Wall clock time and date at job start Mon Mar 30 2020 02:38:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53004 * 109.46987 * 2 1 4 4 H 1.08995 * 110.43471 * 52.45866 * 3 2 1 5 5 C 1.54886 * 110.59776 * 289.83914 * 3 2 1 6 6 C 1.54896 * 102.74878 * 203.32175 * 5 3 2 7 7 C 1.54265 * 104.18934 * 37.94722 * 6 5 3 8 8 O 1.42898 * 110.07528 * 95.69953 * 7 6 5 9 9 C 1.50706 * 110.02762 * 217.10413 * 7 6 5 10 10 H 1.07999 * 119.99892 * 122.02769 * 9 7 6 11 11 C 1.37882 * 119.99957 * 302.01778 * 9 7 6 12 12 N 1.31510 * 120.00233 * 195.62603 * 11 9 7 13 13 Si 1.86799 * 119.99900 * 15.63214 * 11 9 7 14 14 H 1.48504 * 109.47086 * 179.97438 * 13 11 9 15 15 H 1.48506 * 109.47236 * 59.99800 * 13 11 9 16 16 H 1.48503 * 109.47110 * 299.99626 * 13 11 9 17 17 C 1.53866 * 106.60391 * 336.38793 * 7 6 5 18 18 H 1.09000 * 109.47103 * 59.99788 * 1 2 3 19 19 H 1.08997 * 109.47150 * 179.97438 * 1 2 3 20 20 H 1.08997 * 109.46841 * 299.99910 * 1 2 3 21 21 H 1.09002 * 109.47474 * 240.00409 * 2 1 3 22 22 H 1.08993 * 109.47424 * 119.99955 * 2 1 3 23 23 H 1.08997 * 110.76201 * 321.63796 * 5 3 2 24 24 H 1.09001 * 110.75576 * 84.82963 * 5 3 2 25 25 H 1.08990 * 110.48575 * 279.26719 * 6 5 3 26 26 H 1.08999 * 110.48465 * 156.62345 * 6 5 3 27 27 H 0.96705 * 114.00436 * 67.66651 * 8 7 6 28 28 H 0.97003 * 119.99586 * 354.65561 * 12 11 9 29 29 H 1.09001 * 110.03401 * 119.28714 * 17 7 6 30 30 H 1.09008 * 110.03626 * 240.71973 * 17 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.5800 2.0088 0.8099 5 6 1.7577 2.1203 -1.3638 6 6 2.8148 3.2515 -1.4087 7 6 4.0698 2.6218 -0.7697 8 8 4.9357 2.1139 -1.7867 9 6 4.7963 3.6482 0.0610 10 1 4.9710 3.4673 1.1113 11 6 5.2381 4.8180 -0.5200 12 7 6.1238 5.5666 0.1002 13 14 4.5786 5.3395 -2.1881 14 1 5.2068 6.6239 -2.5892 15 1 3.1061 5.5136 -2.1058 16 1 4.8982 4.2959 -3.1951 17 6 3.5773 1.4717 0.1259 18 1 -0.3633 0.5139 -0.8900 19 1 -0.3633 -1.0276 -0.0005 20 1 -0.3633 0.5138 0.8900 21 1 1.8934 -0.5138 -0.8900 22 1 1.8934 -0.5138 0.8899 23 1 1.9089 1.4176 -2.1831 24 1 0.7480 2.5302 -1.3898 25 1 2.4800 4.1098 -0.8263 26 1 3.0172 3.5439 -2.4390 27 1 5.3385 2.7984 -2.3385 28 1 6.4082 5.3375 0.9989 29 1 3.9979 0.5259 -0.2158 30 1 3.8636 1.6558 1.1614 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000085879189.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:38:08 Heat of formation + Delta-G solvation = -93.615601 kcal Electronic energy + Delta-G solvation = -11874.950602 eV Core-core repulsion = 9861.360686 eV Total energy + Delta-G solvation = -2013.589916 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.120 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.11296 -36.63720 -34.58049 -33.09537 -29.79509 -28.88493 -25.33317 -23.51242 -21.51666 -20.50374 -19.79980 -17.19231 -16.51165 -16.50132 -15.44447 -15.01054 -14.81916 -14.18440 -13.88584 -13.59574 -13.16226 -12.91822 -12.51448 -12.26317 -12.14533 -11.88751 -11.58525 -11.43814 -11.27085 -11.20048 -10.89955 -10.85329 -10.17278 -8.82720 -6.55197 1.34312 1.46062 1.65381 2.37443 2.92986 3.65573 3.78580 3.89715 4.13402 4.39920 4.43672 4.56592 4.63082 4.81696 4.86623 4.88179 4.99838 5.06778 5.14678 5.23560 5.33435 5.36947 5.41929 5.51334 5.63340 5.88548 5.92597 6.41627 7.08870 7.28672 8.50340 Molecular weight = 184.12amu Principal moments of inertia in cm(-1) A = 0.061443 B = 0.013600 C = 0.012733 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 455.600640 B = 2058.382207 C = 2198.424173 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.111 4.111 3 C -0.085 4.085 4 H 0.068 0.932 5 C -0.103 4.103 6 C -0.165 4.165 7 C 0.206 3.794 8 O -0.594 6.594 9 C -0.626 4.626 10 H 0.016 0.984 11 C -0.022 4.022 12 N -0.930 5.930 13 Si 1.092 2.908 14 H -0.297 1.297 15 H -0.246 1.246 16 H -0.250 1.250 17 C -0.095 4.095 18 H 0.059 0.941 19 H 0.065 0.935 20 H 0.053 0.947 21 H 0.062 0.938 22 H 0.059 0.941 23 H 0.072 0.928 24 H 0.082 0.918 25 H 0.063 0.937 26 H 0.061 0.939 27 H 0.361 0.639 28 H 0.253 0.747 29 H 0.058 0.942 30 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.530 -7.632 -4.468 14.531 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.148 4.148 3 C -0.103 4.103 4 H 0.086 0.914 5 C -0.140 4.140 6 C -0.203 4.203 7 C 0.166 3.834 8 O -0.403 6.403 9 C -0.664 4.664 10 H 0.034 0.966 11 C -0.220 4.220 12 N -0.565 5.565 13 Si 0.913 3.087 14 H -0.225 1.225 15 H -0.170 1.170 16 H -0.176 1.176 17 C -0.133 4.133 18 H 0.078 0.922 19 H 0.084 0.916 20 H 0.073 0.927 21 H 0.081 0.919 22 H 0.078 0.922 23 H 0.091 0.909 24 H 0.101 0.899 25 H 0.082 0.918 26 H 0.080 0.920 27 H 0.210 0.790 28 H 0.062 0.938 29 H 0.077 0.923 30 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -11.561 -7.084 -5.337 14.571 hybrid contribution 0.864 -0.252 1.776 1.991 sum -10.697 -7.337 -3.561 13.451 Atomic orbital electron populations 1.21748 0.94255 1.02184 1.02140 1.21526 0.97050 0.94428 1.01836 1.21969 0.93234 0.97240 0.97897 0.91365 1.22478 0.98126 0.96467 0.96958 1.23463 0.97918 0.99383 0.99526 1.19812 0.86627 0.91579 0.85349 1.86379 1.65657 1.39349 1.48962 1.22851 1.41631 1.05348 0.96532 0.96576 1.27444 0.92389 0.93445 1.08756 1.70961 1.27563 1.44041 1.13966 0.83732 0.77628 0.76233 0.71059 1.22464 1.16983 1.17574 1.22055 0.96360 0.97314 0.97548 0.92174 0.91596 0.92740 0.91941 0.92231 0.90935 0.89896 0.91843 0.92026 0.78968 0.93822 0.92302 0.94171 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.01 9.79 71.98 0.70 -2.30 16 2 C -0.11 -2.91 5.28 30.60 0.16 -2.74 16 3 C -0.08 -2.84 2.85 -9.72 -0.03 -2.87 16 4 H 0.07 2.28 8.14 -2.39 -0.02 2.26 16 5 C -0.10 -3.35 5.68 31.89 0.18 -3.17 16 6 C -0.17 -6.83 3.74 31.67 0.12 -6.71 16 7 C 0.21 10.01 0.96 -10.82 -0.01 10.00 16 8 O -0.59 -29.23 12.90 -148.98 -1.92 -31.16 16 9 C -0.63 -36.71 8.56 25.60 0.22 -36.50 16 10 H 0.02 1.04 7.58 -2.91 -0.02 1.02 16 11 C -0.02 -1.27 5.37 84.66 0.45 -0.82 16 12 N -0.93 -58.85 13.69 21.45 0.29 -58.55 16 13 Si 1.09 49.07 23.22 68.60 1.59 50.66 16 14 H -0.30 -13.64 7.11 99.48 0.71 -12.94 16 15 H -0.25 -9.85 5.95 99.48 0.59 -9.26 16 16 H -0.25 -9.84 5.75 99.48 0.57 -9.26 16 17 C -0.10 -4.09 5.83 31.32 0.18 -3.91 16 18 H 0.06 1.18 7.56 -2.39 -0.02 1.16 16 19 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 20 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 21 H 0.06 1.62 8.03 -2.39 -0.02 1.60 16 22 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 23 H 0.07 2.22 7.97 -2.39 -0.02 2.20 16 24 H 0.08 2.25 8.05 -2.39 -0.02 2.23 16 25 H 0.06 2.76 6.74 -2.39 -0.02 2.74 16 26 H 0.06 2.40 5.38 -2.39 -0.01 2.38 16 27 H 0.36 16.84 5.62 -74.05 -0.42 16.43 16 28 H 0.25 16.32 8.73 -92.71 -0.81 15.51 16 29 H 0.06 2.46 7.65 -2.39 -0.02 2.45 16 30 H 0.04 1.85 7.37 -2.38 -0.02 1.83 16 Total: -1.00 -66.36 229.92 2.35 -64.01 By element: Atomic # 1 Polarization: 23.65 SS G_CDS: 0.41 Total: 24.05 kcal Atomic # 6 Polarization: -51.00 SS G_CDS: 1.98 Total: -49.02 kcal Atomic # 7 Polarization: -58.85 SS G_CDS: 0.29 Total: -58.55 kcal Atomic # 8 Polarization: -29.23 SS G_CDS: -1.92 Total: -31.16 kcal Atomic # 14 Polarization: 49.07 SS G_CDS: 1.59 Total: 50.66 kcal Total: -66.36 2.35 -64.01 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085879189.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.607 kcal (2) G-P(sol) polarization free energy of solvation -66.363 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.970 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.354 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.009 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.616 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds