Wall clock time and date at job start Mon Mar 30 2020 02:09:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 H 1.09000 * 109.47390 * 2 1 4 4 C 1.50708 * 109.47025 * 240.00223 * 2 1 3 5 5 H 1.07989 * 120.00059 * 274.99160 * 4 2 1 6 6 C 1.37878 * 119.99938 * 94.98972 * 4 2 1 7 7 N 1.31508 * 120.00177 * 184.90612 * 6 4 2 8 8 Si 1.86807 * 119.99894 * 4.90651 * 6 4 2 9 9 H 1.48503 * 109.47044 * 84.81787 * 8 6 4 10 10 H 1.48503 * 109.47110 * 204.81413 * 8 6 4 11 11 H 1.48499 * 109.47347 * 324.81726 * 8 6 4 12 12 N 1.46493 * 109.47680 * 120.00495 * 2 1 3 13 13 C 1.47058 * 125.41362 * 239.72449 * 12 2 1 14 14 C 1.54100 * 103.86362 * 179.86546 * 13 12 2 15 15 N 1.47052 * 103.86174 * 0.36877 * 14 13 12 16 16 C 1.33950 * 109.18219 * 359.75905 * 15 14 13 17 17 O 1.21580 * 123.03973 * 179.97438 * 16 15 14 18 18 H 1.08999 * 109.47383 * 54.88959 * 1 2 3 19 19 H 1.09002 * 109.47204 * 294.88898 * 1 2 3 20 20 H 1.08999 * 109.47434 * 174.88809 * 1 2 3 21 21 H 0.96998 * 120.00485 * 179.97438 * 7 6 4 22 22 H 1.09006 * 110.54429 * 298.59006 * 13 12 2 23 23 H 1.09000 * 110.54966 * 61.39345 * 13 12 2 24 24 H 1.09006 * 110.75621 * 241.67479 * 14 13 12 25 25 H 1.09000 * 110.46732 * 118.92609 * 14 13 12 26 26 H 0.97003 * 125.41039 * 179.75391 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0322 -0.7104 -1.2306 5 1 2.1355 -1.7853 -1.2291 6 6 2.3599 0.0121 -2.3582 7 7 2.7058 -0.6130 -3.4623 8 14 2.3127 1.8792 -2.3176 9 1 3.5980 2.3953 -1.7821 10 1 2.1052 2.3991 -3.6931 11 1 1.1974 2.3273 -1.4455 12 7 2.0183 -0.6907 1.1960 13 6 2.8721 -0.0953 2.2349 14 6 3.0781 -1.2409 3.2448 15 7 2.3261 -2.3628 2.6631 16 6 1.7628 -1.9665 1.5143 17 8 1.0816 -2.6986 0.8228 18 1 -0.3634 0.5910 -0.8407 19 1 -0.3634 0.4325 0.9322 20 1 -0.3634 -1.0235 -0.0916 21 1 2.9359 -0.1047 -4.2557 22 1 3.8258 0.2204 1.8117 23 1 2.3665 0.7451 2.7104 24 1 2.6725 -0.9734 4.2205 25 1 4.1359 -1.4910 3.3269 26 1 2.2500 -3.2491 3.0499 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000086681172.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:09:39 Heat of formation + Delta-G solvation = -41.363257 kcal Electronic energy + Delta-G solvation = -11584.750724 eV Core-core repulsion = 9469.886296 eV Total energy + Delta-G solvation = -2114.864428 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 184.095 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -41.67876 -37.13366 -36.49387 -34.13885 -31.54875 -29.27750 -27.30092 -23.88895 -23.62783 -20.58514 -19.11766 -18.44191 -17.14734 -16.79612 -15.88287 -15.47359 -14.95451 -14.62934 -14.42339 -14.01842 -13.67101 -13.15017 -12.91400 -12.63565 -12.56444 -12.29923 -11.77503 -11.54136 -10.84427 -10.66721 -10.09896 -9.13405 -8.28842 -6.36989 1.35999 1.39064 1.50520 1.95077 2.34449 2.40990 3.05402 3.34632 3.75085 4.20804 4.27405 4.59034 4.70373 4.74232 4.83087 4.93590 5.08271 5.20893 5.52875 5.59533 6.01650 6.33497 6.44701 6.74192 6.96056 7.26902 7.88666 8.89574 Molecular weight = 184.10amu Principal moments of inertia in cm(-1) A = 0.051753 B = 0.014877 C = 0.013847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 540.897006 B = 1881.616542 C = 2021.636208 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.270 3.730 3 H 0.070 0.930 4 C -0.526 4.526 5 H 0.016 0.984 6 C 0.006 3.994 7 N -0.951 5.951 8 Si 0.952 3.048 9 H -0.254 1.254 10 H -0.285 1.285 11 H -0.233 1.233 12 N -0.626 5.626 13 C 0.075 3.925 14 C 0.101 3.899 15 N -0.744 5.744 16 C 0.680 3.320 17 O -0.644 6.644 18 H 0.057 0.943 19 H 0.057 0.943 20 H 0.030 0.970 21 H 0.268 0.732 22 H 0.081 0.919 23 H 0.104 0.896 24 H 0.114 0.886 25 H 0.098 0.902 26 H 0.430 0.570 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.869 6.601 15.396 16.856 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.168 3.832 3 H 0.087 0.913 4 C -0.564 4.564 5 H 0.034 0.966 6 C -0.191 4.191 7 N -0.591 5.591 8 Si 0.773 3.227 9 H -0.178 1.178 10 H -0.211 1.211 11 H -0.156 1.156 12 N -0.364 5.364 13 C -0.047 4.047 14 C -0.023 4.023 15 N -0.407 5.407 16 C 0.380 3.620 17 O -0.527 6.527 18 H 0.076 0.924 19 H 0.076 0.924 20 H 0.049 0.951 21 H 0.077 0.923 22 H 0.099 0.901 23 H 0.122 0.878 24 H 0.132 0.868 25 H 0.116 0.884 26 H 0.272 0.728 Dipole moment (debyes) X Y Z Total from point charges 1.550 6.396 14.750 16.152 hybrid contribution 0.088 -0.319 -0.608 0.692 sum 1.638 6.077 14.143 15.480 Atomic orbital electron populations 1.22139 0.97350 1.00561 1.00344 1.18781 0.91572 0.92046 0.80759 0.91258 1.21438 1.43498 0.93869 0.97616 0.96585 1.26143 0.93648 1.05094 0.94210 1.70103 1.47548 1.38634 1.02797 0.85690 0.80852 0.77774 0.78344 1.17804 1.21140 1.15620 1.47816 1.53187 1.10948 1.24414 1.22748 0.95959 0.97940 0.88071 1.22551 0.98312 0.84070 0.97318 1.45117 1.55925 1.16020 1.23666 1.16399 0.80415 0.83172 0.82031 1.90846 1.46927 1.58246 1.56639 0.92420 0.92405 0.95123 0.92305 0.90093 0.87779 0.86771 0.88351 0.72799 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.61 9.12 71.98 0.66 -5.95 15 2 C 0.27 12.97 2.55 44.25 0.11 13.08 15 3 H 0.07 2.98 5.25 -2.39 -0.01 2.96 15 4 C -0.53 -32.03 8.67 25.60 0.22 -31.81 15 5 H 0.02 1.16 7.20 -2.92 -0.02 1.14 15 6 C 0.01 0.37 5.47 84.66 0.46 0.83 15 7 N -0.95 -61.57 13.96 21.45 0.30 -61.27 15 8 Si 0.95 42.23 26.99 68.60 1.85 44.08 15 9 H -0.25 -10.37 7.11 99.48 0.71 -9.67 15 10 H -0.29 -12.63 7.11 99.48 0.71 -11.92 15 11 H -0.23 -9.13 6.82 99.48 0.68 -8.45 15 12 N -0.63 -26.43 2.83 -818.47 -2.32 -28.75 15 13 C 0.08 2.02 7.65 86.65 0.66 2.68 15 14 C 0.10 2.06 8.06 86.65 0.70 2.76 15 15 N -0.74 -23.00 6.37 -477.34 -3.04 -26.05 15 16 C 0.68 30.77 8.01 179.57 1.44 32.21 15 17 O -0.64 -36.91 15.44 -3.97 -0.06 -36.97 15 18 H 0.06 2.51 8.14 -2.39 -0.02 2.49 15 19 H 0.06 2.18 8.14 -2.39 -0.02 2.16 15 20 H 0.03 1.58 6.96 -2.39 -0.02 1.56 15 21 H 0.27 15.98 8.31 -92.71 -0.77 15.21 15 22 H 0.08 2.08 8.14 -2.38 -0.02 2.06 15 23 H 0.10 2.10 8.14 -2.39 -0.02 2.08 15 24 H 0.11 1.45 8.14 -2.38 -0.02 1.43 15 25 H 0.10 1.56 8.14 -2.39 -0.02 1.54 15 26 H 0.43 11.23 8.96 -92.71 -0.83 10.40 15 Total: -1.00 -83.47 221.70 1.31 -82.16 By element: Atomic # 1 Polarization: 12.68 SS G_CDS: 0.32 Total: 13.00 kcal Atomic # 6 Polarization: 9.54 SS G_CDS: 4.25 Total: 13.80 kcal Atomic # 7 Polarization: -111.01 SS G_CDS: -5.06 Total: -116.07 kcal Atomic # 8 Polarization: -36.91 SS G_CDS: -0.06 Total: -36.97 kcal Atomic # 14 Polarization: 42.23 SS G_CDS: 1.85 Total: 44.08 kcal Total: -83.47 1.31 -82.16 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086681172.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.799 kcal (2) G-P(sol) polarization free energy of solvation -83.468 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.669 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.306 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.162 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.363 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds