Wall clock time and date at job start Mon Mar 30 2020 02:09:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 H 1.09000 * 109.47390 * 2 1 4 4 C 1.50708 * 109.47025 * 240.00223 * 2 1 3 5 5 H 1.07989 * 120.00059 * 274.99160 * 4 2 1 6 6 C 1.37878 * 119.99938 * 94.98972 * 4 2 1 7 7 N 1.31508 * 120.00177 * 184.90612 * 6 4 2 8 8 Si 1.86807 * 119.99894 * 4.90651 * 6 4 2 9 9 H 1.48503 * 109.47044 * 84.81787 * 8 6 4 10 10 H 1.48503 * 109.47110 * 204.81413 * 8 6 4 11 11 H 1.48499 * 109.47347 * 324.81726 * 8 6 4 12 12 N 1.46493 * 109.47680 * 120.00495 * 2 1 3 13 13 C 1.47058 * 125.41362 * 239.72449 * 12 2 1 14 14 C 1.54100 * 103.86362 * 179.86546 * 13 12 2 15 15 N 1.47052 * 103.86174 * 0.36877 * 14 13 12 16 16 C 1.33950 * 109.18219 * 359.75905 * 15 14 13 17 17 O 1.21580 * 123.03973 * 179.97438 * 16 15 14 18 18 H 1.08999 * 109.47383 * 54.88959 * 1 2 3 19 19 H 1.09002 * 109.47204 * 294.88898 * 1 2 3 20 20 H 1.08999 * 109.47434 * 174.88809 * 1 2 3 21 21 H 0.96998 * 120.00485 * 179.97438 * 7 6 4 22 22 H 1.09006 * 110.54429 * 298.59006 * 13 12 2 23 23 H 1.09000 * 110.54966 * 61.39345 * 13 12 2 24 24 H 1.09006 * 110.75621 * 241.67479 * 14 13 12 25 25 H 1.09000 * 110.46732 * 118.92609 * 14 13 12 26 26 H 0.97003 * 125.41039 * 179.75391 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0322 -0.7104 -1.2306 5 1 2.1355 -1.7853 -1.2291 6 6 2.3599 0.0121 -2.3582 7 7 2.7058 -0.6130 -3.4623 8 14 2.3127 1.8792 -2.3176 9 1 3.5980 2.3953 -1.7821 10 1 2.1052 2.3991 -3.6931 11 1 1.1974 2.3273 -1.4455 12 7 2.0183 -0.6907 1.1960 13 6 2.8721 -0.0953 2.2349 14 6 3.0781 -1.2409 3.2448 15 7 2.3261 -2.3628 2.6631 16 6 1.7628 -1.9665 1.5143 17 8 1.0816 -2.6986 0.8228 18 1 -0.3634 0.5910 -0.8407 19 1 -0.3634 0.4325 0.9322 20 1 -0.3634 -1.0235 -0.0916 21 1 2.9359 -0.1047 -4.2557 22 1 3.8258 0.2204 1.8117 23 1 2.3665 0.7451 2.7104 24 1 2.6725 -0.9734 4.2205 25 1 4.1359 -1.4910 3.3269 26 1 2.2500 -3.2491 3.0499 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000086681172.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:09:39 Heat of formation + Delta-G solvation = -12.556956 kcal Electronic energy + Delta-G solvation = -11583.501589 eV Core-core repulsion = 9469.886296 eV Total energy + Delta-G solvation = -2113.615293 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 184.095 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -40.13348 -35.41768 -34.68981 -32.09235 -29.84762 -27.89915 -25.17359 -22.40339 -22.06888 -18.81679 -17.15618 -16.77493 -15.77126 -15.00600 -14.24160 -13.64626 -13.36596 -13.01281 -12.50021 -12.22602 -12.19843 -11.86527 -11.15010 -11.06237 -10.66576 -10.46467 -9.78152 -9.54157 -8.86039 -8.60098 -8.54527 -7.53427 -6.06942 -4.06177 3.21411 3.31142 3.32439 3.45919 4.08025 4.36920 4.60571 4.86574 5.23493 5.29418 5.54177 5.75983 6.05648 6.12565 6.49751 6.55082 6.77419 6.89247 7.43716 7.62134 7.70199 7.80747 8.42694 8.64520 9.12995 9.46616 9.59360 11.06375 Molecular weight = 184.10amu Principal moments of inertia in cm(-1) A = 0.051753 B = 0.014877 C = 0.013847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 540.897006 B = 1881.616542 C = 2021.636208 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.268 3.732 3 H 0.044 0.956 4 C -0.512 4.512 5 H 0.087 0.913 6 C 0.072 3.928 7 N -0.892 5.892 8 Si 0.871 3.129 9 H -0.275 1.275 10 H -0.285 1.285 11 H -0.264 1.264 12 N -0.612 5.612 13 C 0.087 3.913 14 C 0.098 3.902 15 N -0.758 5.758 16 C 0.696 3.304 17 O -0.580 6.580 18 H 0.053 0.947 19 H 0.022 0.978 20 H 0.065 0.935 21 H 0.265 0.735 22 H 0.075 0.925 23 H 0.069 0.931 24 H 0.070 0.930 25 H 0.072 0.928 26 H 0.419 0.581 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.335 3.650 12.745 13.324 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.168 3.832 3 H 0.062 0.938 4 C -0.551 4.551 5 H 0.105 0.895 6 C -0.131 4.131 7 N -0.530 5.530 8 Si 0.697 3.303 9 H -0.201 1.201 10 H -0.211 1.211 11 H -0.189 1.189 12 N -0.351 5.351 13 C -0.037 4.037 14 C -0.028 4.028 15 N -0.422 5.422 16 C 0.396 3.604 17 O -0.457 6.457 18 H 0.072 0.928 19 H 0.041 0.959 20 H 0.085 0.915 21 H 0.075 0.925 22 H 0.093 0.907 23 H 0.087 0.913 24 H 0.089 0.911 25 H 0.090 0.910 26 H 0.259 0.741 Dipole moment (debyes) X Y Z Total from point charges 0.975 3.443 12.000 12.522 hybrid contribution 0.215 0.726 0.171 0.777 sum 1.190 4.170 12.170 12.920 Atomic orbital electron populations 1.22258 0.98053 1.02378 0.98350 1.18986 0.91000 0.91556 0.81655 0.93785 1.21336 1.42580 0.96741 0.94438 0.89542 1.25033 0.94601 0.98057 0.95379 1.69902 1.45760 1.35712 1.01632 0.86979 0.78967 0.86649 0.77658 1.20062 1.21107 1.18896 1.48032 1.52395 1.10725 1.23921 1.22264 0.96431 0.95969 0.89073 1.22177 0.96948 0.86951 0.96738 1.45239 1.56992 1.14388 1.25550 1.15976 0.80369 0.83093 0.80919 1.90900 1.44033 1.56558 1.54196 0.92833 0.95942 0.91550 0.92528 0.90690 0.91264 0.91150 0.91012 0.74144 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.52 9.12 37.15 0.34 -3.18 15 2 C 0.27 6.57 2.55 -69.09 -0.18 6.39 15 3 H 0.04 1.03 5.25 -51.93 -0.27 0.76 15 4 C -0.51 -15.06 8.67 -34.44 -0.30 -15.36 15 5 H 0.09 2.94 7.20 -52.49 -0.38 2.56 15 6 C 0.07 2.09 5.47 -17.82 -0.10 2.00 15 7 N -0.89 -27.75 13.96 55.43 0.77 -26.98 15 8 Si 0.87 20.92 26.99 -169.99 -4.59 16.34 15 9 H -0.27 -6.38 7.11 56.52 0.40 -5.98 15 10 H -0.29 -6.84 7.11 56.52 0.40 -6.44 15 11 H -0.26 -5.98 6.82 56.52 0.39 -5.59 15 12 N -0.61 -13.34 2.83 -172.52 -0.49 -13.83 15 13 C 0.09 1.35 7.65 -3.16 -0.02 1.33 15 14 C 0.10 1.22 8.06 -3.17 -0.03 1.19 15 15 N -0.76 -12.46 6.37 -64.70 -0.41 -12.88 15 16 C 0.70 15.69 8.01 -88.39 -0.71 14.98 15 17 O -0.58 -15.76 15.44 5.29 0.08 -15.68 15 18 H 0.05 1.21 8.14 -51.93 -0.42 0.78 15 19 H 0.02 0.45 8.14 -51.93 -0.42 0.02 15 20 H 0.07 1.68 6.96 -51.93 -0.36 1.32 15 21 H 0.26 7.64 8.31 -40.82 -0.34 7.30 15 22 H 0.07 1.12 8.14 -51.93 -0.42 0.69 15 23 H 0.07 0.91 8.14 -51.93 -0.42 0.48 15 24 H 0.07 0.68 8.14 -51.93 -0.42 0.25 15 25 H 0.07 0.75 8.14 -51.93 -0.42 0.33 15 26 H 0.42 5.81 8.96 -40.82 -0.37 5.44 15 LS Contribution 221.70 15.07 3.34 3.34 Total: -1.00 -35.06 221.70 -5.35 -40.41 By element: Atomic # 1 Polarization: 4.99 SS G_CDS: -3.07 Total: 1.93 kcal Atomic # 6 Polarization: 8.34 SS G_CDS: -0.99 Total: 7.35 kcal Atomic # 7 Polarization: -53.56 SS G_CDS: -0.13 Total: -53.69 kcal Atomic # 8 Polarization: -15.76 SS G_CDS: 0.08 Total: -15.68 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -4.59 Total: 16.34 kcal Total LS contribution 3.34 Total: 3.34 kcal Total: -35.06 -5.35 -40.41 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086681172.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.857 kcal (2) G-P(sol) polarization free energy of solvation -35.065 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.207 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.349 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.414 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.557 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds