19298 -11.02830 -10.90643 -10.64305 -10.36742 -10.13849 -9.88377 -9.60720 -9.42115 -9.02673 -8.89686 -8.42477 -8.14090 -5.83445 -3.83169 3.40654 3.46674 3.52954 4.58641 5.19509 5.25790 5.42832 5.51410 5.68552 5.97391 6.06079 6.08588 6.22537 6.38668 6.47151 6.49075 6.67437 6.84231 6.86234 6.98228 7.14307 7.26940 7.47937 7.91572 8.05184 8.24364 8.52929 8.79602 9.24890 9.79928 11.24473 Molecular weight = 184.12amu Principal moments of inertia in cm(-1) A = 0.050950 B = 0.014745 C = 0.012329 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 549.428906 B = 1898.430468 C = 2270.438768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.053 3.947 3 Si 0.890 3.110 4 H -0.284 1.284 5 H -0.290 1.290 6 H -0.275 1.275 7 C -0.491 4.491 8 H 0.070 0.930 9 C 0.050 3.950 10 H 0.028 0.972 11 C -0.100 4.100 12 C -0.123 4.123 13 C -0.116 4.116 14 C -0.108 4.108 15 C -0.149 4.149 16 C 0.119 3.881 17 H 0.036 0.964 18 O -0.543 6.543 19 H 0.256 0.744 20 H 0.083 0.917 21 H 0.039 0.961 22 H 0.042 0.958 23 H 0.041 0.959 24 H 0.048 0.952 25 H 0.071 0.929 26 H 0.052 0.948 27 H 0.048 0.952 28 H 0.046 0.954 29 H 0.064 0.936 30 H 0.344 0.656 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.084 -8.759 -0.855 8.867 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.147 4.147 3 Si 0.718 3.282 4 H -0.210 1.210 5 H -0.216 1.216 6 H -0.200 1.200 7 C -0.530 4.530 8 H 0.088 0.912 9 C 0.031 3.969 10 H 0.046 0.954 11 C -0.138 4.138 12 C -0.161 4.161 13 C -0.153 4.153 14 C -0.146 4.146 15 C -0.187 4.187 16 C 0.061 3.939 17 H 0.054 0.946 18 O -0.345 6.345 19 H 0.066 0.934 20 H 0.101 0.899 21 H 0.058 0.942 22 H 0.061 0.939 23 H 0.060 0.940 24 H 0.067 0.933 25 H 0.089 0.911 26 H 0.070 0.930 27 H 0.067 0.933 28 H 0.065 0.935 29 H 0.082 0.918 30 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges 0.588 -8.054 -0.812 8.116 hybrid contribution 0.665 0.352 -0.049 0.754 sum 1.253 -7.702 -0.861 7.851 Atomic orbital electron populations 1.69925 1.05806 1.25979 1.52338 1.25004 0.94812 0.98989 0.95855 0.86626 0.79974 0.83752 0.77804 1.21027 1.21576 1.19999 1.21261 0.93885 0.89777 1.48064 0.91151 1.18509 0.91487 0.92111 0.94765 0.95360 1.21957 1.01330 0.92184 0.98367 1.21506 0.99219 0.98835 0.96547 1.21328 0.96331 0.98299 0.99344 1.20373 0.96702 0.97872 0.99609 1.21256 0.98766 0.98249 1.00460 1.21639 0.85398 0.94448 0.92461 0.94559 1.86922 1.24124 1.39084 1.84334 0.93430 0.89872 0.94221 0.93886 0.94004 0.93320 0.91052 0.92961 0.93306 0.93546 0.91754 0.81304 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.53 11.43 55.43 0.63 -25.89 16 2 C 0.05 1.52 5.29 -17.82 -0.09 1.43 16 3 Si 0.89 22.41 29.54 -169.99 -5.02 17.39 16 4 H -0.28 -7.05 7.11 56.52 0.40 -6.65 16 5 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 6 H -0.28 -6.92 7.11 56.52 0.40 -6.51 16 7 C -0.49 -14.15 7.95 -34.44 -0.27 -14.43 16 8 H 0.07 2.08 6.41 -52.49 -0.34 1.74 16 9 C 0.05 1.26 1.59 -92.48 -0.15 1.12 16 10 H 0.03 0.79 6.62 -51.93 -0.34 0.44 16 11 C -0.10 -2.39 4.66 -25.65 -0.12 -2.51 16 12 C -0.12 -2.35 5.31 -27.47 -0.15 -2.49 16 13 C -0.12 -2.01 5.61 -27.34 -0.15 -2.16 16 14 C -0.11 -1.72 5.26 -29.59 -0.16 -1.87 16 15 C -0.15 -2.67 4.93 -29.60 -0.15 -2.81 16 16 C 0.12 2.54 2.96 -27.34 -0.08 2.46 16 17 H 0.04 0.75 6.97 -51.93 -0.36 0.39 16 18 O -0.54 -11.75 11.18 -35.23 -0.39 -12.15 16 19 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 20 H 0.08 2.20 6.56 -51.93 -0.34 1.86 16 21 H 0.04 0.98 7.97 -51.92 -0.41 0.57 16 22 H 0.04 0.77 6.63 -51.93 -0.34 0.42 16 23 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 24 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 25 H 0.07 1.39 6.97 -51.93 -0.36 1.02 16 26 H 0.05 0.78 7.47 -51.93 -0.39 0.40 16 27 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.05 0.72 8.08 -51.93 -0.42 0.30 16 29 H 0.06 1.24 7.46 -51.93 -0.39 0.86 16 30 H 0.34 5.45 9.05 45.56 0.41 5.86 16 LS Contribution 229.97 15.07 3.47 3.47 Total: -1.00 -30.49 229.97 -6.32 -36.81 By element: Atomic # 1 Polarization: 5.34 SS G_CDS: -3.69 Total: 1.65 kcal Atomic # 6 Polarization: -19.96 SS G_CDS: -1.32 Total: -21.27 kcal Atomic # 7 Polarization: -26.53 SS G_CDS: 0.63 Total: -25.89 kcal Atomic # 8 Polarization: -11.75 SS G_CDS: -0.39 Total: -12.15 kcal Atomic # 14 Polarization: 22.41 SS G_CDS: -5.02 Total: 17.39 kcal Total LS contribution 3.47 Total: 3.47 kcal Total: -30.49 -6.32 -36.81 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084233609.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.511 kcal (2) G-P(sol) polarization free energy of solvation -30.486 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.997 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.322 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.808 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.319 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds