Wall clock time and date at job start Mon Mar 30 2020 02:18:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 119.99828 * 2 1 4 4 H 1.48506 * 109.47297 * 359.97438 * 3 2 1 5 5 H 1.48503 * 109.47261 * 239.99650 * 3 2 1 6 6 H 1.48500 * 109.47454 * 119.99643 * 3 2 1 7 7 C 1.37875 * 120.00192 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00135 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00046 * 0.02562 * 7 2 1 10 10 H 1.08997 * 108.85639 * 59.99790 * 9 7 2 11 11 C 1.50476 * 108.87289 * 301.43353 * 9 7 2 12 12 C 1.54373 * 108.45246 * 145.00758 * 11 9 7 13 13 C 1.45539 * 112.33994 * 80.10062 * 12 11 9 14 14 C 1.54247 * 112.40565 * 298.03228 * 13 12 11 15 15 C 1.50474 * 108.51944 * 79.98830 * 14 13 12 16 16 C 1.54066 * 112.49639 * 265.84907 * 15 14 13 17 17 H 1.08994 * 108.72656 * 280.91184 * 16 15 14 18 18 O 1.42899 * 108.80743 * 162.57737 * 16 15 14 19 19 H 0.97001 * 119.99934 * 179.97438 * 1 2 3 20 20 H 1.09000 * 109.63147 * 264.78233 * 11 9 7 21 21 H 1.08997 * 109.62728 * 25.36834 * 11 9 7 22 22 H 1.08999 * 108.95781 * 319.34200 * 12 11 9 23 23 H 1.09001 * 108.90095 * 200.81641 * 12 11 9 24 24 H 1.08997 * 108.89618 * 177.27891 * 13 12 11 25 25 H 1.08996 * 108.89726 * 58.77993 * 13 12 11 26 26 H 1.09006 * 109.62367 * 320.28173 * 14 13 12 27 27 H 1.08998 * 109.78959 * 199.80007 * 14 13 12 28 28 H 1.08997 * 108.87125 * 145.07036 * 15 14 13 29 29 H 1.09000 * 108.79234 * 26.57473 * 15 14 13 30 30 H 0.96705 * 114.00474 * 56.70944 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 1.2840 2.7465 -0.0006 5 1 3.1029 1.6964 -1.2125 6 1 3.1028 1.6966 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 1 0.6286 -2.5465 -0.8930 11 6 0.3642 -2.5491 1.2151 12 6 -0.9363 -3.2916 0.8402 13 6 -0.7697 -4.7374 0.8473 14 6 0.2711 -5.2143 -0.1863 15 6 1.6460 -5.0055 0.3885 16 6 2.2640 -3.6594 -0.0355 17 1 2.6516 -3.7563 -1.0496 18 8 3.3477 -3.3527 0.8439 19 1 -0.4850 -0.8401 -0.0004 20 1 0.8731 -3.0817 2.0185 21 1 0.1267 -1.5352 1.5370 22 1 -1.2492 -2.9772 -0.1555 23 1 -1.7149 -3.0225 1.5541 24 1 -1.7288 -5.2044 0.6238 25 1 -0.4495 -5.0509 1.8409 26 1 0.1665 -4.6364 -1.1046 27 1 0.1205 -6.2724 -0.4005 28 1 2.2954 -5.8135 0.0516 29 1 1.5803 -5.0365 1.4760 30 1 4.0314 -4.0357 0.8790 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084233614.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:18:11 Heat of formation + Delta-G solvation = -93.988854 kcal Electronic energy + Delta-G solvation = -12076.196666 eV Core-core repulsion = 10062.590565 eV Total energy + Delta-G solvation = -2013.606101 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.120 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.27754 -36.84795 -35.56466 -32.24327 -31.52381 -27.24141 -25.11802 -24.24582 -21.39610 -20.41205 -19.09748 -17.86897 -16.27789 -16.17771 -15.63278 -15.12565 -14.45124 -14.29833 -14.02950 -13.72917 -13.13795 -12.99603 -12.57244 -12.47466 -11.94236 -11.79782 -11.72082 -11.50519 -11.23618 -10.96271 -10.54383 -10.41745 -10.12833 -8.46013 -6.18976 1.51625 1.60076 1.79514 2.61420 3.25699 3.63352 3.84754 3.92169 4.04259 4.35543 4.40682 4.44219 4.55798 4.64657 4.81777 4.90274 5.11560 5.21085 5.23872 5.24878 5.39376 5.42244 5.53183 5.64491 5.90692 6.26113 6.38384 6.75576 7.19748 7.57991 8.91380 Molecular weight = 184.12amu Principal moments of inertia in cm(-1) A = 0.050675 B = 0.015219 C = 0.012503 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 552.409892 B = 1839.415252 C = 2238.881167 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.947 5.947 2 C -0.038 4.038 3 Si 1.110 2.890 4 H -0.284 1.284 5 H -0.274 1.274 6 H -0.279 1.279 7 C -0.593 4.593 8 H 0.041 0.959 9 C 0.036 3.964 10 H -0.001 1.001 11 C -0.101 4.101 12 C -0.113 4.113 13 C -0.108 4.108 14 C -0.112 4.112 15 C -0.140 4.140 16 C 0.120 3.880 17 H 0.027 0.973 18 O -0.572 6.572 19 H 0.270 0.730 20 H 0.042 0.958 21 H 0.037 0.963 22 H 0.036 0.964 23 H 0.051 0.949 24 H 0.074 0.926 25 H 0.063 0.937 26 H 0.047 0.953 27 H 0.091 0.909 28 H 0.079 0.921 29 H 0.064 0.936 30 H 0.373 0.627 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.485 -10.344 0.782 10.480 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.586 5.586 2 C -0.236 4.236 3 Si 0.933 3.067 4 H -0.209 1.209 5 H -0.200 1.200 6 H -0.205 1.205 7 C -0.632 4.632 8 H 0.059 0.941 9 C 0.018 3.982 10 H 0.016 0.984 11 C -0.139 4.139 12 C -0.150 4.150 13 C -0.145 4.145 14 C -0.149 4.149 15 C -0.177 4.177 16 C 0.062 3.938 17 H 0.045 0.955 18 O -0.377 6.377 19 H 0.081 0.919 20 H 0.061 0.939 21 H 0.055 0.945 22 H 0.055 0.945 23 H 0.069 0.931 24 H 0.093 0.907 25 H 0.082 0.918 26 H 0.066 0.934 27 H 0.109 0.891 28 H 0.098 0.902 29 H 0.083 0.917 30 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges 0.937 -8.169 0.869 8.269 hybrid contribution 0.453 -1.822 -0.177 1.886 sum 1.390 -9.991 0.692 10.111 Atomic orbital electron populations 1.70857 1.07572 1.31157 1.49047 1.27042 0.96802 1.05918 0.93797 0.83015 0.74137 0.72111 0.77416 1.20912 1.19983 1.20454 1.22367 0.94339 0.93119 1.53327 0.94088 1.18649 0.92827 0.93344 0.93373 0.98351 1.21368 0.95345 0.98637 0.98588 1.20475 0.97343 0.97056 1.00140 1.20444 0.99856 0.94633 0.99596 1.21261 0.93928 1.01592 0.98138 1.22040 0.97871 0.96275 1.01557 1.22224 0.87224 0.93832 0.90548 0.95512 1.86768 1.34719 1.48610 1.67608 0.91868 0.93898 0.94452 0.94505 0.93066 0.90731 0.91825 0.93445 0.89092 0.90203 0.91734 0.77985 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.17 12.75 21.45 0.27 -58.90 16 2 C -0.04 -2.30 5.02 84.65 0.42 -1.88 16 3 Si 1.11 53.37 29.90 68.60 2.05 55.42 16 4 H -0.28 -13.48 7.11 99.48 0.71 -12.77 16 5 H -0.27 -12.34 7.11 99.48 0.71 -11.64 16 6 H -0.28 -12.78 7.11 99.48 0.71 -12.08 16 7 C -0.59 -35.30 8.03 25.60 0.21 -35.10 16 8 H 0.04 2.50 6.98 -2.91 -0.02 2.48 16 9 C 0.04 1.88 1.26 -12.00 -0.02 1.86 16 10 H 0.00 -0.08 6.48 -2.39 -0.02 -0.09 16 11 C -0.10 -4.95 4.19 30.24 0.13 -4.82 16 12 C -0.11 -4.50 4.90 28.78 0.14 -4.36 16 13 C -0.11 -3.34 5.26 28.74 0.15 -3.19 16 14 C -0.11 -3.32 5.61 30.20 0.17 -3.15 16 15 C -0.14 -4.41 4.89 30.14 0.15 -4.26 16 16 C 0.12 5.05 3.09 31.32 0.10 5.15 16 17 H 0.03 1.12 8.14 -2.39 -0.02 1.10 16 18 O -0.57 -24.16 11.86 -148.98 -1.77 -25.93 16 19 H 0.27 16.57 5.18 -92.71 -0.48 16.09 16 20 H 0.04 2.02 6.97 -2.39 -0.02 2.00 16 21 H 0.04 2.12 5.57 -2.39 -0.01 2.11 16 22 H 0.04 1.58 7.22 -2.39 -0.02 1.56 16 23 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 24 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 25 H 0.06 1.86 7.47 -2.39 -0.02 1.84 16 26 H 0.05 1.60 6.97 -2.38 -0.02 1.59 16 27 H 0.09 2.07 8.14 -2.39 -0.02 2.05 16 28 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 29 H 0.06 2.07 6.61 -2.39 -0.02 2.05 16 30 H 0.37 11.09 9.04 -74.05 -0.67 10.42 16 Total: -1.00 -69.36 227.27 2.75 -66.61 By element: Atomic # 1 Polarization: 11.79 SS G_CDS: 0.74 Total: 12.53 kcal Atomic # 6 Polarization: -51.19 SS G_CDS: 1.45 Total: -49.74 kcal Atomic # 7 Polarization: -59.17 SS G_CDS: 0.27 Total: -58.90 kcal Atomic # 8 Polarization: -24.16 SS G_CDS: -1.77 Total: -25.93 kcal Atomic # 14 Polarization: 53.37 SS G_CDS: 2.05 Total: 55.42 kcal Total: -69.36 2.75 -66.61 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084233614.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.375 kcal (2) G-P(sol) polarization free energy of solvation -69.359 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.735 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.746 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.613 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.989 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds