Wall clock time and date at job start Mon Mar 30 2020 02:18:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 119.99772 * 2 1 4 4 H 1.48504 * 109.47209 * 270.00481 * 3 2 1 5 5 H 1.48501 * 109.47358 * 29.99973 * 3 2 1 6 6 H 1.48496 * 109.47341 * 150.00585 * 3 2 1 7 7 C 1.37871 * 120.00482 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00483 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99694 * 359.71466 * 7 2 1 10 10 H 1.08998 * 108.85619 * 300.27779 * 9 7 2 11 11 C 1.54067 * 108.87697 * 58.84117 * 9 7 2 12 12 C 1.54000 * 112.85763 * 162.58804 * 11 9 7 13 13 C 1.50472 * 112.54631 * 41.56038 * 12 11 9 14 14 C 1.54250 * 108.52870 * 265.93036 * 13 12 11 15 15 C 1.45545 * 112.39963 * 79.97559 * 14 13 12 16 16 C 1.50472 * 108.87683 * 181.71698 * 9 7 2 17 17 H 1.08993 * 109.63380 * 264.77669 * 16 9 7 18 18 O 1.42903 * 109.63100 * 25.36688 * 16 9 7 19 19 H 0.96995 * 120.00207 * 359.97438 * 1 2 3 20 20 H 1.09004 * 108.81183 * 283.35274 * 11 9 7 21 21 H 1.09009 * 108.81292 * 41.62865 * 11 9 7 22 22 H 1.08997 * 108.79273 * 280.80541 * 12 11 9 23 23 H 1.09000 * 108.91148 * 162.38943 * 12 11 9 24 24 H 1.08997 * 109.62685 * 146.22116 * 13 12 11 25 25 H 1.09001 * 109.62865 * 25.64321 * 13 12 11 26 26 H 1.09000 * 108.88992 * 319.22814 * 14 13 12 27 27 H 1.08995 * 108.89431 * 200.73222 * 14 13 12 28 28 H 1.08996 * 108.89036 * 177.30592 * 15 14 13 29 29 H 1.08999 * 108.81561 * 58.76798 * 15 14 13 30 30 H 0.96698 * 114.00320 * 180.02562 * 18 16 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0466 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4403 0.6999 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2511 -2.4991 0.0054 10 1 0.6285 -2.5423 0.8989 11 6 0.3433 -2.5562 -1.2381 12 6 -0.1381 -3.9826 -1.5623 13 6 -0.5306 -4.7529 -0.3308 14 6 0.6853 -5.5768 0.1404 15 6 1.6412 -4.7754 0.8904 16 6 2.2404 -3.6321 0.0461 17 1 2.4329 -3.9868 -0.9664 18 8 3.4596 -3.1838 0.6417 19 1 -0.4850 0.8400 0.0004 20 1 -0.5277 -1.9235 -1.0668 21 1 0.8948 -2.1671 -2.0941 22 1 0.6641 -4.5167 -2.0716 23 1 -0.9979 -3.9222 -2.2295 24 1 -1.3577 -5.4228 -0.5661 25 1 -0.8297 -4.0593 0.4551 26 1 1.1853 -5.9983 -0.7316 27 1 0.3353 -6.3925 0.7730 28 1 2.4492 -5.4207 1.2350 29 1 1.1377 -4.3475 1.7573 30 1 4.1431 -3.8654 0.6993 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084233609.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:18:09 Heat of formation + Delta-G solvation = -92.263670 kcal Electronic energy + Delta-G solvation = -11987.269747 eV Core-core repulsion = 9973.738456 eV Total energy + Delta-G solvation = -2013.531292 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.120 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -40.07644 -36.53476 -35.19571 -32.60825 -31.46603 -27.36623 -25.12049 -24.05446 -21.42398 -20.04302 -18.61306 -17.60323 -16.79657 -15.80734 -15.35034 -15.04300 -14.86737 -14.27316 -14.06012 -13.26058 -12.95438 -12.92349 -12.81692 -12.40212 -12.20447 -11.76483 -11.43230 -11.29476 -11.17487 -10.81097 -10.75729 -10.37434 -10.18457 -8.03416 -6.10846 1.38939 1.39619 1.51272 2.46997 3.21860 3.77866 3.88998 4.02096 4.27563 4.45325 4.50083 4.64367 4.68748 4.89657 4.92793 5.05594 5.22484 5.32953 5.42144 5.44980 5.49420 5.55544 5.65209 5.81040 6.03890 6.15771 6.49246 6.99624 7.28026 7.59277 9.02373 Molecular weight = 184.12amu Principal moments of inertia in cm(-1) A = 0.050950 B = 0.014745 C = 0.012329 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 549.428906 B = 1898.430468 C = 2270.438768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C 0.002 3.998 3 Si 0.950 3.050 4 H -0.276 1.276 5 H -0.284 1.284 6 H -0.274 1.274 7 C -0.513 4.513 8 H 0.059 0.941 9 C 0.048 3.952 10 H -0.007 1.007 11 C -0.091 4.091 12 C -0.116 4.116 13 C -0.116 4.116 14 C -0.107 4.107 15 C -0.140 4.140 16 C 0.119 3.881 17 H 0.047 0.953 18 O -0.570 6.570 19 H 0.256 0.744 20 H 0.047 0.953 21 H 0.018 0.982 22 H 0.061 0.939 23 H 0.054 0.946 24 H 0.079 0.921 25 H 0.039 0.961 26 H 0.072 0.928 27 H 0.077 0.923 28 H 0.078 0.922 29 H 0.040 0.960 30 H 0.371 0.629 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.695 -10.387 -1.220 10.595 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.195 4.195 3 Si 0.777 3.223 4 H -0.201 1.201 5 H -0.210 1.210 6 H -0.198 1.198 7 C -0.552 4.552 8 H 0.077 0.923 9 C 0.030 3.970 10 H 0.011 0.989 11 C -0.130 4.130 12 C -0.153 4.153 13 C -0.154 4.154 14 C -0.144 4.144 15 C -0.177 4.177 16 C 0.061 3.939 17 H 0.064 0.936 18 O -0.376 6.376 19 H 0.065 0.935 20 H 0.066 0.934 21 H 0.037 0.963 22 H 0.080 0.920 23 H 0.073 0.927 24 H 0.098 0.902 25 H 0.058 0.942 26 H 0.090 0.910 27 H 0.096 0.904 28 H 0.096 0.904 29 H 0.058 0.942 30 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges 1.214 -9.701 -1.178 9.848 hybrid contribution 0.497 0.872 0.082 1.007 sum 1.710 -8.829 -1.096 9.060 Atomic orbital electron populations 1.70069 1.06958 1.26608 1.52897 1.25766 0.95702 1.02280 0.95726 0.85676 0.78683 0.79894 0.78095 1.20148 1.21014 1.19845 1.21613 0.93685 0.91806 1.48067 0.92289 1.18474 0.92053 0.92769 0.93744 0.98926 1.21736 0.99320 0.95163 0.96763 1.21417 1.00256 0.95715 0.97920 1.21333 0.98327 0.98276 0.97415 1.20382 0.95503 0.97864 1.00671 1.21140 0.99951 0.97473 0.99168 1.21512 0.84661 0.93845 0.93880 0.93559 1.86823 1.25105 1.41281 1.84391 0.93484 0.93379 0.96287 0.91994 0.92687 0.90220 0.94180 0.90971 0.90403 0.90366 0.94156 0.78238 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -56.16 11.43 21.45 0.25 -55.92 16 2 C 0.00 0.12 5.29 84.65 0.45 0.57 16 3 Si 0.95 46.71 29.54 68.60 2.03 48.74 16 4 H -0.28 -13.11 7.11 99.48 0.71 -12.40 16 5 H -0.28 -13.64 7.11 99.48 0.71 -12.93 16 6 H -0.27 -13.27 7.11 99.48 0.71 -12.57 16 7 C -0.51 -30.28 7.95 25.60 0.20 -30.08 16 8 H 0.06 3.54 6.41 -2.91 -0.02 3.53 16 9 C 0.05 2.50 1.59 -12.00 -0.02 2.48 16 10 H -0.01 -0.43 6.62 -2.39 -0.02 -0.44 16 11 C -0.09 -4.46 4.66 31.29 0.15 -4.31 16 12 C -0.12 -4.21 5.31 30.11 0.16 -4.05 16 13 C -0.12 -3.78 5.61 30.20 0.17 -3.61 16 14 C -0.11 -3.00 5.26 28.74 0.15 -2.85 16 15 C -0.14 -4.66 4.93 28.74 0.14 -4.52 16 16 C 0.12 4.98 2.96 30.20 0.09 5.06 16 17 H 0.05 1.83 6.97 -2.39 -0.02 1.81 16 18 O -0.57 -24.18 11.18 -148.98 -1.67 -25.84 16 19 H 0.26 14.85 8.31 -92.71 -0.77 14.08 16 20 H 0.05 2.64 6.56 -2.38 -0.02 2.63 16 21 H 0.02 0.95 7.97 -2.38 -0.02 0.93 16 22 H 0.06 2.03 6.63 -2.39 -0.02 2.02 16 23 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 24 H 0.08 2.11 8.14 -2.39 -0.02 2.10 16 25 H 0.04 1.55 6.97 -2.39 -0.02 1.53 16 26 H 0.07 1.80 7.47 -2.39 -0.02 1.78 16 27 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 28 H 0.08 2.12 8.08 -2.39 -0.02 2.10 16 29 H 0.04 1.53 7.46 -2.39 -0.02 1.51 16 30 H 0.37 10.95 9.05 -74.06 -0.67 10.28 16 Total: -1.00 -67.32 229.97 2.54 -64.78 By element: Atomic # 1 Polarization: 9.10 SS G_CDS: 0.45 Total: 9.55 kcal Atomic # 6 Polarization: -42.80 SS G_CDS: 1.49 Total: -41.31 kcal Atomic # 7 Polarization: -56.16 SS G_CDS: 0.25 Total: -55.92 kcal Atomic # 8 Polarization: -24.18 SS G_CDS: -1.67 Total: -25.84 kcal Atomic # 14 Polarization: 46.71 SS G_CDS: 2.03 Total: 48.74 kcal Total: -67.32 2.54 -64.78 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084233609.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.487 kcal (2) G-P(sol) polarization free energy of solvation -67.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.808 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.544 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.777 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.264 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds