Wall clock time and date at job start Mon Mar 30 2020 02:38:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.46964 * 2 1 4 4 H 1.09003 * 110.02167 * 306.39021 * 3 2 1 5 5 C 1.53877 * 110.03107 * 67.83317 * 3 2 1 6 6 C 1.54269 * 106.59792 * 119.28407 * 5 3 2 7 7 C 1.55234 * 104.23325 * 23.60905 * 6 5 3 8 8 O 1.42907 * 110.76769 * 80.31375 * 7 6 5 9 9 C 1.50700 * 110.90114 * 203.79518 * 7 6 5 10 10 H 1.07995 * 120.00028 * 115.74289 * 9 7 6 11 11 C 1.37884 * 119.99578 * 295.74225 * 9 7 6 12 12 N 1.31505 * 120.00074 * 5.86071 * 11 9 7 13 13 Si 1.86800 * 119.99548 * 185.85817 * 11 9 7 14 14 H 1.48500 * 109.47051 * 84.90621 * 13 11 9 15 15 H 1.48502 * 109.47087 * 204.89982 * 13 11 9 16 16 H 1.48498 * 109.47439 * 324.90474 * 13 11 9 17 17 C 1.54263 * 110.03228 * 184.99789 * 3 2 1 18 18 H 1.09000 * 109.47270 * 300.00009 * 1 2 3 19 19 H 1.09007 * 109.47085 * 59.99868 * 1 2 3 20 20 H 1.09002 * 109.47242 * 179.97438 * 1 2 3 21 21 H 1.08997 * 109.47027 * 240.00460 * 2 1 3 22 22 H 1.08999 * 109.46942 * 119.99847 * 2 1 3 23 23 H 1.09002 * 110.02996 * 238.56573 * 5 3 2 24 24 H 1.08995 * 110.03152 * 359.97438 * 5 3 2 25 25 H 1.09003 * 110.48775 * 142.28820 * 6 5 3 26 26 H 1.08998 * 110.48722 * 264.93289 * 6 5 3 27 27 H 0.96698 * 113.99512 * 61.21118 * 8 7 6 28 28 H 0.97006 * 119.99824 * 179.97438 * 12 11 9 29 29 H 1.09005 * 110.48724 * 335.78465 * 17 3 2 30 30 H 1.09006 * 110.48879 * 98.29114 * 17 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5915 1.9969 -0.8244 5 6 1.7014 2.1213 1.3388 6 6 3.0449 2.5270 1.9794 7 6 4.0230 2.6348 0.7788 8 8 3.8606 3.8837 0.1035 9 6 5.4493 2.4510 1.2292 10 1 6.0212 1.6043 0.8793 11 6 6.0241 3.3639 2.0879 12 7 5.2960 4.3293 2.6048 13 14 7.8371 3.2290 2.5172 14 1 8.6447 3.9122 1.4749 15 1 8.0832 3.8708 3.8336 16 1 8.2248 1.7971 2.5843 17 6 3.5773 1.4595 -0.1263 18 1 -0.3634 0.5138 0.8900 19 1 -0.3634 0.5139 -0.8900 20 1 -0.3634 -1.0277 -0.0005 21 1 1.8933 -0.5137 -0.8900 22 1 1.8933 -0.5138 0.8900 23 1 1.0886 3.0057 1.1646 24 1 1.1734 1.4231 1.9883 25 1 2.9522 3.4892 2.4831 26 1 3.3815 1.7607 2.6776 27 1 4.0434 4.6561 0.6558 28 1 5.7003 4.9713 3.2093 29 1 3.9999 0.5207 0.2320 30 1 3.8733 1.6402 -1.1597 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000085879192.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:38:10 Heat of formation + Delta-G solvation = -99.256189 kcal Electronic energy + Delta-G solvation = -11788.764550 eV Core-core repulsion = 9774.930040 eV Total energy + Delta-G solvation = -2013.834510 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.120 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -39.78187 -36.36563 -34.14357 -32.76763 -29.68888 -28.61879 -25.79503 -23.43988 -21.01519 -20.28756 -18.87752 -16.96106 -16.72197 -15.91972 -15.55174 -14.89655 -14.28208 -14.15898 -13.62173 -13.20157 -13.02148 -12.75222 -12.66201 -12.39232 -12.25757 -12.06746 -11.82409 -11.44093 -11.20939 -11.10219 -10.88490 -10.53351 -9.96453 -8.17871 -6.32921 1.39409 1.41310 1.50012 2.39513 3.05123 3.92262 3.97967 4.03131 4.27289 4.51739 4.61354 4.64458 4.82688 4.93624 5.04952 5.09238 5.11704 5.22502 5.26651 5.31937 5.46487 5.50254 5.59681 5.70010 5.77150 5.93558 6.23826 6.72725 7.38308 7.46339 8.86232 Molecular weight = 184.12amu Principal moments of inertia in cm(-1) A = 0.071460 B = 0.011449 C = 0.011037 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 391.735911 B = 2445.055545 C = 2536.308359 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.113 4.113 3 C -0.082 4.082 4 H 0.060 0.940 5 C -0.110 4.110 6 C -0.120 4.120 7 C 0.229 3.771 8 O -0.595 6.595 9 C -0.562 4.562 10 H 0.051 0.949 11 C 0.027 3.973 12 N -0.913 5.913 13 Si 0.956 3.044 14 H -0.277 1.277 15 H -0.280 1.280 16 H -0.271 1.271 17 C -0.100 4.100 18 H 0.053 0.947 19 H 0.054 0.946 20 H 0.066 0.934 21 H 0.065 0.935 22 H 0.058 0.942 23 H 0.049 0.951 24 H 0.069 0.931 25 H 0.044 0.956 26 H 0.039 0.961 27 H 0.370 0.630 28 H 0.267 0.733 29 H 0.067 0.933 30 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.115 -5.656 -1.998 8.566 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.150 4.150 3 C -0.101 4.101 4 H 0.079 0.921 5 C -0.147 4.147 6 C -0.159 4.159 7 C 0.189 3.811 8 O -0.402 6.402 9 C -0.600 4.600 10 H 0.070 0.930 11 C -0.174 4.174 12 N -0.552 5.552 13 Si 0.782 3.218 14 H -0.203 1.203 15 H -0.205 1.205 16 H -0.195 1.195 17 C -0.138 4.138 18 H 0.072 0.928 19 H 0.073 0.927 20 H 0.085 0.915 21 H 0.083 0.917 22 H 0.077 0.923 23 H 0.068 0.932 24 H 0.088 0.912 25 H 0.063 0.937 26 H 0.057 0.943 27 H 0.218 0.782 28 H 0.076 0.924 29 H 0.086 0.914 30 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -6.280 -5.917 -2.379 8.950 hybrid contribution 1.334 0.686 0.872 1.735 sum -4.946 -5.231 -1.507 7.355 Atomic orbital electron populations 1.21773 0.94660 1.02075 1.01894 1.21598 0.96783 0.94809 1.01814 1.21706 0.94535 0.96682 0.97167 0.92110 1.22192 0.96876 0.99250 0.96425 1.22722 0.95214 0.99333 0.98587 1.19849 0.91644 0.81354 0.88206 1.86090 1.92491 1.17480 1.44132 1.21973 0.99564 1.10241 1.28266 0.93043 1.25725 1.02040 0.94958 0.94638 1.69861 1.36880 1.16730 1.31746 0.85607 0.80417 0.78364 0.77414 1.20270 1.20543 1.19530 1.22347 0.95522 0.97350 0.98551 0.92809 0.92650 0.91478 0.91666 0.92325 0.93195 0.91242 0.93708 0.94252 0.78228 0.92392 0.91444 0.93577 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.42 9.74 71.98 0.70 -2.72 16 2 C -0.11 -3.22 5.06 30.59 0.15 -3.06 16 3 C -0.08 -3.00 2.92 -10.07 -0.03 -3.03 16 4 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16 5 C -0.11 -4.23 5.95 31.32 0.19 -4.04 16 6 C -0.12 -5.77 5.33 31.79 0.17 -5.60 16 7 C 0.23 11.80 0.79 -10.13 -0.01 11.79 16 8 O -0.59 -32.27 13.11 -148.98 -1.95 -34.22 16 9 C -0.56 -31.52 8.25 25.60 0.21 -31.31 16 10 H 0.05 2.87 7.79 -2.91 -0.02 2.85 16 11 C 0.03 1.45 5.28 84.66 0.45 1.90 16 12 N -0.91 -50.64 10.66 21.45 0.23 -50.41 16 13 Si 0.96 43.44 29.54 68.60 2.03 45.47 16 14 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 15 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 16 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 17 C -0.10 -4.38 5.49 31.67 0.17 -4.21 16 18 H 0.05 1.26 7.00 -2.39 -0.02 1.25 16 19 H 0.05 1.23 8.14 -2.38 -0.02 1.21 16 20 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 21 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 22 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 23 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 24 H 0.07 2.34 6.87 -2.39 -0.02 2.32 16 25 H 0.04 2.32 7.40 -2.39 -0.02 2.30 16 26 H 0.04 1.93 8.05 -2.39 -0.02 1.91 16 27 H 0.37 20.43 7.52 -74.06 -0.56 19.88 16 28 H 0.27 14.07 8.31 -92.70 -0.77 13.30 16 29 H 0.07 2.85 7.75 -2.38 -0.02 2.84 16 30 H 0.05 2.02 8.14 -2.38 -0.02 2.00 16 Total: -1.00 -58.41 241.13 2.86 -55.55 By element: Atomic # 1 Polarization: 23.35 SS G_CDS: 0.55 Total: 23.90 kcal Atomic # 6 Polarization: -42.29 SS G_CDS: 2.01 Total: -40.29 kcal Atomic # 7 Polarization: -50.64 SS G_CDS: 0.23 Total: -50.41 kcal Atomic # 8 Polarization: -32.27 SS G_CDS: -1.95 Total: -34.22 kcal Atomic # 14 Polarization: 43.44 SS G_CDS: 2.03 Total: 45.47 kcal Total: -58.41 2.86 -55.55 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085879192.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.704 kcal (2) G-P(sol) polarization free energy of solvation -58.408 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.856 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.552 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.256 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds