Wall clock time and date at job start Mon Mar 30 2020 02:38:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.46964 * 2 1 4 4 H 1.09003 * 110.02167 * 306.39021 * 3 2 1 5 5 C 1.53877 * 110.03107 * 67.83317 * 3 2 1 6 6 C 1.54269 * 106.59792 * 119.28407 * 5 3 2 7 7 C 1.55234 * 104.23325 * 23.60905 * 6 5 3 8 8 O 1.42907 * 110.76769 * 80.31375 * 7 6 5 9 9 C 1.50700 * 110.90114 * 203.79518 * 7 6 5 10 10 H 1.07995 * 120.00028 * 115.74289 * 9 7 6 11 11 C 1.37884 * 119.99578 * 295.74225 * 9 7 6 12 12 N 1.31505 * 120.00074 * 5.86071 * 11 9 7 13 13 Si 1.86800 * 119.99548 * 185.85817 * 11 9 7 14 14 H 1.48500 * 109.47051 * 84.90621 * 13 11 9 15 15 H 1.48502 * 109.47087 * 204.89982 * 13 11 9 16 16 H 1.48498 * 109.47439 * 324.90474 * 13 11 9 17 17 C 1.54263 * 110.03228 * 184.99789 * 3 2 1 18 18 H 1.09000 * 109.47270 * 300.00009 * 1 2 3 19 19 H 1.09007 * 109.47085 * 59.99868 * 1 2 3 20 20 H 1.09002 * 109.47242 * 179.97438 * 1 2 3 21 21 H 1.08997 * 109.47027 * 240.00460 * 2 1 3 22 22 H 1.08999 * 109.46942 * 119.99847 * 2 1 3 23 23 H 1.09002 * 110.02996 * 238.56573 * 5 3 2 24 24 H 1.08995 * 110.03152 * 359.97438 * 5 3 2 25 25 H 1.09003 * 110.48775 * 142.28820 * 6 5 3 26 26 H 1.08998 * 110.48722 * 264.93289 * 6 5 3 27 27 H 0.96698 * 113.99512 * 61.21118 * 8 7 6 28 28 H 0.97006 * 119.99824 * 179.97438 * 12 11 9 29 29 H 1.09005 * 110.48724 * 335.78465 * 17 3 2 30 30 H 1.09006 * 110.48879 * 98.29114 * 17 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5915 1.9969 -0.8244 5 6 1.7014 2.1213 1.3388 6 6 3.0449 2.5270 1.9794 7 6 4.0230 2.6348 0.7788 8 8 3.8606 3.8837 0.1035 9 6 5.4493 2.4510 1.2292 10 1 6.0212 1.6043 0.8793 11 6 6.0241 3.3639 2.0879 12 7 5.2960 4.3293 2.6048 13 14 7.8371 3.2290 2.5172 14 1 8.6447 3.9122 1.4749 15 1 8.0832 3.8708 3.8336 16 1 8.2248 1.7971 2.5843 17 6 3.5773 1.4595 -0.1263 18 1 -0.3634 0.5138 0.8900 19 1 -0.3634 0.5139 -0.8900 20 1 -0.3634 -1.0277 -0.0005 21 1 1.8933 -0.5137 -0.8900 22 1 1.8933 -0.5138 0.8900 23 1 1.0886 3.0057 1.1646 24 1 1.1734 1.4231 1.9883 25 1 2.9522 3.4892 2.4831 26 1 3.3815 1.7607 2.6776 27 1 4.0434 4.6561 0.6558 28 1 5.7003 4.9713 3.2093 29 1 3.9999 0.5207 0.2320 30 1 3.8733 1.6402 -1.1597 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000085879192.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:38:10 Heat of formation + Delta-G solvation = -81.738613 kcal Electronic energy + Delta-G solvation = -11788.004931 eV Core-core repulsion = 9774.930040 eV Total energy + Delta-G solvation = -2013.074891 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.120 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -38.00949 -34.60461 -32.02957 -31.21054 -27.87925 -26.87361 -23.93766 -22.05299 -19.06815 -18.70543 -16.81985 -15.16714 -14.76926 -14.20656 -13.80276 -13.30251 -12.78728 -12.59784 -11.74001 -11.49177 -11.36246 -11.12208 -10.86926 -10.72691 -10.43579 -10.38275 -10.04519 -9.82398 -9.64262 -9.38990 -8.96705 -8.50312 -7.91489 -6.10510 -4.17353 3.27964 3.34237 3.37245 4.38042 5.14618 5.35266 5.40855 5.53838 5.82123 5.94222 5.98377 6.19057 6.28018 6.39391 6.44470 6.49078 6.65353 6.78787 6.87059 6.98191 7.04400 7.18873 7.40548 7.64213 7.70544 7.95484 8.30161 8.84565 9.50721 9.59031 10.95587 Molecular weight = 184.12amu Principal moments of inertia in cm(-1) A = 0.071460 B = 0.011449 C = 0.011037 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 391.735911 B = 2445.055545 C = 2536.308359 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.117 4.117 3 C -0.089 4.089 4 H 0.059 0.941 5 C -0.118 4.118 6 C -0.126 4.126 7 C 0.249 3.751 8 O -0.588 6.588 9 C -0.533 4.533 10 H 0.059 0.941 11 C 0.069 3.931 12 N -0.896 5.896 13 Si 0.896 3.104 14 H -0.279 1.279 15 H -0.287 1.287 16 H -0.274 1.274 17 C -0.102 4.102 18 H 0.054 0.946 19 H 0.049 0.951 20 H 0.045 0.955 21 H 0.054 0.946 22 H 0.059 0.941 23 H 0.047 0.953 24 H 0.045 0.955 25 H 0.068 0.932 26 H 0.051 0.949 27 H 0.375 0.625 28 H 0.264 0.736 29 H 0.064 0.936 30 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.582 -4.659 -1.878 7.510 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.154 4.154 3 C -0.107 4.107 4 H 0.078 0.922 5 C -0.156 4.156 6 C -0.165 4.165 7 C 0.210 3.790 8 O -0.395 6.395 9 C -0.571 4.571 10 H 0.077 0.923 11 C -0.132 4.132 12 N -0.536 5.536 13 Si 0.723 3.277 14 H -0.205 1.205 15 H -0.213 1.213 16 H -0.199 1.199 17 C -0.139 4.139 18 H 0.073 0.927 19 H 0.068 0.932 20 H 0.064 0.936 21 H 0.073 0.927 22 H 0.078 0.922 23 H 0.066 0.934 24 H 0.064 0.936 25 H 0.087 0.913 26 H 0.070 0.930 27 H 0.224 0.776 28 H 0.074 0.926 29 H 0.082 0.918 30 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -5.737 -4.913 -2.253 7.882 hybrid contribution 1.147 0.351 0.836 1.462 sum -4.590 -4.562 -1.417 6.625 Atomic orbital electron populations 1.21805 0.96749 1.00542 1.01657 1.21644 0.95007 0.97502 1.01280 1.21757 0.96905 0.94223 0.97843 0.92211 1.22255 0.99041 0.98458 0.95806 1.22902 0.93191 1.00973 0.99417 1.19529 0.91868 0.80968 0.86641 1.86098 1.92497 1.17112 1.43842 1.21665 0.98099 1.09913 1.27467 0.92303 1.25014 0.98165 0.95243 0.94820 1.69768 1.35552 1.16519 1.31782 0.86561 0.85251 0.78298 0.77559 1.20477 1.21253 1.19946 1.22363 0.93047 0.98768 0.99734 0.92697 0.93192 0.93607 0.92746 0.92204 0.93429 0.93601 0.91318 0.92993 0.77572 0.92578 0.91775 0.92998 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.02 9.74 37.16 0.36 -1.66 16 2 C -0.12 -1.84 5.06 -26.73 -0.14 -1.98 16 3 C -0.09 -1.70 2.92 -89.50 -0.26 -1.96 16 4 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 5 C -0.12 -2.36 5.95 -25.61 -0.15 -2.51 16 6 C -0.13 -3.02 5.33 -24.88 -0.13 -3.16 16 7 C 0.25 6.39 0.79 -89.59 -0.07 6.32 16 8 O -0.59 -15.73 13.11 -35.23 -0.46 -16.20 16 9 C -0.53 -14.80 8.25 -34.44 -0.28 -15.08 16 10 H 0.06 1.62 7.79 -52.49 -0.41 1.21 16 11 C 0.07 1.89 5.28 -17.82 -0.09 1.80 16 12 N -0.90 -24.66 10.66 55.43 0.59 -24.07 16 13 Si 0.90 21.19 29.54 -169.99 -5.02 16.17 16 14 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 15 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 16 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 17 C -0.10 -2.25 5.49 -25.07 -0.14 -2.39 16 18 H 0.05 0.74 7.00 -51.93 -0.36 0.38 16 19 H 0.05 0.64 8.14 -51.92 -0.42 0.22 16 20 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 21 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 22 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 23 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 24 H 0.05 0.83 6.87 -51.93 -0.36 0.47 16 25 H 0.07 1.75 7.40 -51.93 -0.38 1.37 16 26 H 0.05 1.27 8.05 -51.93 -0.42 0.85 16 27 H 0.38 10.13 7.52 45.56 0.34 10.47 16 28 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 29 H 0.06 1.38 7.75 -51.93 -0.40 0.97 16 30 H 0.05 1.15 8.14 -51.93 -0.42 0.73 16 LS Contribution 241.13 15.07 3.63 3.63 Total: -1.00 -27.82 241.13 -6.25 -34.07 By element: Atomic # 1 Polarization: 11.09 SS G_CDS: -4.08 Total: 7.01 kcal Atomic # 6 Polarization: -19.71 SS G_CDS: -0.91 Total: -20.61 kcal Atomic # 7 Polarization: -24.66 SS G_CDS: 0.59 Total: -24.07 kcal Atomic # 8 Polarization: -15.73 SS G_CDS: -0.46 Total: -16.20 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Total LS contribution 3.63 Total: 3.63 kcal Total: -27.82 -6.25 -34.07 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085879192.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.666 kcal (2) G-P(sol) polarization free energy of solvation -27.823 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.250 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.073 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.739 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds