Wall clock time and date at job start Mon Mar 30 2020 02:03:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86802 * 120.00067 * 2 1 4 4 H 1.48497 * 109.46802 * 270.00227 * 3 2 1 5 5 H 1.48500 * 109.47012 * 30.00232 * 3 2 1 6 6 H 1.48500 * 109.46694 * 150.00080 * 3 2 1 7 7 C 1.37875 * 119.99686 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99861 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00056 * 359.97438 * 7 2 1 10 10 N 1.46502 * 109.47188 * 180.02562 * 9 7 2 11 11 C 1.46380 * 119.33103 * 89.99819 * 10 9 7 12 12 C 1.53242 * 109.15205 * 150.96490 * 11 10 9 13 13 C 1.53242 * 108.56481 * 55.48200 * 12 11 10 14 14 N 1.46382 * 109.15108 * 304.51860 * 13 12 11 15 15 C 1.34136 * 121.34052 * 29.31730 * 14 13 12 16 16 O 1.21588 * 118.69512 * 179.14852 * 15 14 13 17 17 H 0.97005 * 119.99746 * 359.97438 * 1 2 3 18 18 H 1.09001 * 109.47294 * 60.00588 * 9 7 2 19 19 H 1.09004 * 109.47516 * 299.99927 * 9 7 2 20 20 H 1.09002 * 109.52172 * 31.06697 * 11 10 9 21 21 H 1.08994 * 109.53014 * 270.86855 * 11 10 9 22 22 H 1.09001 * 109.62162 * 295.75706 * 12 11 10 23 23 H 1.08998 * 109.77253 * 175.29619 * 12 11 10 24 24 H 1.08997 * 109.52104 * 184.61558 * 13 12 11 25 25 H 1.09000 * 109.57241 * 64.45514 * 13 12 11 26 26 H 0.97001 * 119.32574 * 209.03079 * 14 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5467 1.4400 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0844 -1.1941 0.0010 9 6 1.2509 -2.4991 0.0017 10 7 2.2029 -3.6127 0.0027 11 6 2.6689 -4.1566 1.2793 12 6 3.0118 -5.6392 1.0990 13 6 4.0321 -5.7693 -0.0369 14 7 3.4922 -5.1378 -1.2421 15 6 2.6341 -4.1096 -1.1663 16 8 2.2277 -3.6111 -2.1982 17 1 -0.4850 0.8401 0.0004 18 1 0.6240 -2.5575 -0.8880 19 1 0.6246 -2.5563 0.8920 20 1 1.8833 -4.0529 2.0279 21 1 3.5567 -3.6142 1.6041 22 1 2.1093 -6.1955 0.8458 23 1 3.4384 -6.0338 2.0211 24 1 4.2257 -6.8237 -0.2336 25 1 4.9610 -5.2753 0.2482 26 1 3.7635 -5.4671 -2.1133 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000086681369.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:03:17 Heat of formation + Delta-G solvation = -57.118949 kcal Electronic energy + Delta-G solvation = -11399.983309 eV Core-core repulsion = 9284.435664 eV Total energy + Delta-G solvation = -2115.547646 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 184.095 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -41.34820 -37.30101 -36.23641 -34.42535 -31.83570 -29.35914 -26.54107 -25.07185 -23.36831 -19.80693 -18.62080 -18.35866 -17.92865 -16.63546 -16.55434 -15.45221 -15.04686 -14.75841 -14.51985 -14.09382 -13.53606 -13.05652 -12.80026 -12.55147 -12.25006 -12.17797 -12.03402 -11.66536 -10.94388 -10.63015 -10.02111 -9.33363 -8.20765 -6.35865 1.36336 1.40398 1.49891 2.01901 2.32149 2.41984 3.07058 3.15327 3.89975 4.03552 4.33410 4.53613 4.73609 4.78412 4.87697 5.02752 5.19774 5.27450 5.57899 5.73406 5.96499 6.08608 6.24288 6.72700 7.16499 7.31268 7.79922 8.86115 Molecular weight = 184.10amu Principal moments of inertia in cm(-1) A = 0.060240 B = 0.011687 C = 0.011328 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 464.692640 B = 2395.286207 C = 2471.128842 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.006 3.994 3 Si 0.970 3.030 4 H -0.281 1.281 5 H -0.271 1.271 6 H -0.263 1.263 7 C -0.542 4.542 8 H 0.049 0.951 9 C 0.274 3.726 10 N -0.618 5.618 11 C 0.105 3.895 12 C -0.141 4.141 13 C 0.108 3.892 14 N -0.736 5.736 15 C 0.691 3.309 16 O -0.658 6.658 17 H 0.268 0.732 18 H -0.003 1.003 19 H 0.027 0.973 20 H 0.080 0.920 21 H 0.060 0.940 22 H 0.069 0.931 23 H 0.135 0.865 24 H 0.119 0.881 25 H 0.070 0.930 26 H 0.415 0.585 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.715 -11.654 5.248 15.470 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.193 4.193 3 Si 0.794 3.206 4 H -0.207 1.207 5 H -0.196 1.196 6 H -0.187 1.187 7 C -0.581 4.581 8 H 0.067 0.933 9 C 0.152 3.848 10 N -0.354 5.354 11 C -0.017 4.017 12 C -0.179 4.179 13 C -0.015 4.015 14 N -0.395 5.395 15 C 0.392 3.608 16 O -0.542 6.542 17 H 0.077 0.923 18 H 0.015 0.985 19 H 0.045 0.955 20 H 0.098 0.902 21 H 0.079 0.921 22 H 0.087 0.913 23 H 0.153 0.847 24 H 0.137 0.863 25 H 0.089 0.911 26 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges 8.294 -11.236 4.963 14.821 hybrid contribution 0.108 0.954 -0.543 1.103 sum 8.402 -10.282 4.420 13.995 Atomic orbital electron populations 1.70056 1.07556 1.28198 1.51128 1.25888 0.95875 1.03106 0.94420 0.85381 0.78742 0.78261 0.78189 1.20672 1.19612 1.18681 1.21708 0.93101 0.92183 1.51125 0.93308 1.18684 0.87367 0.83157 0.95627 1.47142 1.47261 1.36043 1.04912 1.21746 1.00121 0.94967 0.84884 1.22228 1.00327 0.94014 1.01380 1.21814 0.96194 0.99825 0.83702 1.44925 1.48490 1.34605 1.11437 1.15858 0.80389 0.80778 0.83806 1.90858 1.63879 1.64380 1.35060 0.92333 0.98525 0.95547 0.90180 0.92148 0.91261 0.84732 0.86294 0.91127 0.74804 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.87 13.29 21.45 0.28 -57.59 15 2 C 0.01 0.35 5.46 84.65 0.46 0.81 15 3 Si 0.97 46.27 29.54 68.60 2.03 48.30 15 4 H -0.28 -13.38 7.11 99.48 0.71 -12.68 15 5 H -0.27 -12.21 7.11 99.48 0.71 -11.50 15 6 H -0.26 -11.90 7.11 99.48 0.71 -11.19 15 7 C -0.54 -32.88 9.38 25.60 0.24 -32.64 15 8 H 0.05 2.95 7.81 -2.91 -0.02 2.93 15 9 C 0.27 15.67 5.10 85.63 0.44 16.11 15 10 N -0.62 -28.54 2.80 -845.65 -2.37 -30.91 15 11 C 0.11 3.41 6.55 86.48 0.57 3.98 15 12 C -0.14 -2.95 6.20 30.76 0.19 -2.76 15 13 C 0.11 2.16 7.21 86.48 0.62 2.78 15 14 N -0.74 -23.32 5.58 -479.84 -2.68 -26.00 15 15 C 0.69 32.08 8.18 179.45 1.47 33.54 15 16 O -0.66 -38.14 16.50 -3.99 -0.07 -38.21 15 17 H 0.27 15.52 8.31 -92.70 -0.77 14.75 15 18 H 0.00 -0.22 7.32 -2.39 -0.02 -0.24 15 19 H 0.03 1.51 7.86 -2.38 -0.02 1.49 15 20 H 0.08 2.51 7.86 -2.39 -0.02 2.49 15 21 H 0.06 1.91 8.14 -2.39 -0.02 1.89 15 22 H 0.07 1.54 8.14 -2.39 -0.02 1.52 15 23 H 0.13 1.63 8.14 -2.39 -0.02 1.61 15 24 H 0.12 1.42 8.14 -2.39 -0.02 1.40 15 25 H 0.07 1.31 8.14 -2.39 -0.02 1.29 15 26 H 0.41 11.54 8.88 -92.71 -0.82 10.72 15 Total: -1.00 -79.64 225.86 1.54 -78.11 By element: Atomic # 1 Polarization: 4.13 SS G_CDS: 0.35 Total: 4.48 kcal Atomic # 6 Polarization: 17.84 SS G_CDS: 3.99 Total: 21.82 kcal Atomic # 7 Polarization: -109.74 SS G_CDS: -4.76 Total: -114.50 kcal Atomic # 8 Polarization: -38.14 SS G_CDS: -0.07 Total: -38.21 kcal Atomic # 14 Polarization: 46.27 SS G_CDS: 2.03 Total: 48.30 kcal Total: -79.64 1.54 -78.11 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086681369.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.986 kcal (2) G-P(sol) polarization free energy of solvation -79.643 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.656 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.537 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.105 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.119 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds