Wall clock time and date at job start Mon Mar 30 2020 02:18:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 119.99828 * 2 1 4 4 H 1.48506 * 109.47297 * 359.97438 * 3 2 1 5 5 H 1.48503 * 109.47261 * 239.99650 * 3 2 1 6 6 H 1.48500 * 109.47454 * 119.99643 * 3 2 1 7 7 C 1.37875 * 120.00192 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00135 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00046 * 0.02562 * 7 2 1 10 10 H 1.08997 * 108.85639 * 59.99790 * 9 7 2 11 11 C 1.50476 * 108.87289 * 301.43353 * 9 7 2 12 12 C 1.54373 * 108.45246 * 145.00758 * 11 9 7 13 13 C 1.45539 * 112.33994 * 80.10062 * 12 11 9 14 14 C 1.54247 * 112.40565 * 298.03228 * 13 12 11 15 15 C 1.50474 * 108.51944 * 79.98830 * 14 13 12 16 16 C 1.54066 * 112.49639 * 265.84907 * 15 14 13 17 17 H 1.08994 * 108.72656 * 280.91184 * 16 15 14 18 18 O 1.42899 * 108.80743 * 162.57737 * 16 15 14 19 19 H 0.97001 * 119.99934 * 179.97438 * 1 2 3 20 20 H 1.09000 * 109.63147 * 264.78233 * 11 9 7 21 21 H 1.08997 * 109.62728 * 25.36834 * 11 9 7 22 22 H 1.08999 * 108.95781 * 319.34200 * 12 11 9 23 23 H 1.09001 * 108.90095 * 200.81641 * 12 11 9 24 24 H 1.08997 * 108.89618 * 177.27891 * 13 12 11 25 25 H 1.08996 * 108.89726 * 58.77993 * 13 12 11 26 26 H 1.09006 * 109.62367 * 320.28173 * 14 13 12 27 27 H 1.08998 * 109.78959 * 199.80007 * 14 13 12 28 28 H 1.08997 * 108.87125 * 145.07036 * 15 14 13 29 29 H 1.09000 * 108.79234 * 26.57473 * 15 14 13 30 30 H 0.96705 * 114.00474 * 56.70944 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 1.2840 2.7465 -0.0006 5 1 3.1029 1.6964 -1.2125 6 1 3.1028 1.6966 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 1 0.6286 -2.5465 -0.8930 11 6 0.3642 -2.5491 1.2151 12 6 -0.9363 -3.2916 0.8402 13 6 -0.7697 -4.7374 0.8473 14 6 0.2711 -5.2143 -0.1863 15 6 1.6460 -5.0055 0.3885 16 6 2.2640 -3.6594 -0.0355 17 1 2.6516 -3.7563 -1.0496 18 8 3.3477 -3.3527 0.8439 19 1 -0.4850 -0.8401 -0.0004 20 1 0.8731 -3.0817 2.0185 21 1 0.1267 -1.5352 1.5370 22 1 -1.2492 -2.9772 -0.1555 23 1 -1.7149 -3.0225 1.5541 24 1 -1.7288 -5.2044 0.6238 25 1 -0.4495 -5.0509 1.8409 26 1 0.1665 -4.6364 -1.1046 27 1 0.1205 -6.2724 -0.4005 28 1 2.2954 -5.8135 0.0516 29 1 1.5803 -5.0365 1.4760 30 1 4.0314 -4.0357 0.8790 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084233614.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:18:11 Heat of formation + Delta-G solvation = -72.035781 kcal Electronic energy + Delta-G solvation = -12075.244709 eV Core-core repulsion = 10062.590565 eV Total energy + Delta-G solvation = -2012.654145 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.120 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -38.61163 -35.20501 -33.59384 -30.65653 -29.60378 -25.28298 -23.47434 -22.38113 -19.86285 -18.61912 -17.06234 -16.15596 -14.66589 -14.52559 -13.63968 -13.47916 -12.84954 -12.63250 -12.34558 -11.98622 -11.37982 -11.13542 -10.77803 -10.70760 -10.14091 -10.03844 -9.92804 -9.87648 -9.73045 -9.19663 -8.86551 -8.25499 -8.02608 -6.14052 -3.86253 3.52683 3.55443 3.73760 4.66217 5.07994 5.27848 5.33890 5.47973 5.55277 5.86373 5.94528 5.99528 6.16297 6.22963 6.30705 6.37929 6.65898 6.68044 6.75514 6.82598 6.84977 7.17027 7.38767 7.54107 7.88068 8.37058 8.59600 8.69712 9.09266 9.82744 11.21631 Molecular weight = 184.12amu Principal moments of inertia in cm(-1) A = 0.050675 B = 0.015219 C = 0.012503 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 552.409892 B = 1839.415252 C = 2238.881167 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C 0.011 3.989 3 Si 1.067 2.933 4 H -0.285 1.285 5 H -0.291 1.291 6 H -0.290 1.290 7 C -0.575 4.575 8 H 0.055 0.945 9 C 0.042 3.958 10 H 0.022 0.978 11 C -0.110 4.110 12 C -0.123 4.123 13 C -0.107 4.107 14 C -0.112 4.112 15 C -0.150 4.150 16 C 0.120 3.880 17 H 0.031 0.969 18 O -0.546 6.546 19 H 0.275 0.725 20 H 0.040 0.960 21 H 0.079 0.921 22 H 0.055 0.945 23 H 0.044 0.956 24 H 0.046 0.954 25 H 0.052 0.948 26 H 0.066 0.934 27 H 0.052 0.948 28 H 0.044 0.956 29 H 0.065 0.935 30 H 0.347 0.653 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.123 -8.733 0.581 8.824 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.191 4.191 3 Si 0.896 3.104 4 H -0.211 1.211 5 H -0.218 1.218 6 H -0.217 1.217 7 C -0.614 4.614 8 H 0.074 0.926 9 C 0.024 3.976 10 H 0.040 0.960 11 C -0.148 4.148 12 C -0.161 4.161 13 C -0.145 4.145 14 C -0.149 4.149 15 C -0.188 4.188 16 C 0.062 3.938 17 H 0.049 0.951 18 O -0.348 6.348 19 H 0.088 0.912 20 H 0.059 0.941 21 H 0.098 0.902 22 H 0.073 0.927 23 H 0.063 0.937 24 H 0.065 0.935 25 H 0.070 0.930 26 H 0.085 0.915 27 H 0.071 0.929 28 H 0.063 0.937 29 H 0.083 0.917 30 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges 0.561 -6.522 0.670 6.581 hybrid contribution 0.534 -2.314 -0.110 2.377 sum 1.095 -8.836 0.561 8.921 Atomic orbital electron populations 1.70780 1.06803 1.31285 1.47468 1.25714 0.96591 1.02381 0.94448 0.83574 0.74825 0.75610 0.76367 1.21071 1.21754 1.21656 1.22008 0.94745 0.90993 1.53609 0.92640 1.18669 0.92105 0.92835 0.94002 0.95989 1.21587 0.93496 1.00454 0.99284 1.20578 0.99491 0.94790 1.01226 1.20455 0.97973 0.97409 0.98637 1.21214 0.94737 0.99605 0.99354 1.22156 0.96885 0.98184 1.01609 1.22364 0.87856 0.93210 0.90402 0.95128 1.86865 1.33678 1.46513 1.67705 0.91239 0.94078 0.90237 0.92660 0.93745 0.93538 0.92968 0.91517 0.92888 0.93675 0.91678 0.81012 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -28.15 12.75 55.43 0.71 -27.44 16 2 C 0.01 0.32 5.02 -17.82 -0.09 0.23 16 3 Si 1.07 26.25 29.90 -169.99 -5.08 21.17 16 4 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 5 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 6 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 7 C -0.57 -16.74 8.03 -34.44 -0.28 -17.02 16 8 H 0.06 1.66 6.98 -52.48 -0.37 1.29 16 9 C 0.04 1.07 1.26 -92.48 -0.12 0.95 16 10 H 0.02 0.60 6.48 -51.93 -0.34 0.26 16 11 C -0.11 -2.66 4.19 -27.27 -0.11 -2.77 16 12 C -0.12 -2.49 4.90 -29.53 -0.14 -2.64 16 13 C -0.11 -1.81 5.26 -29.60 -0.16 -1.97 16 14 C -0.11 -1.84 5.61 -27.34 -0.15 -1.99 16 15 C -0.15 -2.61 4.89 -27.44 -0.13 -2.74 16 16 C 0.12 2.58 3.09 -25.62 -0.08 2.50 16 17 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 18 O -0.55 -11.83 11.86 -35.23 -0.42 -12.24 16 19 H 0.28 8.15 5.18 -40.82 -0.21 7.94 16 20 H 0.04 0.97 6.97 -51.93 -0.36 0.61 16 21 H 0.08 2.19 5.57 -51.93 -0.29 1.90 16 22 H 0.05 1.18 7.22 -51.93 -0.38 0.80 16 23 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 24 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 25 H 0.05 0.85 7.47 -51.93 -0.39 0.47 16 26 H 0.07 1.18 6.97 -51.93 -0.36 0.82 16 27 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 28 H 0.04 0.67 8.14 -51.93 -0.42 0.24 16 29 H 0.06 1.15 6.61 -51.93 -0.34 0.81 16 30 H 0.35 5.52 9.04 45.56 0.41 5.93 16 LS Contribution 227.27 15.07 3.42 3.42 Total: -1.00 -31.62 227.27 -6.16 -37.78 By element: Atomic # 1 Polarization: 6.28 SS G_CDS: -3.53 Total: 2.75 kcal Atomic # 6 Polarization: -24.18 SS G_CDS: -1.26 Total: -25.44 kcal Atomic # 7 Polarization: -28.15 SS G_CDS: 0.71 Total: -27.44 kcal Atomic # 8 Polarization: -11.83 SS G_CDS: -0.42 Total: -12.24 kcal Atomic # 14 Polarization: 26.25 SS G_CDS: -5.08 Total: 21.17 kcal Total LS contribution 3.42 Total: 3.42 kcal Total: -31.62 -6.16 -37.78 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084233614.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.254 kcal (2) G-P(sol) polarization free energy of solvation -31.618 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.872 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.164 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.782 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.036 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds